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Tom Vercauteren
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- affiliation: University College London (UCL), UK
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2020 – today
- 2025
- [j86]Yang Liu, Maxence Boels, Luis C. García-Peraza-Herrera, Tom Vercauteren, Prokar Dasgupta, Alejandro Granados, Sébastien Ourselin:
LoViT: Long Video Transformer for surgical phase recognition. Medical Image Anal. 99: 103366 (2025) - 2024
- [j85]Zhe Han, Huanyu Tian, Tom Vercauteren, Da Liu, Changsheng Li, Xingguang Duan:
Collaborative human-robot surgery for Mandibular Angle Split Osteotomy: Optical tracking based approach. Biomed. Signal Process. Control. 93: 106173 (2024) - [j84]Meng Wei, Miaojing Shi, Tom Vercauteren:
Enhancing surgical instrument segmentation: integrating vision transformer insights with adapter. Int. J. Comput. Assist. Radiol. Surg. 19(7): 1313-1320 (2024) - [j83]Aaron Kujawa, Reuben Dorent, Steve Connor, Suki Thomson, Marina Ivory, Ali Vahedi, Emily Guilhem, Navodini Wijethilake, Robert Bradford, Neil Kitchen, Sotirios Bisdas, Sébastien Ourselin, Tom Vercauteren, Jonathan Shapey:
Deep learning for automatic segmentation of vestibular schwannoma: a retrospective study from multi-center routine MRI. Frontiers Comput. Neurosci. 18 (2024) - [j82]Andres Diaz-Pinto, Sachidanand Alle, Vishwesh Nath, Yucheng Tang, Alvin Ihsani, Muhammad Asad, Fernando Pérez-García, Pritesh Mehta, Wenqi Li, Mona Flores, Holger R. Roth, Tom Vercauteren, Daguang Xu, Prerna Dogra, Sébastien Ourselin, Andrew Feng, M. Jorge Cardoso:
MONAI Label: A framework for AI-assisted interactive labeling of 3D medical images. Medical Image Anal. 95: 103207 (2024) - [j81]Virginia Fernandez, Walter Hugo Lopez Pinaya, Pedro Borges, Mark S. Graham, Petru-Daniel Tudosiu, Tom Vercauteren, M. Jorge Cardoso:
Generating multi-pathological and multi-modal images and labels for brain MRI. Medical Image Anal. 97: 103278 (2024) - [j80]Lucas Fidon, Michael Aertsen, Florian Kofler, Andrea Bink, Anna L. David, Thomas Deprest, Doaa Emam, Frédéric Guffens, András Jakab, Gregor Kasprian, Patric Kienast, Andrew Melbourne, Bjoern H. Menze, Nada Mufti, Ivana Pogledic, Daniela Prayer, Marlene Stuempflen, Esther Van Elslander, Sébastien Ourselin, Jan Deprest, Tom Vercauteren:
A Dempster-Shafer Approach to Trustworthy AI With Application to Fetal Brain MRI Segmentation. IEEE Trans. Pattern Anal. Mach. Intell. 46(5): 3784-3795 (2024) - [j79]Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu:
Long-Term Dependency for 3D Reconstruction of Freehand Ultrasound Without External Tracker. IEEE Trans. Biomed. Eng. 71(3): 1033-1042 (2024) - [c121]Florian Ramakers, Tom Vercauteren, Jan Deprest, Helena Williams:
UltraAugment: Fan-shape and Artifact-based Data Augmentation for 2D Ultrasound Images. CVPR Workshops 2024: 2422-2431 - [c120]Theodore Barfoot, Luis C. García-Peraza-Herrera, Ben Glocker, Tom Vercauteren:
Average Calibration Error: A Differentiable Loss for Improved Reliability in Image Segmentation. MICCAI (9) 2024: 139-149 - [c119]Aaron Kujawa, Reuben Dorent, Sébastien Ourselin, Tom Vercauteren:
Label Merge-and-Split: A Graph-Colouring Approach for Memory-Efficient Brain Parcellation. MICCAI (9) 2024: 350-360 - [c118]Qi Li, Ziyi Shen, Qianye Yang, Dean C. Barratt, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu:
Nonrigid Reconstruction of Freehand Ultrasound Without a Tracker. MICCAI (4) 2024: 689-699 - [c117]Charlie Budd, Tom Vercauteren:
Transferring Relative Monocular Depth to Surgical Vision with Temporal Consistency. MICCAI (6) 2024: 692-702 - [i118]Oluwatosin Alabi, Tom Vercauteren, Miaojing Shi:
Multitask Learning in Minimally Invasive Surgical Vision: A Review. CoRR abs/2401.08256 (2024) - [i117]Charlie Budd, Tom Vercauteren:
Transferring Relative Monocular Depth to Surgical Vision with Temporal Consistency. CoRR abs/2403.06683 (2024) - [i116]Zijian Zhou, Miaojing Shi, Meng Wei, Oluwatosin Alabi, Zijie Yue, Tom Vercauteren:
Large Model driven Radiology Report Generation with Clinical Quality Reinforcement Learning. CoRR abs/2403.06728 (2024) - [i115]Theodore Barfoot, Luis C. García-Peraza-Herrera, Ben Glocker, Tom Vercauteren:
Average Calibration Error: A Differentiable Loss for Improved Reliability in Image Segmentation. CoRR abs/2403.06759 (2024) - [i114]Aaron Kujawa, Reuben Dorent, Sébastien Ourselin, Tom Vercauteren:
Label merge-and-split: A graph-colouring approach for memory-efficient brain parcellation. CoRR abs/2404.10572 (2024) - [i113]Dominic LaBella, Katherine Schumacher, Michael Mix, Kevin Leu, Shan McBurney-Lin, Pierre Nedelec, Javier E. Villanueva-Meyer, Jonathan Shapey, Tom Vercauteren, Kazumi Chia, Omar Al-Salihi, Justin Leu, Lia Halasz, Yury Velichko, Chunhao Wang, John Kirkpatrick, Scott Floyd, Zachary J. Reitman, Trey Mullikin, Ulas Bagci, Sean Sachdev, Jona A. Hattangadi-Gluth, Tyler M. Seibert, Nikdokht Farid, Connor Puett, Matthew W. Pease, Kevin Shiue, Syed Muhammad Anwar, Shahriar Faghani, Muhammad Ammar Haider, Pranav I. Warman, Jake Albrecht, András Jakab, Mana Moassefi, Verena Chung, Alejandro Aristizabal, Alexandros Karargyris, Hasan Kassem, Sarthak Pati, Micah J. Sheller, Christina Huang, Aaron Coley, Siddharth Ghanta, Alex Schneider, Conrad Sharp, Rachit Saluja, Florian Kofler, Philipp Lohmann, Philipp Vollmuth, Louis Gagnon, Maruf Adewole, Hongwei Bran Li, Anahita Fathi Kazerooni, Nourel Hoda Tahon, Udunna Anazodo, Ahmed W. Moawad, Bjoern H. Menze, Marius George Linguraru, Mariam Aboian, Benedikt Wiestler, Ujjwal Baid, Gian Marco Conte, Andreas M. Rauschecker, Ayman Nada, Aly H. Abayazeed, Raymond Y. Huang, Maria Correia de Verdier, Jeffrey D. Rudie, Spyridon Bakas, Evan Calabrese:
Brain Tumor Segmentation (BraTS) Challenge 2024: Meningioma Radiotherapy Planning Automated Segmentation. CoRR abs/2405.18383 (2024) - [i112]Oluwatosin Alabi, Ko Ko Zayar Toe, Zijian Zhou, Charlie Budd, Nicholas Raison, Miaojing Shi, Tom Vercauteren:
CholecInstanceSeg: A Tool Instance Segmentation Dataset for Laparoscopic Surgery. CoRR abs/2406.16039 (2024) - [i111]Qi Li, Ziyi Shen, Qianye Yang, Dean C. Barratt, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu:
Nonrigid Reconstruction of Freehand Ultrasound without a Tracker. CoRR abs/2407.05767 (2024) - [i110]Peichao Li, Oscar MacCormac, Jonathan Shapey, Tom Vercauteren:
A self-supervised and adversarial approach to hyperspectral demosaicking and RGB reconstruction in surgical imaging. CoRR abs/2407.19282 (2024) - [i109]Christopher E. Mower, Martin Huber, Huanyu Tian, Ayoob Davoodi, Emmanuel B. Vander Poorten, Tom Vercauteren, Christos Bergeles:
Vision and Contact based Optimal Control for Autonomous Trocar Docking. CoRR abs/2407.21570 (2024) - [i108]Zhonghao Wang, Junwen Wang, Charlie Budd, Oscar MacCormac, Jonathan Shapey, Tom Vercauteren:
Scribble-Based Interactive Segmentation of Medical Hyperspectral Images. CoRR abs/2408.02708 (2024) - 2023
- [j78]Peichao Li, Muhammad Asad, Conor C. Horgan, Oscar MacCormac, Jonathan Shapey, Tom Vercauteren:
Spatial gradient consistency for unsupervised learning of hyperspectral demosaicking: application to surgical imaging. Int. J. Comput. Assist. Radiol. Surg. 18(6): 981-988 (2023) - [j77]Mirza Awais Ahmad, Mouloud Ourak, Dirk Wenmakers, Ignacio Valenzuela, David Basurto, Sébastien Ourselin, Tom Vercauteren, Jan Deprest, Emmanuel B. Vander Poorten:
Development and validation of a flexible fetoscope for fetoscopic laser coagulation. Int. J. Comput. Assist. Radiol. Surg. 18(9): 1603-1611 (2023) - [j76]Charlie Budd, Luis C. García-Peraza-Herrera, Martin Huber, Sébastien Ourselin, Tom Vercauteren:
Rapid and robust endoscopic content area estimation: a lean GPU-based pipeline and curated benchmark dataset. Comput. methods Biomech. Biomed. Eng. Imaging Vis. 11(4): 1215-1224 (2023) - [j75]Luis C. García-Peraza-Herrera, Conor C. Horgan, Sébastien Ourselin, Michael Ebner, Tom Vercauteren:
Hyperspectral image segmentation: a preliminary study on the Oral and Dental Spectral Image Database (ODSI-DB). Comput. methods Biomech. Biomed. Eng. Imaging Vis. 11(4): 1290-1298 (2023) - [j74]Jianghao Wu, Dong Guo, Lu Wang, Shuojue Yang, Yuanjie Zheng, Jonathan Shapey, Tom Vercauteren, Sotirios Bisdas, Robert Bradford, Shakeel R. Saeed, Neil Kitchen, Sébastien Ourselin, Shaoting Zhang, Guotai Wang:
TISS-net: Brain tumor image synthesis and segmentation using cascaded dual-task networks and error-prediction consistency. Neurocomputing 544: 126295 (2023) - [j73]Reuben Dorent, Aaron Kujawa, Marina Ivory, Spyridon Bakas, Nicola Rieke, Samuel Joutard, Ben Glocker, M. Jorge Cardoso, Marc Modat, Kayhan Batmanghelich, Arseniy Belkov, Maria G. Baldeon Calisto, Jae Won Choi, Benoit M. Dawant, Hexin Dong, Sergio Escalera, Yubo Fan, Lasse Hansen, Mattias P. Heinrich, Smriti Joshi, Victoriya Kashtanova, Hyeongyu Kim, Satoshi Kondo, Christian N. Kruse, Susana K. Lai-Yuen, Hao Li, Han Liu, Buntheng Ly, Ipek Oguz, Hyungseob Shin, Boris Shirokikh, Zixian Su, Guotai Wang, Jianghao Wu, Yanwu Xu, Kai Yao, Li Zhang, Sébastien Ourselin, Jonathan Shapey, Tom Vercauteren:
CrossMoDA 2021 challenge: Benchmark of cross-modality domain adaptation techniques for vestibular schwannoma and cochlea segmentation. Medical Image Anal. 83: 102628 (2023) - [j72]Guotai Wang, Shaoting Zhang, Sharon X. Huang, Tom Vercauteren, Dimitris N. Metaxas:
Editorial for special issue on explainable and generalizable deep learning methods for medical image computing. Medical Image Anal. 84: 102727 (2023) - [j71]Kelly Payette, Hongwei Bran Li, Priscille de Dumast, Roxane Licandro, Hui Ji, Md Mahfuzur Rahman Siddiquee, Daguang Xu, Andriy Myronenko, Hao Liu, Yuchen Pei, Lisheng Wang, Ying Peng, Juanying Xie, Huiquan Zhang, Guiming Dong, Hao Fu, Guotai Wang, ZunHyan Rieu, Donghyeon Kim, Hyun Gi Kim, Davood Karimi, Ali Gholipour, Helena R. Torres, Bruno Oliveira, João L. Vilaça, Yang Lin, Netanell Avisdris, Ori Ben-Zvi, Dafna Ben-Bashat, Lucas Fidon, Michael Aertsen, Tom Vercauteren, Daniel Sobotka, Georg Langs, Mireia Alenyà, Maria Inmaculada Villanueva, Oscar Camara, Bella Specktor-Fadida, Leo Joskowicz, Liao Weibin, Lv Yi, Xuesong Li, Moona Mazher, Abdul Qayyum, Domenec Puig, Hamza Kebiri, Zelin Zhang, Xinyi Xu, Dan Wu, KuanLun Liao, YiXuan Wu, JinTai Chen, Yunzhi Xu, Li Zhao, Lana Vasung, Bjoern H. Menze, Meritxell Bach Cuadra, András Jakab:
Fetal brain tissue annotation and segmentation challenge results. Medical Image Anal. 88: 102833 (2023) - [j70]Jianghao Wu, Guotai Wang, Ran Gu, Tao Lu, Yinan Chen, Wentao Zhu, Tom Vercauteren, Sébastien Ourselin, Shaoting Zhang:
UPL-SFDA: Uncertainty-Aware Pseudo Label Guided Source-Free Domain Adaptation for Medical Image Segmentation. IEEE Trans. Medical Imaging 42(12): 3932-3943 (2023) - [c116]Christopher E. Mower, João Moura, Nazanin Zamani Behabadi, Sethu Vijayakumar, Tom Vercauteren, Christos Bergeles:
OpTaS: An Optimization-based Task Specification Library for Trajectory Optimization and Model Predictive Control. ICRA 2023: 9118-9124 - [c115]Florian Kofler, Suprosanna Shit, Ivan Ezhov, Lucas Fidon, Izabela Horvath, Rami Al-Maskari, Hongwei Bran Li, Harsharan Bhatia, Timo Loehr, Marie Piraud, Ali Ertürk, Jan Kirschke, Jan C. Peeken, Tom Vercauteren, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze:
blob loss: Instance Imbalance Aware Loss Functions for Semantic Segmentation. IPMI 2023: 755-767 - [c114]Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu:
Trackerless Freehand Ultrasound with Sequence Modelling and Auxiliary Transformation Over Past and Future Frames. ISBI 2023: 1-5 - [c113]Mirza Awais Ahmad, Mouloud Ourak, Tom Vercauteren, Jan Deprest, Emmanuel B. Vander Poorten:
Towards in-utero Navigational Assistance: A Multi Task Neural Network for Segmentation and Pose Estimation in Fetoscopy. ISMR 2023: 1-6 - [c112]Virginia Fernandez, Walter Hugo Lopez Pinaya, Pedro Borges, Mark S. Graham, Tom Vercauteren, M. Jorge Cardoso:
A 3D Generative Model of Pathological Multi-modal MR Images and Segmentations. DGM4MICCAI 2023: 132-142 - [c111]Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu:
Privileged Anatomical and Protocol Discrimination in Trackerless 3D Ultrasound Reconstruction. ASMUS@MICCAI 2023: 142-151 - [c110]Martin Huber, Sébastien Ourselin, Christos Bergeles, Tom Vercauteren:
Deep Homography Prediction for Endoscopic Camera Motion Imitation Learning. MICCAI (9) 2023: 217-226 - [c109]Reuben Dorent, Nazim Haouchine, Fryderyk Victor Kögl, Samuel Joutard, Parikshit Juvekar, Erickson Torio, Alexandra J. Golby, Sébastien Ourselin, Sarah F. Frisken, Tom Vercauteren, Tina Kapur, William M. Wells III:
Unified Brain MR-Ultrasound Synthesis Using Multi-modal Hierarchical Representations. MICCAI (10) 2023: 448-458 - [c108]Muhammad Asad, Helena Williams, Indrajeet Mandal, Sarim Ather, Jan Deprest, Jan D'hooge, Tom Vercauteren:
Adaptive Multi-scale Online Likelihood Network for AI-Assisted Interactive Segmentation. MICCAI (2) 2023: 564-574 - [c107]Charlie Budd, Jianrong Qiu, Oscar MacCormac, Martin Huber, Christopher E. Mower, Mirek Janatka, Théo Trotouin, Jonathan Shapey, Mads S. Bergholt, Tom Vercauteren:
Deep Reinforcement Learning Based System for Intraoperative Hyperspectral Video Autofocusing. MICCAI (9) 2023: 658-667 - [c106]Zijian Zhou, Oluwatosin Alabi, Meng Wei, Tom Vercauteren, Miaojing Shi:
Text Promptable Surgical Instrument Segmentation with Vision-Language Models. NeurIPS 2023 - [i107]Christopher E. Mower, João Moura, Nazanin Zamani Behabadi, Sethu Vijayakumar, Tom Vercauteren, Christos Bergeles:
OpTaS: An Optimization-based Task Specification Library for Trajectory Optimization and Model Predictive Control. CoRR abs/2301.13512 (2023) - [i106]Peichao Li, Muhammad Asad, Conor C. Horgan, Oscar MacCormac, Jonathan Shapey, Tom Vercauteren:
Spatial gradient consistency for unsupervised learning of hyperspectral demosaicking: Application to surgical imaging. CoRR abs/2302.10927 (2023) - [i105]Luis C. García-Peraza-Herrera, Conor C. Horgan, Sébastien Ourselin, Michael Ebner, Tom Vercauteren:
Hyperspectral Image Segmentation: A Preliminary Study on the Oral and Dental Spectral Image Database (ODSI-DB). CoRR abs/2303.08252 (2023) - [i104]Luis C. García-Peraza-Herrera, Sébastien Ourselin, Tom Vercauteren:
VideoSum: A Python Library for Surgical Video Summarization. CoRR abs/2303.10173 (2023) - [i103]Muhammad Asad, Helena Williams, Indrajeet Mandal, Sarim Ather, Jan Deprest, Jan D'hooge, Tom Vercauteren:
Adaptive Multi-scale Online Likelihood Network for AI-assisted Interactive Segmentation. CoRR abs/2303.13696 (2023) - [i102]Yang Liu, Maxence Boels, Luis C. García-Peraza-Herrera, Tom Vercauteren, Prokar Dasgupta, Alejandro Granados, Sébastien Ourselin:
LoViT: Long Video Transformer for Surgical Phase Recognition. CoRR abs/2305.08989 (2023) - [i101]Andres Diaz-Pinto, Pritesh Mehta, Sachidanand Alle, Muhammad Asad, Richard Brown, Vishwesh Nath, Alvin Ihsani, Michela Antonelli, Daniel Palkovics, Csaba Pinter, Ron Alkalay, Steve Pieper, Holger R. Roth, Daguang Xu, Prerna Dogra, Tom Vercauteren, Andrew Feng, Abood Quraini, Sébastien Ourselin, M. Jorge Cardoso:
DeepEdit: Deep Editable Learning for Interactive Segmentation of 3D Medical Images. CoRR abs/2305.10655 (2023) - [i100]Zijian Zhou, Oluwatosin Alabi, Meng Wei, Tom Vercauteren, Miaojing Shi:
Text Promptable Surgical Instrument Segmentation with Vision-Language Models. CoRR abs/2306.09244 (2023) - [i99]Mengjie Shi, Tom Vercauteren, Wenfeng Xia:
Learning-based sound speed reconstruction and aberration correction in linear-array photoacoustic/ultrasound imaging. CoRR abs/2306.11034 (2023) - [i98]Charlie Budd, Jianrong Qiu, Oscar MacCormac, Martin Huber, Christopher E. Mower, Mirek Janatka, Théo Trotouin, Jonathan Shapey, Mads S. Bergholt, Tom Vercauteren:
Deep Reinforcement Learning Based System for Intraoperative Hyperspectral Video Autofocusing. CoRR abs/2307.11638 (2023) - [i97]Meng Wei, Charlie Budd, Luis C. García-Peraza-Herrera, Reuben Dorent, Miaojing Shi, Tom Vercauteren:
SegMatch: A semi-supervised learning method for surgical instrument segmentation. CoRR abs/2308.05232 (2023) - [i96]Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu:
Privileged Anatomical and Protocol Discrimination in Trackerless 3D Ultrasound Reconstruction. CoRR abs/2308.10293 (2023) - [i95]Jianning Li, Antonio Pepe, Christina Gsaxner, Gijs Luijten, Yuan Jin, Narmada Ambigapathy, Enrico Nasca, Naida Solak, Gian Marco Melito, Afaque R. Memon, Xiaojun Chen, Jan Stefan Kirschke, Ezequiel de la Rosa, Patrick Ferdinand Christ, Hongwei Bran Li, David G. Ellis, Michele R. Aizenberg, Sergios Gatidis, Thomas Küstner, Nadya Shusharina, Nicholas Heller, Vincent Andrearczyk, Adrien Depeursinge, Mathieu Hatt, Anjany Sekuboyina, Maximilian Löffler, Hans Liebl, Reuben Dorent, Tom Vercauteren, Jonathan Shapey, Aaron Kujawa, Stefan Cornelissen, Patrick Langenhuizen, Achraf Ben-Hamadou, Ahmed Rekik, Sergi Pujades, Edmond Boyer, Federico Bolelli, Costantino Grana, Luca Lumetti, Hamidreza Salehi, Jun Ma, Yao Zhang, Ramtin Gharleghi, Susann Beier, Arcot Sowmya, Eduardo A. Garza-Villarreal, Thania Balducci, et al.:
MedShapeNet - A Large-Scale Dataset of 3D Medical Shapes for Computer Vision. CoRR abs/2308.16139 (2023) - [i94]Helena Williams, João Pedrosa, Muhammad Asad, Laura Cattani, Tom Vercauteren, Jan Deprest, Jan D'hooge:
DEEPBEAS3D: Deep Learning and B-Spline Explicit Active Surfaces. CoRR abs/2309.02335 (2023) - [i93]Reuben Dorent, Nazim Haouchine, Fryderyk Victor Kögl, Samuel Joutard, Parikshit Juvekar, Erickson Torio, Alexandra J. Golby, Sébastien Ourselin, Sarah F. Frisken, Tom Vercauteren, Tina Kapur, William M. Wells III:
Unified Brain MR-Ultrasound Synthesis using Multi-Modal Hierarchical Representations. CoRR abs/2309.08747 (2023) - [i92]Jianghao Wu, Guotai Wang, Ran Gu, Tao Lu, Yinan Chen, Wentao Zhu, Tom Vercauteren, Sébastien Ourselin, Shaoting Zhang:
UPL-SFDA: Uncertainty-aware Pseudo Label Guided Source-Free Domain Adaptation for Medical Image Segmentation. CoRR abs/2309.10244 (2023) - [i91]Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu:
Long-term Dependency for 3D Reconstruction of Freehand Ultrasound Without External Tracker. CoRR abs/2310.10248 (2023) - [i90]Navodini Wijethilake, Steve Connor, Anna Oviedova, Rebecca Burger, Tom Vercauteren, Jonathan Shapey:
A Clinical Guideline Driven Automated Linear Feature Extraction for Vestibular Schwannoma. CoRR abs/2310.19392 (2023) - [i89]Virginia Fernandez, Walter Hugo Lopez Pinaya, Pedro Borges, Mark S. Graham, Tom Vercauteren, M. Jorge Cardoso:
A 3D generative model of pathological multi-modal MR images and segmentations. CoRR abs/2311.04552 (2023) - [i88]Martin Huber, Christopher E. Mower, Sébastien Ourselin, Tom Vercauteren, Christos Bergeles:
LBR-Stack: ROS 2 and Python Integration of KUKA FRI for Med and IIWA Robots. CoRR abs/2311.12709 (2023) - 2022
- [j69]Charalampos Komninos, Theodoros Pissas, Lina Mekki, Blanca Flores, Edward Bloch, Tom Vercauteren, Sébastien Ourselin, Lyndon Da Cruz, Christos Bergeles:
Surgical biomicroscopy-guided intra-operative optical coherence tomography (iOCT) image super-resolution. Int. J. Comput. Assist. Radiol. Surg. 17(5): 877-883 (2022) - [j68]Martin Huber, Sébastien Ourselin, Christos Bergeles, Tom Vercauteren:
Deep homography estimation in dynamic surgical scenes for laparoscopic camera motion extraction. Comput. methods Biomech. Biomed. Eng. Imaging Vis. 10(3): 321-329 (2022) - [j67]Peichao Li, Michael Ebner, Philip J. Noonan, Conor C. Horgan, Anisha Bahl, Sébastien Ourselin, Jonathan Shapey, Tom Vercauteren:
Deep learning approach for hyperspectral image demosaicking, spectral correction and high-resolution RGB reconstruction. Comput. methods Biomech. Biomed. Eng. Imaging Vis. 10(4): 409-417 (2022) - [j66]Caspar Gruijthuijsen, Luis C. García-Peraza-Herrera, Gianni Borghesan, Dominiek Reynaerts, Jan Deprest, Sébastien Ourselin, Tom Vercauteren, Emmanuel B. Vander Poorten:
Robotic Endoscope Control Via Autonomous Instrument Tracking. Frontiers Robotics AI 9: 832208 (2022) - [j65]Muhammad Asad, Reuben Dorent, Tom Vercauteren:
FastGeodis: Fast Generalised Geodesic Distance Transform. J. Open Source Softw. 7(79): 4532 (2022) - [j64]Adrià Casamitjana, Marco Lorenzi, Sebastiano Ferraris, Loïc Peter, Marc Modat, Allison Stevens, Bruce Fischl, Tom Vercauteren, Juan Eugenio Iglesias:
Robust joint registration of multiple stains and MRI for multimodal 3D histology reconstruction: Application to the Allen human brain atlas. Medical Image Anal. 75: 102265 (2022) - [j63]Daniel Sobotka, Michael Ebner, Ernst Schwartz, Karl-Heinz Nenning, Athena Taymourtash, Tom Vercauteren, Sébastien Ourselin, Gregor Kasprian, Daniela Prayer, Georg Langs, Roxane Licandro:
Motion correction and volumetric reconstruction for fetal functional magnetic resonance imaging data. NeuroImage 255: 119213 (2022) - [j62]Mengjie Shi, Semyon Bodian, Simeon J. West, Sanjayan Sathasivam, Ross J. Gordon, Paul Collier, Tom Vercauteren, Adrien E. Desjardins, Sacha Noimark, Wenfeng Xia:
Enhanced Photoacoustic Visualisation of Clinical Needles by Combining Interstitial and Extracorporeal Illumination of Elastomeric Nanocomposite Coatings. Sensors 22(17): 6417 (2022) - [j61]Christian Baker, Miguel Xochicale, Fang-Yu Lin, Sunish Mathews, Francois Joubert, Dzhoshkun I. Shakir, Richard Miles, Charles A. Mosse, Tianrui Zhao, Weidong Liang, Yada Kunpalin, Brian Dromey, Talisa Mistry, Neil J. Sebire, Edward Zhang, Sébastien Ourselin, Paul C. Beard, Anna L. David, Adrien E. Desjardins, Tom Vercauteren, Wenfeng Xia:
Intraoperative Needle Tip Tracking with an Integrated Fibre-Optic Ultrasound Sensor. Sensors 22(23): 9035 (2022) - [j60]Qianye Yang, David Atkinson, Yunguan Fu, Tom Syer, Wen Yan, Shonit Punwani, Matthew J. Clarkson, Dean C. Barratt, Tom Vercauteren, Yipeng Hu:
Cross-Modality Image Registration Using a Training-Time Privileged Third Modality. IEEE Trans. Medical Imaging 41(11): 3421-3431 (2022) - [c105]Florian Kofler, Ivan Ezhov, Lucas Fidon, Izabela Horvath, Ezequiel de la Rosa, John LaMaster, Hongwei Li, Tom Finck, Suprosanna Shit, Johannes C. Paetzold, Spyridon Bakas, Marie Piraud, Jan Kirschke, Tom Vercauteren, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze:
Deep Quality Estimation: Creating Surrogate Models for Human Quality Ratings. BrainLes@MICCAI 2022: 3-13 - [c104]Christopher E. Mower, Theodoros Stouraitis, João Moura, Christian Rauch, Lei Yan, Nazanin Zamani Behabadi, Michael Gienger, Tom Vercauteren, Christos Bergeles, Sethu Vijayakumar:
ROS-PyBullet Interface: A Framework for Reliable Contact Simulation and Human-Robot Interaction. CoRL 2022: 1411-1423 - [c103]Andres Diaz-Pinto, Pritesh Mehta, Sachidanand Alle, Muhammad Asad, Richard Brown, Vishwesh Nath, Alvin Ihsani, Michela Antonelli, Daniel Palkovics, Csaba Pinter, Ron Alkalay, Steve Pieper, Holger R. Roth, Daguang Xu, Prerna Dogra, Tom Vercauteren, Andrew Feng, Abood Quraini, Sébastien Ourselin, M. Jorge Cardoso:
DeepEdit: Deep Editable Learning for Interactive Segmentation of 3D Medical Images. DALI@MICCAI 2022: 11-21 - [c102]Navodini Wijethilake, Aaron Kujawa, Reuben Dorent, Muhammad Asad, Anna Oviedova, Tom Vercauteren, Jonathan Shapey:
Boundary Distance Loss for Intra-/Extra-meatal Segmentation of Vestibular Schwannoma. MLCN@MICCAI 2022: 73-82 - [c101]Virginia Fernandez, Walter Hugo Lopez Pinaya, Pedro Borges, Petru-Daniel Tudosiu, Mark S. Graham, Tom Vercauteren, M. Jorge Cardoso:
Can Segmentation Models Be Trained with Fully Synthetically Generated Data? SASHIMI@MICCAI 2022: 79-90 - [c100]Charalampos Komninos, Theodoros Pissas, Blanca Flores, Edward Bloch, Tom Vercauteren, Sébastien Ourselin, Lyndon Da Cruz, Christos Bergeles:
Intra-operative OCT (iOCT) Super Resolution: A Two-Stage Methodology Leveraging High Quality Pre-operative OCT Scans. OMIA@MICCAI 2022: 105-114 - [c99]Samuel Joutard, Reuben Dorent, Sébastien Ourselin, Tom Vercauteren, Marc Modat:
Driving Points Prediction for Abdominal Probabilistic Registration. MLMI@MICCAI 2022: 288-297 - [c98]Muhammad Asad, Lucas Fidon, Tom Vercauteren:
ECONet: Efficient Convolutional Online Likelihood Network for Scribble-based Interactive Segmentation. MIDL 2022: 35-47 - [c97]Samuel Joutard, Reuben Dorent, Tom Vercauteren, Marc Modat:
A Pareto front based methodology to better assess medical image registration algorithms. Image Processing 2022 - [c96]Samuel Joutard, Thomas S. Pheiffer, Chloé Audigier, Patrick Wohlfahrt, Reuben Dorent, Sebastien Piat, Tom Vercauteren, Marc Modat, Tommaso Mansi:
A Multi-organ Point Cloud Registration Algorithm for Abdominal CT Registration. WBIR 2022: 75-84 - [d2]Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu:
Freehand ultrasound without external trackers. Zenodo, 2022 - [i87]Reuben Dorent, Aaron Kujawa, Marina Ivory, Spyridon Bakas, Nicola Rieke, Samuel Joutard, Ben Glocker, Jorge Cardoso, Marc Modat, Kayhan Batmanghelich, Arseniy Belkov, Maria G. Baldeon Calisto, Jae Won Choi, Benoit M. Dawant, Hexin Dong, Sergio Escalera, Yubo Fan, Lasse Hansen, Mattias P. Heinrich, Smriti Joshi, Victoriya Kashtanova, Hyeongyu Kim, Satoshi Kondo, Christian N. Kruse, Susana K. Lai-Yuen, Hao Li, Han Liu, Buntheng Ly, Ipek Oguz, Hyungseob Shin, Boris Shirokikh, Zixian Su, Guotai Wang, Jianghao Wu, Yanwu Xu, Kai Yao, Li Zhang, Sébastien Ourselin, Jonathan Shapey, Tom Vercauteren:
CrossMoDA 2021 challenge: Benchmark of Cross-Modality Domain Adaptation techniques for Vestibular Schwnannoma and Cochlea Segmentation. CoRR abs/2201.02831 (2022) - [i86]Muhammad Asad, Lucas Fidon, Tom Vercauteren:
ECONet: Efficient Convolutional Online Likelihood Network for Scribble-based Interactive Segmentation. CoRR abs/2201.04584 (2022) - [i85]Daniel Sobotka, Michael Ebner, Ernst Schwartz, Karl-Heinz Nenning, Athena Taymourtash, Tom Vercauteren, Sébastien Ourselin, Gregor Kasprian, Daniela Prayer, Georg Langs, Roxane Licandro:
Motion Correction and Volumetric Reconstruction for Fetal Functional Magnetic Resonance Imaging Data. CoRR abs/2202.05863 (2022) - [i84]Samuel Joutard, Thomas S. Pheiffer, Chloé Audigier, Patrick Wohlfahrt, Reuben Dorent, Sebastien Piat, Tom Vercauteren, Marc Modat, Tommaso Mansi:
A multi-organ point cloud registration algorithm for abdominal CT registration. CoRR abs/2203.08041 (2022) - [i83]Andres Diaz-Pinto, Sachidanand Alle, Alvin Ihsani, Muhammad Asad, Vishwesh Nath, Fernando Pérez-García, Pritesh Mehta, Wenqi Li, Holger R. Roth, Tom Vercauteren, Daguang Xu, Prerna Dogra, Sébastien Ourselin, Andrew Feng, M. Jorge Cardoso:
MONAI Label: A framework for AI-assisted Interactive Labeling of 3D Medical Images. CoRR abs/2203.12362 (2022) - [i82]Lucas Fidon, Michael Aertsen, Florian Kofler, Andrea Bink, Anna L. David, Thomas Deprest, Doaa Emam, Frédéric Guffens, András Jakab, Gregor Kasprian, Patric Kienast, Andrew Melbourne, Bjoern H. Menze, Nada Mufti, Ivana Pogledic, Daniela Prayer, Marlene Stuempflen, Esther Van Elslander, Sébastien Ourselin, Jan Deprest, Tom Vercauteren:
A Dempster-Shafer approach to trustworthy AI with application to fetal brain MRI segmentation. CoRR abs/2204.02779 (2022) - [i81]Kelly Payette, Hongwei Li, Priscille de Dumast, Roxane Licandro, Hui Ji, Md Mahfuzur Rahman Siddiquee, Daguang Xu, Andriy Myronenko, Hao Liu, Yuchen Pei, Lisheng Wang, Ying Peng, Juanying Xie, Huiquan Zhang, Guiming Dong, Hao Fu, Guotai Wang, ZunHyan Rieu, Donghyeon Kim, Hyun Gi Kim, Davood Karimi, Ali Gholipour, Helena R. Torres, Bruno Oliveira, João L. Vilaça, Yang Lin, Netanell Avisdris, Ori Ben-Zvi, Dafna Ben-Bashat, Lucas Fidon, Michael Aertsen, Tom Vercauteren, Daniel Sobotka, Georg Langs, Mireia Alenyà, Maria Inmaculada Villanueva, Oscar Camara, Bella Specktor-Fadida, Leo Joskowicz, Weibin Liao, Lv Yi, Xuesong Li, Moona Mazher, Abdul Qayyum, Domenec Puig, Hamza Kebiri, Zelin Zhang, Xinyi Xu, Dan Wu, KuanLun Liao, YiXuan Wu, JinTai Chen, Yunzhi Xu, Li Zhao, Lana Vasung, Bjoern H. Menze, Meritxell Bach Cuadra, András Jakab:
Fetal Brain Tissue Annotation and Segmentation Challenge Results. CoRR abs/2204.09573 (2022) - [i80]Florian Kofler, Suprosanna Shit, Ivan Ezhov, Lucas Fidon, Izabela Horvath, Rami Al-Maskari, Hongwei Li, Harsharan Bhatia, Timo Loehr, Marie Piraud, Ali Ertürk, Jan Kirschke, Jan Peeken, Tom Vercauteren, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze:
blob loss: instance imbalance aware loss functions for semantic segmentation. CoRR abs/2205.08209 (2022) - [i79]Florian Kofler, Ivan Ezhov, Lucas Fidon, Izabela Horvath, Ezequiel de la Rosa, John LaMaster, Hongwei Li, Tom Finck, Suprosanna Shit, Johannes C. Paetzold, Spyridon Bakas, Marie Piraud, Jan Kirschke, Tom Vercauteren, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze:
Deep Quality Estimation: Creating Surrogate Models for Human Quality Ratings. CoRR abs/2205.10355 (2022) - [i78]Qianye Yang, David Atkinson, Yunguan Fu, Tom Syer, Wen Yan, Shonit Punwani, Matthew J. Clarkson, Dean C. Barratt, Tom Vercauteren, Yipeng Hu:
Cross-Modality Image Registration using a Training-Time Privileged Third Modality. CoRR abs/2207.12901 (2022) - [i77]Muhammad Asad, Reuben Dorent, Tom Vercauteren:
FastGeodis: Fast Generalised Geodesic Distance Transform. CoRR abs/2208.00001 (2022) - [i76]Samuel Joutard, Reuben Dorent, Sébastien Ourselin, Tom Vercauteren, Marc Modat:
Driving Points Prediction For Abdominal Probabilistic Registration. CoRR abs/2208.03232 (2022) - [i75]Navodini Wijethilake, Aaron Kujawa, Reuben Dorent, Muhammad Asad, Anna Oviedova, Tom Vercauteren, Jonathan Shapey:
Boundary Distance Loss for Intra-/Extra-meatal Segmentation of Vestibular Schwannoma. CoRR abs/2208.04680 (2022) - [i74]Virginia Fernandez, Walter Hugo Lopez Pinaya, Pedro Borges, Petru-Daniel Tudosiu, Mark S. Graham, Tom Vercauteren, M. Jorge Cardoso:
Can segmentation models be trained with fully synthetically generated data? CoRR abs/2209.08256 (2022) - [i73]Christopher E. Mower, Theodoros Stouraitis, João Moura, Christian Rauch, Lei Yan, Nazanin Zamani Behabadi, Michael Gienger, Tom Vercauteren, Christos Bergeles, Sethu Vijayakumar:
ROS-PyBullet Interface: A Framework for Reliable Contact Simulation and Human-Robot Interaction. CoRR abs/2210.06887 (2022) - [i72]Charlie Budd, Luis C. García-Peraza-Herrera, Martin Huber, Sébastien Ourselin, Tom Vercauteren:
Rapid and robust endoscopic content area estimation: A lean GPU-based pipeline and curated benchmark dataset. CoRR abs/2210.14771 (2022) - [i71]M. Jorge Cardoso, Wenqi Li, Richard Brown, Nic Ma, Eric Kerfoot, Yiheng Wang, Benjamin Murray, Andriy Myronenko, Can Zhao, Dong Yang, Vishwesh Nath, Yufan He, Ziyue Xu, Ali Hatamizadeh, Wentao Zhu, Yun Liu, Mingxin Zheng, Yucheng Tang, Isaac Yang, Michael Zephyr, Behrooz Hashemian, Sachidanand Alle, Mohammad Zalbagi Darestani, Charlie Budd, Marc Modat, Tom Vercauteren, Guotai Wang, Yiwen Li, Yipeng Hu, Yunguan Fu, Benjamin Gorman, Hans J. Johnson, Brad W. Genereaux, Barbaros S. Erdal, Vikash Gupta, Andres Diaz-Pinto, Andre Dourson, Lena Maier-Hein, Paul F. Jaeger, Michael Baumgartner, Jayashree Kalpathy-Cramer, Mona Flores, Justin S. Kirby, Lee A. D. Cooper, Holger R. Roth, Daguang Xu, David Bericat, Ralf Floca, S. Kevin Zhou, Haris Shuaib, Keyvan Farahani, Klaus H. Maier-Hein, Stephen R. Aylward, Prerna Dogra, Sébastien Ourselin, Andrew Feng:
MONAI: An open-source framework for deep learning in healthcare. CoRR abs/2211.02701 (2022) - [i70]Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu:
Trackerless freehand ultrasound with sequence modelling and auxiliary transformation over past and future frames. CoRR abs/2211.04867 (2022) - 2021
- [j59]Jonathan Shapey, Thomas Dowrick, Rémi Delaunay, Eleanor C. Mackle, Stephen A. Thompson, Mirek Janatka, Roland Guichard, Anastasis Georgoulas, David Pérez-Suárez, Robert Bradford, Shakeel R. Saeed, Sébastien Ourselin, Matthew J. Clarkson, Tom Vercauteren:
Integrated multi-modality image-guided navigation for neurosurgery: open-source software platform using state-of-the-art clinical hardware. Int. J. Comput. Assist. Radiol. Surg. 16(8): 1347-1356 (2021) - [j58]Fernando Pérez-García, Reuben Dorent, Michele Rizzi, Francesco Cardinale, Valerio Frazzini, Vincent Navarro, Caroline Essert, Irène Ollivier, Tom Vercauteren, Rachel Sparks, John S. Duncan, Sébastien Ourselin:
A self-supervised learning strategy for postoperative brain cavity segmentation simulating resections. Int. J. Comput. Assist. Radiol. Surg. 16(10): 1653-1661 (2021) - [j57]Reuben Dorent, Thomas C. Booth, Wenqi Li, Carole H. Sudre, Sina Kafiabadi, Manuel Jorge Cardoso, Sébastien Ourselin, Tom Vercauteren:
Learning joint segmentation of tissues and brain lesions from task-specific hetero-modal domain-shifted datasets. Medical Image Anal. 67: 101862 (2021) - [j56]Kerstin Kläser, Thomas Varsavsky, Pawel Markiewicz, Tom Vercauteren, Alexander Hammers, David Atkinson, Kris Thielemans, Brian F. Hutton, Manuel Jorge Cardoso, Sébastien Ourselin:
Imitation learning for improved 3D PET/MR attenuation correction. Medical Image Anal. 71: 102079 (2021) - [j55]Xiangde Luo, Guotai Wang, Tao Song, Jingyang Zhang, Michael Aertsen, Jan Deprest, Sébastien Ourselin, Tom Vercauteren, Shaoting Zhang:
MIDeepSeg: Minimally interactive segmentation of unseen objects from medical images using deep learning. Medical Image Anal. 72: 102102 (2021) - [j54]Ran Gu, Guotai Wang, Tao Song, Rui Huang, Michael Aertsen, Jan Deprest, Sébastien Ourselin, Tom Vercauteren, Shaoting Zhang:
CA-Net: Comprehensive Attention Convolutional Neural Networks for Explainable Medical Image Segmentation. IEEE Trans. Medical Imaging 40(2): 699-711 (2021) - [j53]Luis C. García-Peraza-Herrera, Lucas Fidon, Claudia D'Ettorre, Danail Stoyanov, Tom Vercauteren, Sébastien Ourselin:
Image Compositing for Segmentation of Surgical Tools Without Manual Annotations. IEEE Trans. Medical Imaging 40(5): 1450-1460 (2021) - [j52]Agnieszka Barbara Szczotka, Dzhoshkun Ismail Shakir, Matthew J. Clarkson, Stephen P. Pereira, Tom Vercauteren:
Zero-Shot Super-Resolution With a Physically-Motivated Downsampling Kernel for Endomicroscopy. IEEE Trans. Medical Imaging 40(7): 1863-1874 (2021) - [c95]Lucas Fidon, Suprosanna Shit, Ivan Ezhov, Johannes C. Paetzold, Sébastien Ourselin, Tom Vercauteren:
Generalized Wasserstein Dice Loss, Test-Time Augmentation, and Transformers for the BraTS 2021 Challenge. BrainLes@MICCAI (2) 2021: 187-196 - [c94]Qianye Yang, Tom Vercauteren, Yunguan Fu, Francesco Giganti, Nooshin Ghavami, Vasilis Stavrinides, Caroline M. Moore, Matthew J. Clarkson, Dean C. Barratt, Yipeng Hu:
Morphological Change Forecasting For Prostate Glands Using Feature-Based Registration And Kernel Density Extrapolation. ISBI 2021: 1072-1076 - [c93]Martin Huber, John Bason Mitchell, Ross Henry, Sébastien Ourselin, Tom Vercauteren, Christos Bergeles:
Homography-based Visual Servoing with Remote Center of Motion for Semi-autonomous Robotic Endoscope Manipulation. ISMR 2021: 1-7 - [c92]Charalampos Komninos, Theodoros Pissas, Blanca Flores, Edward Bloch, Tom Vercauteren, Sébastien Ourselin, Lyndon Da Cruz, Christos Bergeles:
Intra-operative OCT (iOCT) Image Quality Enhancement: A Super-Resolution Approach Using High Quality iOCT 3D Scans. OMIA@MICCAI 2021: 21-31 - [c91]Helena Williams, Laura Cattani, Tom Vercauteren, Jan Deprest, Jan D'hooge:
Automatic Tomographic Ultrasound Imaging Sequence Extraction of the Anal Sphincter. ASMUS@MICCAI 2021: 35-44 - [c90]Lucas Fidon, Michael Aertsen, Nada Mufti, Thomas Deprest, Doaa Emam, Frédéric Guffens, Ernst Schwartz, Michael Ebner, Daniela Prayer, Gregor Kasprian, Anna L. David, Andrew Melbourne, Sébastien Ourselin, Jan Deprest, Georg Langs, Tom Vercauteren:
Distributionally Robust Segmentation of Abnormal Fetal Brain 3D MRI. UNSURE/PIPPI@MICCAI 2021: 263-273 - [c89]Helena Williams, João Pedrosa, Laura Cattani, Susanne Housmans, Tom Vercauteren, Jan Deprest, Jan D'hooge:
Interactive Segmentation via Deep Learning and B-Spline Explicit Active Surfaces. MICCAI (1) 2021: 315-325 - [c88]Reuben Dorent, Samuel Joutard, Jonathan Shapey, Aaron Kujawa, Marc Modat, Sébastien Ourselin, Tom Vercauteren:
Inter Extreme Points Geodesics for End-to-End Weakly Supervised Image Segmentation. MICCAI (2) 2021: 615-624 - [c87]Lucas Fidon, Michael Aertsen, Doaa Emam, Nada Mufti, Frédéric Guffens, Thomas Deprest, Philippe Demaerel, Anna L. David, Andrew Melbourne, Sébastien Ourselin, Jan Deprest, Tom Vercauteren:
Label-Set Loss Functions for Partial Supervision: Application to Fetal Brain 3D MRI Parcellation. MICCAI (2) 2021: 647-657 - [i69]Qianye Yang, Tom Vercauteren, Yunguan Fu, Francesco Giganti, Nooshin Ghavami, Vasilis Stavrinides, Caroline M. Moore, Matthew J. Clarkson, Dean C. Barratt, Yipeng Hu:
Morphological Change Forecasting for Prostate Glands using Feature-based Registration and Kernel Density Extrapolation. CoRR abs/2101.06425 (2021) - [i68]M. Jorge Cardoso, Marc Modat, Tom Vercauteren, Sébastien Ourselin:
Scale factor point spread function matching: Beyond aliasing in image resampling. CoRR abs/2101.06440 (2021) - [i67]Luis C. García-Peraza-Herrera, Lucas Fidon, Claudia D'Ettorre, Danail Stoyanov, Tom Vercauteren, Sébastien Ourselin:
Image Compositing for Segmentation of Surgical Tools without Manual Annotations. CoRR abs/2102.09528 (2021) - [i66]Luis C. García-Peraza-Herrera, Martin Everson, Laurence B. Lovat, Hsiu-Po Wang, Wen-Lun Wang, Rehan J. Haidry, Danail Stoyanov, Sébastien Ourselin, Tom Vercauteren:
Intrapapillary Capillary Loop Classification in Magnification Endoscopy: Open Dataset and Baseline Methodology. CoRR abs/2102.09963 (2021) - [i65]Marta Bianca Maria Ranzini, Lucas Fidon, Sébastien Ourselin, Marc Modat, Tom Vercauteren:
MONAIfbs: MONAI-based fetal brain MRI deep learning segmentation. CoRR abs/2103.13314 (2021) - [i64]Agnieszka Barbara Szczotka, Dzhoshkun Ismail Shakir, Matthew J. Clarkson, Stephen P. Pereira, Tom Vercauteren:
Zero-shot super-resolution with a physically-motivated downsampling kernel for endomicroscopy. CoRR abs/2103.14015 (2021) - [i63]Xiangde Luo, Guotai Wang, Tao Song, Jingyang Zhang, Michael Aertsen, Jan Deprest, Sébastien Ourselin, Tom Vercauteren, Shaoting Zhang:
MIDeepSeg: Minimally Interactive Segmentation of Unseen Objects from Medical Images Using Deep Learning. CoRR abs/2104.12166 (2021) - [i62]Adrià Casamitjana, Marco Lorenzi, Sebastiano Ferraris, Loïc Peter, Marc Modat, Allison Stevens, Bruce Fischl, Tom Vercauteren, Juan Eugenio Iglesias:
Robust joint registration of multiple stains and MRI for multimodal 3D histology reconstruction: Application to the Allen human brain atlas. CoRR abs/2104.14873 (2021) - [i61]Fernando Pérez-García, Reuben Dorent, Michele Rizzi, Francesco Cardinale, Valerio Frazzini, Vincent Navarro, Caroline Essert, Irène Ollivier, Tom Vercauteren, Rachel Sparks, John S. Duncan, Sébastien Ourselin:
A self-supervised learning strategy for postoperative brain cavity segmentation simulating resections. CoRR abs/2105.11239 (2021) - [i60]Reuben Dorent, Samuel Joutard, Jonathan Shapey, Aaron Kujawa, Marc Modat, Sébastien Ourselin, Tom Vercauteren:
Inter Extreme Points Geodesics for Weakly Supervised Segmentation. CoRR abs/2107.00583 (2021) - [i59]Caspar Gruijthuijsen, Luis C. García-Peraza-Herrera, Gianni Borghesan, Dominiek Reynaerts, Jan Deprest, Sébastien Ourselin, Tom Vercauteren, Emmanuel B. Vander Poorten:
Autonomous Robotic Endoscope Control based on Semantically Rich Instructions. CoRR abs/2107.02317 (2021) - [i58]Lucas Fidon, Michael Aertsen, Doaa Emam, Nada Mufti, Frédéric Guffens, Thomas Deprest, Philippe Demaerel, Anna L. David, Andrew Melbourne, Sébastien Ourselin, Jan Deprest, Tom Vercauteren:
Label-set Loss Functions for Partial Supervision: Application to Fetal Brain 3D MRI Parcellation. CoRR abs/2107.03846 (2021) - [i57]Lucas Fidon, Michael Aertsen, Nada Mufti, Thomas Deprest, Doaa Emam, Frédéric Guffens, Ernst Schwartz, Michael Ebner, Daniela Prayer, Gregor Kasprian, Anna L. David, Andrew Melbourne, Sébastien Ourselin, Jan Deprest, Georg Langs, Tom Vercauteren:
Distributionally Robust Segmentation of Abnormal Fetal Brain 3D MRI. CoRR abs/2108.04175 (2021) - [i56]Peichao Li, Michael Ebner, Philip J. Noonan, Conor C. Horgan, Anisha Bahl, Sébastien Ourselin, Jonathan Shapey, Tom Vercauteren:
Deep Learning Approach for Hyperspectral Image Demosaicking, Spectral Correction and High-resolution RGB Reconstruction. CoRR abs/2109.01403 (2021) - [i55]Martin Huber, Sébastien Ourselin, Christos Bergeles, Tom Vercauteren:
Deep Homography Estimation in Dynamic Surgical Scenes for Laparoscopic Camera Motion Extraction. CoRR abs/2109.15098 (2021) - [i54]Helena Williams, João Pedrosa, Laura Cattani, Susanne Housmans, Tom Vercauteren, Jan Deprest, Jan D'hooge:
Interactive Segmentation via Deep Learning and B-Spline Explicit Active Surfaces. CoRR abs/2110.12939 (2021) - [i53]Lucas Fidon, Michael Aertsen, Suprosanna Shit, Philippe Demaerel, Sébastien Ourselin, Jan Deprest, Tom Vercauteren:
Partial supervision for the FeTA challenge 2021. CoRR abs/2111.02408 (2021) - [i52]Lucas Fidon, Suprosanna Shit, Ivan Ezhov, Johannes C. Paetzold, Sébastien Ourselin, Tom Vercauteren:
Generalized Wasserstein Dice Loss, Test-time Augmentation, and Transformers for the BraTS 2021 challenge. CoRR abs/2112.13054 (2021) - 2020
- [j51]Luis C. García-Peraza-Herrera, Martin Everson, Laurence B. Lovat, Hsiu-Po Wang, Wen-Lun Wang, Rehan J. Haidry, Danail Stoyanov, Sébastien Ourselin, Tom Vercauteren:
Intrapapillary capillary loop classification in magnification endoscopy: open dataset and baseline methodology. Int. J. Comput. Assist. Radiol. Surg. 15(4): 651-659 (2020) - [j50]Sophia Bano, Francisco Vasconcelos, Emmanuel B. Vander Poorten, Tom Vercauteren, Sébastien Ourselin, Jan Deprest, Danail Stoyanov:
FetNet: a recurrent convolutional network for occlusion identification in fetoscopic videos. Int. J. Comput. Assist. Radiol. Surg. 15(5): 791-801 (2020) - [j49]Agnieszka Barbara Szczotka, Dzhoshkun Ismail Shakir, Daniele Ravì, Matthew J. Clarkson, Stephen P. Pereira, Tom Vercauteren:
Learning from irregularly sampled data for endomicroscopy super-resolution: a comparative study of sparse and dense approaches. Int. J. Comput. Assist. Radiol. Surg. 15(7): 1167-1175 (2020) - [j48]Hari McGrath, Peichao Li, Reuben Dorent, Robert Bradford, Shakeel R. Saeed, Sotirios Bisdas, Sébastien Ourselin, Jonathan Shapey, Tom Vercauteren:
Manual segmentation versus semi-automated segmentation for quantifying vestibular schwannoma volume on MRI. Int. J. Comput. Assist. Radiol. Surg. 15(9): 1445-1455 (2020) - [j47]Mirza Awais Ahmad, Mouloud Ourak, Caspar Gruijthuijsen, Jan Deprest, Tom Vercauteren, Emmanuel B. Vander Poorten:
Deep learning-based monocular placental pose estimation: towards collaborative robotics in fetoscopy. Int. J. Comput. Assist. Radiol. Surg. 15(9): 1561-1571 (2020) - [j46]Sophia Bano, Francisco Vasconcelos, Marcel Tella-Amo, George Dwyer, Caspar Gruijthuijsen, Emmanuel B. Vander Poorten, Tom Vercauteren, Sébastien Ourselin, Jan Deprest, Danail Stoyanov:
Deep learning-based fetoscopic mosaicking for field-of-view expansion. Int. J. Comput. Assist. Radiol. Surg. 15(11): 1807-1816 (2020) - [j45]Marta Bianca Maria Ranzini, Johann Henckel, Michael Ebner, M. Jorge Cardoso, Amanda Isaac, Tom Vercauteren, Sébastien Ourselin, Alister Hart, Marc Modat:
Automated postoperative muscle assessment of hip arthroplasty patients using multimodal imaging joint segmentation. Comput. Methods Programs Biomed. 183 (2020) - [j44]François Chadebecq, Francisco Vasconcelos, Rene M. Lacher, Efthymios Maneas, Adrien E. Desjardins, Sébastien Ourselin, Tom Vercauteren, Danail Stoyanov:
Refractive Two-View Reconstruction for Underwater 3D Vision. Int. J. Comput. Vis. 128(5): 1101-1117 (2020) - [j43]Yunguan Fu, Nina Montaña Brown, Shaheer U. Saeed, Adrià Casamitjana, Zachary Baum, Rémi Delaunay, Qianye Yang, Alexander Grimwood, Zhe Min, Stefano B. Blumberg, Juan Eugenio Iglesias, Dean C. Barratt, Ester Bonmati, Daniel C. Alexander, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu:
DeepReg: a deep learning toolkit for medical image registration. J. Open Source Softw. 5(55): 2705 (2020) - [j42]Antonios Perperidis, Kevin Dhaliwal, Stephen McLaughlin, Tom Vercauteren:
Image computing for fibre-bundle endomicroscopy: A review. Medical Image Anal. 62: 101620 (2020) - [j41]Michael Ebner, Guotai Wang, Wenqi Li, Michael Aertsen, Premal A. Patel, Rosalind Aughwane, Andrew Melbourne, Tom Doel, Steven Dymarkowski, Paolo De Coppi, Anna L. David, Jan Deprest, Sébastien Ourselin, Tom Vercauteren:
An automated framework for localization, segmentation and super-resolution reconstruction of fetal brain MRI. NeuroImage 206 (2020) - [j40]Tom Vercauteren, Mathias Unberath, Nicolas Padoy, Nassir Navab:
CAI4CAI: The Rise of Contextual Artificial Intelligence in Computer-Assisted Interventions. Proc. IEEE 108(1): 198-214 (2020) - [c86]Julie Legrand, Dries Dirckx, Maarten Durt, Mouloud Ourak, Jan Deprest, Sébastien Ourselin, Jun Qian, Tom Vercauteren, Emmanuel B. Vander Poorten:
Active Handheld Flexible Fetoscope-Design and Control Based on a Modified Generalized Prandtl-Ishlinski Model. AIM 2020: 367-374 - [c85]Lucas Fidon, Sébastien Ourselin, Tom Vercauteren:
Generalized Wasserstein Dice Score, Distributionally Robust Deep Learning, and Ranger for Brain Tumor Segmentation: BraTS 2020 Challenge. BrainLes@MICCAI (2) 2020: 200-214 - [c84]Helena Williams, Laura Cattani, Mohammad Yaqub, Carole H. Sudre, Tom Vercauteren, Jan Deprest, Jan D'hooge:
Automatic C-Plane Detection in Pelvic Floor Transperineal Volumetric Ultrasound. ASMUS/PIPPI@MICCAI 2020: 136-145 - [c83]Hassna Irzan, Lucas Fidon, Tom Vercauteren, Sébastien Ourselin, Neil Marlow, Andrew Melbourne:
Min-Cut Max-Flow for Network Abnormality Detection: Application to Preterm Birth. UNSURE/GRAIL@MICCAI 2020: 164-173 - [c82]Qianye Yang, Yunguan Fu, Francesco Giganti, Nooshin Ghavami, Qingchao Chen, J. Alison Noble, Tom Vercauteren, Dean C. Barratt, Yipeng Hu:
Longitudinal Image Registration with Temporal-Order and Subject-Specificity Discrimination. MICCAI (3) 2020: 243-252 - [c81]Guotai Wang, Michael Aertsen, Jan Deprest, Sébastien Ourselin, Tom Vercauteren, Shaoting Zhang:
Uncertainty-Guided Efficient Interactive Refinement of Fetal Brain Segmentation from Stacks of MRI Slices. MICCAI (4) 2020: 279-288 - [c80]Reuben Dorent, Samuel Joutard, Jonathan Shapey, Sotirios Bisdas, Neil Kitchen, Robert Bradford, Shakeel R. Saeed, Marc Modat, Sébastien Ourselin, Tom Vercauteren:
Scribble-Based Domain Adaptation via Co-segmentation. MICCAI (1) 2020: 479-489 - [c79]Rémi Delaunay, Yipeng Hu, Tom Vercauteren:
An Unsupervised Approach to Ultrasound Elastography with End-to-end Strain Regularisation. MICCAI (3) 2020: 573-582 - [c78]Sophia Bano, Francisco Vasconcelos, Luke M. Shepherd, Emmanuel B. Vander Poorten, Tom Vercauteren, Sébastien Ourselin, Anna L. David, Jan Deprest, Danail Stoyanov:
Deep Placental Vessel Segmentation for Fetoscopic Mosaicking. MICCAI (3) 2020: 763-773 - [c77]David Drobny, Marta Ranzini, Amanda Isaac, Tom Vercauteren, Sébastien Ourselin, David Choi, Marc Modat:
Towards Automated Spine Mobility Quantification: A Locally Rigid CT to X-ray Registration Framework. WBIR 2020: 67-77 - [d1]Yunguan Fu, Nina Montaña Brown, Shaheer U. Saeed, Adrià Casamitjana, Zachary M. C. Baum, Rémi Delaunay, Qianye Yang, Alexander Grimwood, Zhe Min, Stefano B. Blumberg, Juan Eugenio Iglesias, Dean C. Barratt, Ester Bonmati, Daniel C. Alexander, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu:
DeepReg: a deep learning toolkit for medical image registration. Zenodo, 2020 - [i51]Lucas Fidon, Sébastien Ourselin, Tom Vercauteren:
SGD with Hardness Weighted Sampling for Distributionally Robust Deep Learning. CoRR abs/2001.02658 (2020) - [i50]Guotai Wang, Michael Aertsen, Jan Deprest, Sébastien Ourselin, Tom Vercauteren, Shaoting Zhang:
Uncertainty-Guided Efficient Interactive Refinement of Fetal Brain Segmentation from Stacks of MRI Slices. CoRR abs/2007.00833 (2020) - [i49]Reuben Dorent, Samuel Joutard, Jonathan Shapey, Sotirios Bisdas, Neil Kitchen, Robert Bradford, Shakeel R. Saeed, Marc Modat, Sébastien Ourselin, Tom Vercauteren:
Scribble-based Domain Adaptation via Co-segmentation. CoRR abs/2007.03632 (2020) - [i48]Sophia Bano, Francisco Vasconcelos, Luke M. Shepherd, Emmanuel B. Vander Poorten, Tom Vercauteren, Sébastien Ourselin, Anna L. David, Jan Deprest, Danail Stoyanov:
Deep Placental Vessel Segmentation for Fetoscopic Mosaicking. CoRR abs/2007.04349 (2020) - [i47]Sofie Tilborghs, Ine Dirks, Lucas Fidon, Siri Willems, Tom Eelbode, Jeroen Bertels, Bart Ilsen, Arne Brys, Adriana Dubbeldam, Nico Buls, Panagiotis Gonidakis, Sebastián Amador Sánchez, Annemiek Snoeckx, Paul M. Parizel, Johan de Mey, Dirk Vandermeulen, Tom Vercauteren, David Robben, Dirk Smeets, Frederik Maes, Jef Vandemeulebroucke, Paul Suetens:
Comparative study of deep learning methods for the automatic segmentation of lung, lesion and lesion type in CT scans of COVID-19 patients. CoRR abs/2007.15546 (2020) - [i46]Qianye Yang, Yunguan Fu, Francesco Giganti, Nooshin Ghavami, Qingchao Chen, J. Alison Noble, Tom Vercauteren, Dean C. Barratt, Yipeng Hu:
Longitudinal Image Registration with Temporal-order and Subject-specificity Discrimination. CoRR abs/2008.13002 (2020) - [i45]Nina Montaña Brown, Yunguan Fu, Shaheer U. Saeed, Adrià Casamitjana, Zachary M. C. Baum, Rémi Delaunay, Qianye Yang, Alex Grimwood, Zhe Min, Ester Bonmati, Tom Vercauteren, Matthew J. Clarkson, Yipeng Hu:
Introduction to Medical Image Registration with DeepReg, Between Old and New. CoRR abs/2009.01924 (2020) - [i44]Luis C. García-Peraza-Herrera, Wenqi Li, Caspar Gruijthuijsen, Alain Devreker, George Attilakos, Jan Deprest, Emmanuel B. Vander Poorten, Danail Stoyanov, Tom Vercauteren, Sébastien Ourselin:
Real-Time Segmentation of Non-Rigid Surgical Tools based on Deep Learning and Tracking. CoRR abs/2009.03016 (2020) - [i43]Reuben Dorent, Thomas C. Booth, Wenqi Li, Carole H. Sudre, Sina Kafiabadi, Manuel Jorge Cardoso, Sébastien Ourselin, Tom Vercauteren:
Learning joint segmentation of tissues and brain lesions from task-specific hetero-modal domain-shifted datasets. CoRR abs/2009.04009 (2020) - [i42]Ran Gu, Guotai Wang, Tao Song, Rui Huang, Michael Aertsen, Jan Deprest, Sébastien Ourselin, Tom Vercauteren, Shaoting Zhang:
CA-Net: Comprehensive Attention Convolutional Neural Networks for Explainable Medical Image Segmentation. CoRR abs/2009.10549 (2020) - [i41]Conor C. Horgan, Magnus Jensen, Anika Nagelkerke, Jean-Phillipe St-Pierre, Tom Vercauteren, Molly M. Stevens, Mads S. Bergholt:
High-throughput molecular imaging via deep learning enabled Raman spectroscopy. CoRR abs/2009.13318 (2020) - [i40]Lucas Fidon, Sébastien Ourselin, Tom Vercauteren:
Generalized Wasserstein Dice Score, Distributionally Robust Deep Learning, and Ranger for brain tumor segmentation: BraTS 2020 challenge. CoRR abs/2011.01614 (2020) - [i39]Yunguan Fu, Nina Montaña Brown, Shaheer U. Saeed, Adrià Casamitjana, Zachary M. C. Baum, Rémi Delaunay, Qianye Yang, Alexander Grimwood, Zhe Min, Stefano B. Blumberg, Juan Eugenio Iglesias, Dean C. Barratt, Ester Bonmati, Daniel C. Alexander, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu:
DeepReg: a deep learning toolkit for medical image registration. CoRR abs/2011.02580 (2020) - [i38]Abel Díaz Berenguer, Hichem Sahli, Boris Joukovsky, Maryna Kvasnytsia, Ine Dirks, Mitchel Alioscha-Pérez, Nikos Deligiannis, Panagiotis Gonidakis, Sebastián Amador Sánchez, Redona Brahimetaj, Evgenia Papavasileiou, Jonathan Cheung-Wai Chan, Fei Li, Shangzhen Song, Yixin Yang, Sofie Tilborghs, Siri Willems, Tom Eelbode, Jeroen Bertels, Dirk Vandermeulen, Frederik Maes, Paul Suetens, Lucas Fidon, Tom Vercauteren, David Robben, Arne Brys, Dirk Smeets, Bart Ilsen, Nico Buls, Nina Watté, Johan de Mey, Annemiek Snoeckx, Paul M. Parizel, Julien Guiot, Louis Deprez, Paul Meunier, Stefaan Gryspeerdt, Kristof De Smet, Bart Jansen, Jef Vandemeulebroucke:
Explainable-by-design Semi-Supervised Representation Learning for COVID-19 Diagnosis from CT Imaging. CoRR abs/2011.11719 (2020) - [i37]Loïc Peter, Marcel Tella-Amo, Dzhoshkun Ismail Shakir, Jan Deprest, Sébastien Ourselin, Juan Eugenio Iglesias, Tom Vercauteren:
Active Annotation of Informative Overlapping Frames in Video Mosaicking Applications. CoRR abs/2012.15343 (2020)
2010 – 2019
- 2019
- [j39]Guotai Wang, Wenqi Li, Sébastien Ourselin, Tom Vercauteren:
Automatic Brain Tumor Segmentation Based on Cascaded Convolutional Neural Networks With Uncertainty Estimation. Frontiers Comput. Neurosci. 13: 56 (2019) - [j38]Julie Legrand, Allan Javaux, Mouloud Ourak, Dirk Wenmakers, Tom Vercauteren, Jan Deprest, Sébastien Ourselin, Kathleen Denis, Emmanuel B. Vander Poorten:
Handheld Active Add-On Control Unit for a Cable-Driven Flexible Endoscope. Frontiers Robotics AI 6: 87 (2019) - [j37]Guotai Wang, Wenqi Li, Michael Aertsen, Jan Deprest, Sébastien Ourselin, Tom Vercauteren:
Aleatoric uncertainty estimation with test-time augmentation for medical image segmentation with convolutional neural networks. Neurocomputing 338: 34-45 (2019) - [j36]Daniele Ravì, Agnieszka Barbara Szczotka, Stephen P. Pereira, Tom Vercauteren:
Adversarial training with cycle consistency for unsupervised super-resolution in endomicroscopy. Medical Image Anal. 53: 123-131 (2019) - [j35]Guotai Wang, Maria A. Zuluaga, Wenqi Li, Rosalind Pratt, Premal A. Patel, Michael Aertsen, Tom Doel, Anna L. David, Jan Deprest, Sébastien Ourselin, Tom Vercauteren:
DeepIGeoS: A Deep Interactive Geodesic Framework for Medical Image Segmentation. IEEE Trans. Pattern Anal. Mach. Intell. 41(7): 1559-1572 (2019) - [j34]Sergio Portolés Diez, Gianni Borghesan, Luc Joyeux, Christel Meuleman, Jan Deprest, Danail Stoyanov, Sébastien Ourselin, Tom Vercauteren, Dominiek Reynaerts, Emmanuel B. Vander Poorten:
Evaluation of Haptic Feedback on Bimanually Teleoperated Laparoscopy for Endometriosis Surgery. IEEE Trans. Biomed. Eng. 66(5): 1207-1221 (2019) - [c76]Mirza Awais Ahmad, Mouloud Ourak, Caspar Gruijthuijsen, Julie Legrand, Tom Vercauteren, Jan Deprest, Sébastien Ourselin, Emmanuel B. Vander Poorten:
Design and Shared Control of a Flexible Endoscope with Autonomous Distal Tip Alignment. ICAR 2019: 647-653 - [c75]George Dwyer, Richard J. Colchester, Erwin J. Alles, Efthymios Maneas, Sébastien Ourselin, Tom Vercauteren, Jan Deprest, Emmanuel B. Vander Poorten, Paolo De Coppi, Adrien E. Desjardins, Danail Stoyanov:
Robotic Control of a Multi-Modal Rigid Endoscope Combining Optical Imaging with All-Optical Ultrasound. ICRA 2019: 3882-3888 - [c74]T. Vandebroek, Mouloud Ourak, Caspar Gruijthuijsen, Allan Javaux, Julie Legrand, Tom Vercauteren, Sébastien Ourselin, Jan Deprest, Emmanuel B. Vander Poorten:
Macro-Micro Multi-Arm Robot for Single-Port Access Surgery. IROS 2019: 425-432 - [c73]Premal A. Patel, Dimitra Flouri, Adam Rennie, Fergus Robertson, Lauren Davies, Vijeya Ganesan, Sanjay Bhate, Paolo De Coppi, Tom Vercauteren, Andrew Melbourne:
Quantifying the Intra-Operative Hemodynamic Effects of Glue Embolization in Vein of Galen Malformations. ISBI 2019: 754-758 - [c72]Kerstin Kläser, Thomas Varsavsky, Pawel Markiewicz, Tom Vercauteren, David Atkinson, Kris Thielemans, Brian F. Hutton, M. Jorge Cardoso, Sébastien Ourselin:
Improved MR to CT Synthesis for PET/MR Attenuation Correction Using Imitation Learning. SASHIMI@MICCAI 2019: 13-21 - [c71]Reuben Dorent, Samuel Joutard, Marc Modat, Sébastien Ourselin, Tom Vercauteren:
Hetero-Modal Variational Encoder-Decoder for Joint Modality Completion and Segmentation. MICCAI (2) 2019: 74-82 - [c70]Daniel Sobotka, Roxane Licandro, Michael Ebner, Ernst Schwartz, Tom Vercauteren, Sébastien Ourselin, Gregor Kasprian, Daniela Prayer, Georg Langs:
Reproducibility of Functional Connectivity Estimates in Motion Corrected Fetal fMRI. SUSI/PIPPI@MICCAI 2019: 123-132 - [c69]David Drobny, Marta Ranzini, Sébastien Ourselin, Tom Vercauteren, Marc Modat:
Landmark-Based Evaluation of a Block-Matching Registration Framework on the RESECT Pre- and Intra-operative Brain Image Data Set. LABELS/HAL-MICCAI/CuRIOUS@MICCAI 2019: 136-144 - [c68]Guotai Wang, Jonathan Shapey, Wenqi Li, Reuben Dorent, Alex Demitriadis, Sotirios Bisdas, Ian Paddick, Robert Bradford, Shaoting Zhang, Sébastien Ourselin, Tom Vercauteren:
Automatic Segmentation of Vestibular Schwannoma from T2-Weighted MRI by Deep Spatial Attention with Hardness-Weighted Loss. MICCAI (2) 2019: 264-272 - [c67]Sophia Bano, Francisco Vasconcelos, Marcel Tella-Amo, George Dwyer, Caspar Gruijthuijsen, Jan Deprest, Sébastien Ourselin, Emmanuel B. Vander Poorten, Tom Vercauteren, Danail Stoyanov:
Deep Sequential Mosaicking of Fetoscopic Videos. MICCAI (1) 2019: 311-319 - [c66]Samuel Joutard, Reuben Dorent, Amanda Isaac, Sébastien Ourselin, Tom Vercauteren, Marc Modat:
Permutohedral Attention Module for Efficient Non-local Neural Networks. MICCAI (6) 2019: 393-401 - [c65]Yipeng Hu, Eli Gibson, Dean C. Barratt, Mark Emberton, J. Alison Noble, Tom Vercauteren:
Conditional Segmentation in Lieu of Image Registration. MICCAI (2) 2019: 401-409 - [c64]Lucas Fidon, Michael Ebner, Luis C. García-Peraza-Herrera, Marc Modat, Sébastien Ourselin, Tom Vercauteren:
Incompressible Image Registration Using Divergence-Conforming B-Splines. MICCAI (2) 2019: 438-446 - [c63]Dimitra Flouri, David Owen, Rosalind Aughwane, Nada Mufti, Magdalena J. Sokolska, David Atkinson, Giles S. Kendall, Alan Bainbridge, Tom Vercauteren, Anna L. David, Sébastien Ourselin, Andrew Melbourne:
Improved Placental Parameter Estimation Using Data-Driven Bayesian Modelling. MICCAI (3) 2019: 609-616 - [c62]Reuben Dorent, Wenqi Li, Jinendra Ekanayake, Sébastien Ourselin, Tom Vercauteren:
Learning joint lesion and tissue segmentation from task-specific hetero-modal datasets. MIDL 2019: 164-174 - [e4]M. Jorge Cardoso, Aasa Feragen, Ben Glocker, Ender Konukoglu, Ipek Oguz, Gozde B. Unal, Tom Vercauteren:
International Conference on Medical Imaging with Deep Learning, MIDL 2019, 8-10 July 2019, London, United Kingdom. Proceedings of Machine Learning Research 102, PMLR 2019 [contents] - [i36]Daniele Ravì, Agnieszka Barbara Szczotka, Stephen P. Pereira, Tom Vercauteren:
Adversarial training with cycle consistency for unsupervised super-resolution in endomicroscopy. CoRR abs/1901.06988 (2019) - [i35]Guotai Wang, Jonathan Shapey, Wenqi Li, Reuben Dorent, Alex Demitriadis, Sotirios Bisdas, Ian Paddick, Robert Bradford, Sébastien Ourselin, Tom Vercauteren:
Automatic Segmentation of Vestibular Schwannoma from T2-Weighted MRI by Deep Spatial Attention with Hardness-Weighted Loss. CoRR abs/1906.03906 (2019) - [i34]Yipeng Hu, Eli Gibson, Dean C. Barratt, Mark Emberton, J. Alison Noble, Tom Vercauteren:
Conditional Segmentation in Lieu of Image Registration. CoRR abs/1907.00438 (2019) - [i33]Samuel Joutard, Reuben Dorent, Amanda Isaac, Sébastien Ourselin, Tom Vercauteren, Marc Modat:
Permutohedral Attention Module for Efficient Non-Local Neural Networks. CoRR abs/1907.00641 (2019) - [i32]Reuben Dorent, Wenqi Li, Jinendra Ekanayake, Sébastien Ourselin, Tom Vercauteren:
Learning joint lesion and tissue segmentation from task-specific hetero-modal datasets. CoRR abs/1907.03327 (2019) - [i31]Sophia Bano, Francisco Vasconcelos, Marcel Tella-Amo, George Dwyer, Caspar Gruijthuijsen, Jan Deprest, Sébastien Ourselin, Emmanuel B. Vander Poorten, Tom Vercauteren, Danail Stoyanov:
Deep Sequential Mosaicking of Fetoscopic Videos. CoRR abs/1907.06543 (2019) - [i30]M. Jorge Cardoso, Aasa Feragen, Ben Glocker, Ender Konukoglu, Ipek Oguz, Gozde B. Unal, Tom Vercauteren:
Medical Imaging with Deep Learning: MIDL 2019 - Extended Abstract Track. CoRR abs/1907.08612 (2019) - [i29]Reuben Dorent, Samuel Joutard, Marc Modat, Sébastien Ourselin, Tom Vercauteren:
Hetero-Modal Variational Encoder-Decoder for Joint Modality Completion and Segmentation. CoRR abs/1907.11150 (2019) - [i28]Kerstin Kläser, Thomas Varsavsky, Pawel Markiewicz, Tom Vercauteren, David Atkinson, Kris Thielemans, Brian F. Hutton, M. Jorge Cardoso, Sébastien Ourselin:
Improved MR to CT synthesis for PET/MR attenuation correction using Imitation Learning. CoRR abs/1908.08431 (2019) - [i27]Tom Vercauteren, Mathias Unberath, Nicolas Padoy, Nassir Navab:
CAI4CAI: The Rise of Contextual Artificial Intelligence in Computer Assisted Interventions. CoRR abs/1910.09031 (2019) - [i26]Agnieszka Barbara Szczotka, Dzhoshkun Ismail Shakir, Daniele Ravì, Matthew J. Clarkson, Stephen P. Pereira, Tom Vercauteren:
Learning from Irregularly Sampled Data for Endomicroscopy Super-resolution: A Comparative Study of Sparse and Dense Approaches. CoRR abs/1911.13169 (2019) - 2018
- [j33]Loïc Peter, Marcel Tella-Amo, Dzhoshkun Ismail Shakir, George Attilakos, Ruwan Wimalasundera, Jan Deprest, Sébastien Ourselin, Tom Vercauteren:
Retrieval and registration of long-range overlapping frames for scalable mosaicking of in vivo fetoscopy. Int. J. Comput. Assist. Radiol. Surg. 13(5): 713-720 (2018) - [j32]Daniele Ravì, Agnieszka Barbara Szczotka, Dzhoshkun Ismail Shakir, Stephen P. Pereira, Tom Vercauteren:
Effective deep learning training for single-image super-resolution in endomicroscopy exploiting video-registration-based reconstruction. Int. J. Comput. Assist. Radiol. Surg. 13(6): 917-924 (2018) - [j31]Francisco Vasconcelos, Patrick Brandao, Tom Vercauteren, Sébastien Ourselin, Jan Deprest, Donald Peebles, Danail Stoyanov:
Towards computer-assisted TTTS: Laser ablation detection for workflow segmentation from fetoscopic video. Int. J. Comput. Assist. Radiol. Surg. 13(10): 1661-1670 (2018) - [j30]Allan Javaux, David Bouget, Caspar Gruijthuijsen, Danail Stoyanov, Tom Vercauteren, Sébastien Ourselin, Jan Deprest, Kathleen Denis, Emmanuel B. Vander Poorten:
A mixed-reality surgical trainer with comprehensive sensing for fetal laser minimally invasive surgery. Int. J. Comput. Assist. Radiol. Surg. 13(12): 1949-1957 (2018) - [j29]Eli Gibson, Wenqi Li, Carole H. Sudre, Lucas Fidon, Dzhoshkun I. Shakir, Guotai Wang, Zach Eaton-Rosen, Robert J. Gray, Tom Doel, Yipeng Hu, Tom Whyntie, Parashkev Nachev, Marc Modat, Dean C. Barratt, Sébastien Ourselin, M. Jorge Cardoso, Tom Vercauteren:
NiftyNet: a deep-learning platform for medical imaging. Comput. Methods Programs Biomed. 158: 113-122 (2018) - [j28]Caspar Gruijthuijsen, Richard J. Colchester, Alain Devreker, Allan Javaux, Efthymios Maneas, Sacha Noimark, Wenfeng Xia, Danail Stoyanov, Dominiek Reynaerts, Jan Deprest, Sébastien Ourselin, Adrien E. Desjardins, Tom Vercauteren, Emmanuel B. Vander Poorten:
Haptic Guidance Based on All-Optical Ultrasound Distance Sensing for Safer Minimally Invasive Fetal Surgery. J. Medical Robotics Res. 3(3-4): 1841001:1-1841001:19 (2018) - [j27]Yipeng Hu, Marc Modat, Eli Gibson, Wenqi Li, Nooshin Ghavami, Ester Bonmati, Guotai Wang, Steven Bandula, Caroline M. Moore, Mark Emberton, Sébastien Ourselin, J. Alison Noble, Dean C. Barratt, Tom Vercauteren:
Weakly-supervised convolutional neural networks for multimodal image registration. Medical Image Anal. 49: 1-13 (2018) - [j26]Juan Eugenio Iglesias, Marc Modat, Loïc Peter, Allison Stevens, Roberto Annunziata, Tom Vercauteren, Ed S. Lein, Bruce Fischl, Sébastien Ourselin:
Joint registration and synthesis using a probabilistic model for alignment of MRI and histological sections. Medical Image Anal. 50: 127-144 (2018) - [j25]Michael Ebner, Karen K. Chung, Ferran Prados, M. Jorge Cardoso, Declan T. Chard, Tom Vercauteren, Sébastien Ourselin:
Volumetric reconstruction from printed films: Enabling 30 year longitudinal analysis in MR neuroimaging. NeuroImage 165: 238-250 (2018) - [j24]Sebastiano Ferraris, Johannes L. van der Merwe, Lennart Van Der Veeken, Ferran Prados, Juan Eugenio Iglesias, Andrew Melbourne, Marco Lorenzi, Marc Modat, Willy Gsell, Jan Deprest, Tom Vercauteren:
A magnetic resonance multi-atlas for the neonatal rabbit brain. NeuroImage 179: 187-198 (2018) - [j23]Julie Legrand, Mouloud Ourak, Allan Javaux, Caspar Gruijthuijsen, Mirza Awais Ahmad, Ben Van Cleynenbreugel, Tom Vercauteren, Jan Deprest, Sébastien Ourselin, Emmanuel B. Vander Poorten:
From a Disposable Ureteroscope to an Active Lightweight Fetoscope - Characterization and Usability Evaluation. IEEE Robotics Autom. Lett. 3(4): 4359-4366 (2018) - [j22]Guotai Wang, Wenqi Li, Maria A. Zuluaga, Rosalind Pratt, Premal A. Patel, Michael Aertsen, Tom Doel, Anna L. David, Jan Deprest, Sébastien Ourselin, Tom Vercauteren:
Interactive Medical Image Segmentation Using Deep Learning With Image-Specific Fine Tuning. IEEE Trans. Medical Imaging 37(7): 1562-1573 (2018) - [c61]Michael Ebner, Marc Modat, Sebastiano Ferraris, Sébastien Ourselin, Tom Vercauteren:
Forward-backward splitting in deformable image registration: A demons approach. ISBI 2018: 1065-1069 - [c60]Yipeng Hu, Marc Modat, Eli Gibson, Nooshin Ghavami, Ester Bonmati, Caroline M. Moore, Mark Emberton, J. Alison Noble, Dean C. Barratt, Tom Vercauteren:
Label-driven weakly-supervised learning for multimodal deformarle image registration. ISBI 2018: 1070-1074 - [c59]Guotai Wang, Wenqi Li, Sébastien Ourselin, Tom Vercauteren:
Automatic Brain Tumor Segmentation Using Convolutional Neural Networks with Test-Time Augmentation. BrainLes@MICCAI (2) 2018: 61-72 - [c58]Juan Eugenio Iglesias, Marco Lorenzi, Sebastiano Ferraris, Loïc Peter, Marc Modat, Allison Stevens, Bruce Fischl, Tom Vercauteren:
Model-Based Refinement of Nonlinear Registrations in 3D Histology Reconstruction. MICCAI (2) 2018: 147-155 - [c57]David Drobny, Tom Vercauteren, Sébastien Ourselin, Marc Modat:
Registration of MRI and iUS Data to Compensate Brain Shift Using a Symmetric Block-Matching Based Approach. POCUS/BIVPCS/CuRIOUS/CPM@MICCAI 2018: 172-178 - [c56]Michael Ebner, Guotai Wang, Wenqi Li, Michael Aertsen, Premal A. Patel, Rosalind Aughwane, Andrew Melbourne, Tom Doel, Anna L. David, Jan Deprest, Sébastien Ourselin, Tom Vercauteren:
An Automated Localization, Segmentation and Reconstruction Framework for Fetal Brain MRI. MICCAI (1) 2018: 313-320 - [c55]Yipeng Hu, Eli Gibson, Nooshin Ghavami, Ester Bonmati, Caroline M. Moore, Mark Emberton, Tom Vercauteren, J. Alison Noble, Dean C. Barratt:
Adversarial Deformation Regularization for Training Image Registration Neural Networks. MICCAI (1) 2018: 774-782 - [c54]Rosalind Aughwane, Magdalena J. Sokolska, Alan Bainbridge, David Atkinson, Giles S. Kendall, Jan Deprest, Tom Vercauteren, Anna L. David, Sébastien Ourselin, Andrew Melbourne:
MRI Measurement of Placental Perfusion and Fetal Blood Oxygen Saturation in Normal Pregnancy and Placental Insufficiency. MICCAI (2) 2018: 913-920 - [c53]Ester Bonmati, Yipeng Hu, Nikhil Sindhwani, Hans Peter Dietz, Jan D'hooge, Dean C. Barratt, Jan Deprest, Tom Vercauteren:
Technical note: automatic segmentation method of pelvic floor levator hiatus in ultrasound using a self-normalising neural network. Image-Guided Procedures 2018: 105760K - [c52]Marcel Tella-Amo, Loïc Peter, Dzhoshkun I. Shakir, Jan Deprest, Danail Stoyanov, Juan Eugenio Iglesias, Tom Vercauteren, Sébastien Ourselin:
Technical note: probabilistic visual and electromagnetic data fusion for robust drift-free sequential mosaicking. Application to fetoscopy. Image-Guided Procedures 2018: 105760I - [c51]Jyotirmoy Banerjee, Premal A. Patel, Fred Ushakov, Donald Peebles, Jan Deprest, Sébastien Ourselin, David J. Hawkes, Tom Vercauteren:
A log-Euclidean and total variation based variational framework for computational sonography. Image Processing 2018: 105740D - [e3]Danail Stoyanov, Zeike Taylor, Bernhard Kainz, Gabriel Maicas, Reinhard R. Beichel, Anne L. Martel, Lena Maier-Hein, Kanwal K. Bhatia, Tom Vercauteren, Ozan Oktay, Gustavo Carneiro, Andrew P. Bradley, Jacinto C. Nascimento, Hang Min, Matthew S. Brown, Colin Jacobs, Bianca Lassen-Schmidt, Kensaku Mori, Jens Petersen, Raúl San José Estépar, Alexander Schmidt-Richberg, Catarina Veiga:
Image Analysis for Moving Organ, Breast, and Thoracic Images - Third International Workshop, RAMBO 2018, Fourth International Workshop, BIA 2018, and First International Workshop, TIA 2018, Held in Conjunction with MICCAI 2018, Granada, Spain, September 16 and 20, 2018, Proceedings. Lecture Notes in Computer Science 11040, Springer 2018, ISBN 978-3-030-00945-8 [contents] - [i25]Juan Eugenio Iglesias, Marc Modat, Loïc Peter, Allison Stevens, Roberto Annunziata, Tom Vercauteren, Ed S. Lein, Bruce Fischl, Sébastien Ourselin:
Joint registration and synthesis using a probabilistic model for alignment of MRI and histological sections. CoRR abs/1801.05284 (2018) - [i24]Jyotirmoy Banerjee, Premal A. Patel, Fred Ushakov, Donald Peebles, Jan Deprest, Sébastien Ourselin, David J. Hawkes, Tom Vercauteren:
A Log-Euclidean and Total Variation based Variational Framework for Computational Sonography. CoRR abs/1802.02088 (2018) - [i23]Loïc Peter, Marcel Tella-Amo, Dzhoshkun Ismail Shakir, George Attilakos, Ruwan Wimalasundera, Jan Deprest, Sébastien Ourselin, Tom Vercauteren:
Retrieval and Registration of Long-Range Overlapping Frames for Scalable Mosaicking of In Vivo Fetoscopy. CoRR abs/1802.10554 (2018) - [i22]Daniele Ravì, Agnieszka Barbara Szczotka, Dzhoshkun Ismail Shakir, Stephen P. Pereira, Tom Vercauteren:
Effective deep learning training for single-image super-resolution in endomicroscopy exploiting video-registration-based reconstruction. CoRR abs/1803.08840 (2018) - [i21]Luis C. García-Peraza-Herrera, Martin Everson, Wenqi Li, Inmanol Luengo, Lorenz Berger, Omer F. Ahmad, Laurence B. Lovat, Hsiu-Po Wang, Wen-Lun Wang, Rehan J. Haidry, Danail Stoyanov, Tom Vercauteren, Sébastien Ourselin:
Interpretable Fully Convolutional Classification of Intrapapillary Capillary Loops for Real-Time Detection of Early Squamous Neoplasia. CoRR abs/1805.00632 (2018) - [i20]Sebastian Bodenstedt, Max Allan, Anthony Agustinos, Xiaofei Du, Luis C. García-Peraza-Herrera, Hannes Kenngott, Thomas Kurmann, Beat P. Müller-Stich, Sébastien Ourselin, Daniil Pakhomov, Raphael Sznitman, Marvin Teichmann, Martin Thoma, Tom Vercauteren, Sandrine Voros, Martin Wagner, Pamela Wochner, Lena Maier-Hein, Danail Stoyanov, Stefanie Speidel:
Comparative evaluation of instrument segmentation and tracking methods in minimally invasive surgery. CoRR abs/1805.02475 (2018) - [i19]Yipeng Hu, Eli Gibson, Nooshin Ghavami, Ester Bonmati, Caroline M. Moore, Mark Emberton, Tom Vercauteren, J. Alison Noble, Dean C. Barratt:
Adversarial Deformation Regularization for Training Image Registration Neural Networks. CoRR abs/1805.10665 (2018) - [i18]Yipeng Hu, Marc Modat, Eli Gibson, Wenqi Li, Nooshin Ghavami, Ester Bonmati, Guotai Wang, Steven Bandula, Caroline M. Moore, Mark Emberton, Sébastien Ourselin, J. Alison Noble, Dean C. Barratt, Tom Vercauteren:
Weakly-Supervised Convolutional Neural Networks for Multimodal Image Registration. CoRR abs/1807.03361 (2018) - [i17]Guotai Wang, Wenqi Li, Michael Aertsen, Jan Deprest, Sébastien Ourselin, Tom Vercauteren:
Aleatoric uncertainty estimation with test-time augmentation for medical image segmentation with convolutional neural networks. CoRR abs/1807.07356 (2018) - [i16]Antonios Perperidis, Kevin Dhaliwal, Stephen McLaughlin, Tom Vercauteren:
Image computing for fibre-bundle endomicroscopy: A review. CoRR abs/1809.00604 (2018) - [i15]Guotai Wang, Wenqi Li, Sébastien Ourselin, Tom Vercauteren:
Automatic Brain Tumor Segmentation using Convolutional Neural Networks with Test-Time Augmentation. CoRR abs/1810.07884 (2018) - 2017
- [j21]Tom Doel, Dzhoshkun I. Shakir, Rosalind Pratt, Michael Aertsen, James Moggridge, Erwin Bellon, Anna L. David, Jan Deprest, Tom Vercauteren, Sébastien Ourselin:
GIFT-Cloud: A data sharing and collaboration platform for medical imaging research. Comput. Methods Programs Biomed. 139: 181-190 (2017) - [j20]Sebastiano Ferraris, Dzhoshkun Ismail Shakir, Johannes L. van der Merwe, Willy Gsell, Jan Deprest, Tom Vercauteren:
Bruker2nifti: Magnetic Resonance Images converter from Bruker ParaVision to Nifti format. J. Open Source Softw. 2(16): 354 (2017) - [j19]George Dwyer, François Chadebecq, Marcel Tella-Amo, Christos Bergeles, Efthymios Maneas, Vijay Pawar, Emmanuel B. Vander Poorten, Jan Deprest, Sébastien Ourselin, Paolo De Coppi, Tom Vercauteren, Danail Stoyanov:
A Continuum Robot and Control Interface for Surgical Assist in Fetoscopic Interventions. IEEE Robotics Autom. Lett. 2(3): 1656-1663 (2017) - [c50]François Chadebecq, Francisco Vasconcelos, George Dwyer, Rene M. Lacher, Sébastien Ourselin, Tom Vercauteren, Danail Stoyanov:
Refractive Structure-from-Motion Through a Flat Refractive Interface. ICCV 2017: 5325-5333 - [c49]Wenqi Li, Guotai Wang, Lucas Fidon, Sébastien Ourselin, M. Jorge Cardoso, Tom Vercauteren:
On the Compactness, Efficiency, and Representation of 3D Convolutional Networks: Brain Parcellation as a Pretext Task. IPMI 2017: 348-360 - [c48]Allan Javaux, Laure Esteveny, David Bouget, Caspar Gruijthuijsen, Danail Stoyanov, Tom Vercauteren, Sébastien Ourselin, Dominiek Reynaerts, Kathleen Denis, Jan Deprest, Emmanuel B. Vander Poorten:
Body wall force sensor for simulated minimally invasive surgery: Application to fetal surgery. IROS 2017: 145-152 - [c47]Luis C. García-Peraza-Herrera, Wenqi Li, Lucas Fidon, Caspar Gruijthuijsen, Alain Devreker, George Attilakos, Jan Deprest, Emmanuel B. Vander Poorten, Danail Stoyanov, Tom Vercauteren, Sébastien Ourselin:
ToolNet: Holistically-nested real-time segmentation of robotic surgical tools. IROS 2017: 5717-5722 - [c46]Juan Eugenio Iglesias, Sebastiano Ferraris, Marc Modat, Willy Gsell, Jan Deprest, Johannes L. van der Merwe, Tom Vercauteren:
Template-Free Estimation of Intracranial Volume: A Preterm Birth Animal Model Study. FIFI/OMIA@MICCAI 2017: 3-13 - [c45]Lucas Fidon, Wenqi Li, Luis C. García-Peraza-Herrera, Jinendra Ekanayake, Neil Kitchen, Sébastien Ourselin, Tom Vercauteren:
Generalised Wasserstein Dice Score for Imbalanced Multi-class Segmentation Using Holistic Convolutional Networks. BrainLes@MICCAI 2017: 64-76 - [c44]Marta Bianca Maria Ranzini, Michael Ebner, M. Jorge Cardoso, Anastasia Fotiadou, Tom Vercauteren, Johann Henckel, Alister Hart, Sébastien Ourselin, Marc Modat:
Joint Multimodal Segmentation of Clinical CT and MR from Hip Arthroplasty Patients. MSKI@MICCAI 2017: 72-84 - [c43]Yipeng Hu, Eli Gibson, Li-Lin Lee, Weidi Xie, Dean C. Barratt, Tom Vercauteren, J. Alison Noble:
Freehand Ultrasound Image Simulation with Spatially-Conditioned Generative Adversarial Networks. CMMI/RAMBO/SWITCH@MICCAI 2017: 105-115 - [c42]Guotai Wang, Wenqi Li, Sébastien Ourselin, Tom Vercauteren:
Automatic Brain Tumor Segmentation Using Cascaded Anisotropic Convolutional Neural Networks. BrainLes@MICCAI 2017: 178-190 - [c41]Carole H. Sudre, Wenqi Li, Tom Vercauteren, Sébastien Ourselin, M. Jorge Cardoso:
Generalised Dice Overlap as a Deep Learning Loss Function for Highly Unbalanced Segmentations. DLMIA/ML-CDS@MICCAI 2017: 240-248 - [c40]Lucas Fidon, Wenqi Li, Luis C. García-Peraza-Herrera, Jinendra Ekanayake, Neil Kitchen, Sébastien Ourselin, Tom Vercauteren:
Scalable Multimodal Convolutional Networks for Brain Tumour Segmentation. MICCAI (3) 2017: 285-293 - [c39]Yipeng Hu, Eli Gibson, Tom Vercauteren, Hashim Uddin Ahmed, Mark Emberton, Caroline M. Moore, J. Alison Noble, Dean C. Barratt:
Intraoperative Organ Motion Models with an Ensemble of Conditional Generative Adversarial Networks. MICCAI (2) 2017: 368-376 - [e2]M. Jorge Cardoso, Tal Arbel, Andrew Melbourne, Hrvoje Bogunovic, Pim Moeskops, Xinjian Chen, Ernst Schwartz, Mona Kathryn Garvin, Emma C. Robinson, Emanuele Trucco, Michael Ebner, Yanwu Xu, Antonios Makropoulos, Adrien E. Desjardins, Tom Vercauteren:
Fetal, Infant and Ophthalmic Medical Image Analysis - International Workshop, FIFI 2017, and 4th International Workshop, OMIA 2017, Held in Conjunction with MICCAI 2017, Québec City, QC, Canada, September 14, 2017, Proceedings. Lecture Notes in Computer Science 10554, Springer 2017, ISBN 978-3-319-67560-2 [contents] - [e1]M. Jorge Cardoso, Tal Arbel, Fei Gao, Bernhard Kainz, Theo van Walsum, Kuangyu Shi, Kanwal K. Bhatia, Roman Peter, Tom Vercauteren, Mauricio Reyes, Adrian V. Dalca, Roland Wiest, Wiro J. Niessen, Bart J. Emmer:
Molecular Imaging, Reconstruction and Analysis of Moving Body Organs, and Stroke Imaging and Treatment - Fifth International Workshop, CMMI 2017, Second International Workshop, RAMBO 2017, and First International Workshop, SWITCH 2017, Held in Conjunction with MICCAI 2017, Québec City, QC, Canada, September 14, 2017, Proceedings. Lecture Notes in Computer Science 10555, Springer 2017, ISBN 978-3-319-67563-3 [contents] - [i14]Lucas Fidon, Wenqi Li, Luis C. García-Peraza-Herrera, Jinendra Ekanayake, Neil Kitchen, Sébastien Ourselin, Tom Vercauteren:
Scalable multimodal convolutional networks for brain tumour segmentation. CoRR abs/1706.08124 (2017) - [i13]Luis C. García-Peraza-Herrera, Wenqi Li, Lucas Fidon, Caspar Gruijthuijsen, Alain Devreker, George Attilakos, Jan Deprest, Emmanuel B. Vander Poorten, Danail Stoyanov, Tom Vercauteren, Sébastien Ourselin:
ToolNet: Holistically-Nested Real-Time Segmentation of Robotic Surgical Tools. CoRR abs/1706.08126 (2017) - [i12]Lucas Fidon, Wenqi Li, Luis C. García-Peraza-Herrera, Jinendra Ekanayake, Neil Kitchen, Sébastien Ourselin, Tom Vercauteren:
Generalised Wasserstein Dice Score for Imbalanced Multi-class Segmentation using Holistic Convolutional Networks. CoRR abs/1707.00478 (2017) - [i11]Guotai Wang, Maria A. Zuluaga, Wenqi Li, Rosalind Pratt, Premal A. Patel, Michael Aertsen, Tom Doel, Anna L. David, Jan Deprest, Sébastien Ourselin, Tom Vercauteren:
DeepIGeoS: A Deep Interactive Geodesic Framework for Medical Image Segmentation. CoRR abs/1707.00652 (2017) - [i10]Wenqi Li, Guotai Wang, Lucas Fidon, Sébastien Ourselin, M. Jorge Cardoso, Tom Vercauteren:
On the Compactness, Efficiency, and Representation of 3D Convolutional Networks: Brain Parcellation as a Pretext Task. CoRR abs/1707.01992 (2017) - [i9]Carole H. Sudre, Wenqi Li, Tom Vercauteren, Sébastien Ourselin, M. Jorge Cardoso:
Generalised Dice overlap as a deep learning loss function for highly unbalanced segmentations. CoRR abs/1707.03237 (2017) - [i8]Yipeng Hu, Eli Gibson, Li-Lin Lee, Weidi Xie, Dean C. Barratt, Tom Vercauteren, J. Alison Noble:
Freehand Ultrasound Image Simulation with Spatially-Conditioned Generative Adversarial Networks. CoRR abs/1707.05392 (2017) - [i7]Guotai Wang, Wenqi Li, Sébastien Ourselin, Tom Vercauteren:
Automatic Brain Tumor Segmentation using Cascaded Anisotropic Convolutional Neural Networks. CoRR abs/1709.00382 (2017) - [i6]Yipeng Hu, Eli Gibson, Tom Vercauteren, Hashim Uddin Ahmed, Mark Emberton, Caroline M. Moore, J. Alison Noble, Dean C. Barratt:
Intraoperative Organ Motion Models with an Ensemble of Conditional Generative Adversarial Networks. CoRR abs/1709.02255 (2017) - [i5]Eli Gibson, Wenqi Li, Carole H. Sudre, Lucas Fidon, Dzhoshkun I. Shakir, Guotai Wang, Zach Eaton-Rosen, Robert J. Gray, Tom Doel, Yipeng Hu, Tom Whyntie, Parashkev Nachev, Dean C. Barratt, Sébastien Ourselin, M. Jorge Cardoso, Tom Vercauteren:
NiftyNet: a deep-learning platform for medical imaging. CoRR abs/1709.03485 (2017) - [i4]Guotai Wang, Wenqi Li, Maria A. Zuluaga, Rosalind Pratt, Premal A. Patel, Michael Aertsen, Tom Doel, Anna L. David, Jan Deprest, Sébastien Ourselin, Tom Vercauteren:
Interactive Medical Image Segmentation using Deep Learning with Image-specific Fine-tuning. CoRR abs/1710.04043 (2017) - [i3]Yipeng Hu, Marc Modat, Eli Gibson, Nooshin Ghavami, Ester Bonmati, Caroline M. Moore, Mark Emberton, J. Alison Noble, Dean C. Barratt, Tom Vercauteren:
Label-driven weakly-supervised learning for multimodal deformable image registration. CoRR abs/1711.01666 (2017) - [i2]Ester Bonmati, Yipeng Hu, Nikhil Sindhwani, Hans Peter Dietz, Jan D'hooge, Dean C. Barratt, Jan Deprest, Tom Vercauteren:
Automatic segmentation method of pelvic floor levator hiatus in ultrasound using a self-normalising neural network. CoRR abs/1712.06452 (2017) - 2016
- [j18]Sébastien Ourselin, Mark Emberton, Tom Vercauteren:
From computer-assisted intervention research to clinical impact: The need for a holistic approach. Medical Image Anal. 33: 72-78 (2016) - [j17]Guotai Wang, Maria A. Zuluaga, Rosalind Pratt, Michael Aertsen, Tom Doel, Maria Klusmann, Anna L. David, Jan Deprest, Tom Vercauteren, Sébastien Ourselin:
Slic-Seg: A minimally interactive segmentation of the placenta from sparse and motion-corrupted fetal MRI in multiple views. Medical Image Anal. 34: 137-147 (2016) - [c38]Sebastiano Ferraris, Marco Lorenzi, Pankaj Daga, Marc Modat, Tom Vercauteren:
Accurate Small Deformation Exponential Approximant to Integrate Large Velocity Fields: Application to Image Registration. CVPR Workshops 2016: 457-464 - [c37]Marcel Tella-Amo, Pankaj Daga, François Chadebecq, Stephen A. Thompson, Dzhoshkun I. Shakir, George Dwyer, Ruwan Wimalasundera, Jan Deprest, Danail Stoyanov, Tom Vercauteren, Sébastien Ourselin:
A Combined EM and Visual Tracking Probabilistic Model for Robust Mosaicking: Application to Fetoscopy. CVPR Workshops 2016: 524-532 - [c36]Michael Ebner, Manil Chouhan, Premal A. Patel, David Atkinson, Zahir Amin, Samantha Read, Shonit Punwani, Stuart Taylor, Tom Vercauteren, Sébastien Ourselin:
Point-Spread-Function-Aware Slice-to-Volume Registration: Application to Upper Abdominal MRI Super-Resolution. RAMBO+HVSMR@MICCAI 2016: 3-13 - [c35]Martin Kochan, Marc Modat, Tom Vercauteren, Mark White, Laura Mancini, Gavin P. Winston, Andrew W. McEvoy, John S. Thornton, Tarek A. Yousry, John S. Duncan, Sébastien Ourselin, Danail Stoyanov:
Bilateral Weighted Adaptive Local Similarity Measure for Registration in Neurosurgery. MICCAI (3) 2016: 81-88 - [c34]Luis C. García-Peraza-Herrera, Wenqi Li, Caspar Gruijthuijsen, Alain Devreker, George Attilakos, Jan Deprest, Emmanuel B. Vander Poorten, Danail Stoyanov, Tom Vercauteren, Sébastien Ourselin:
Real-Time Segmentation of Non-rigid Surgical Tools Based on Deep Learning and Tracking. CARE@MICCAI 2016: 84-95 - [c33]Maria A. Zuluaga, Benedetta Biffi, Andrew Mayall Taylor, Silvia Schievano, Tom Vercauteren, Sébastien Ourselin:
Strengths and Pitfalls of Whole-Heart Atlas-Based Segmentation in Congenital Heart Disease Patients. RAMBO+HVSMR@MICCAI 2016: 139-146 - [c32]Guotai Wang, Maria A. Zuluaga, Rosalind Pratt, Michael Aertsen, Tom Doel, Maria Klusmann, Anna L. David, Jan Deprest, Tom Vercauteren, Sébastien Ourselin:
Dynamically Balanced Online Random Forests for Interactive Scribble-Based Segmentation. MICCAI (2) 2016: 352-360 - [c31]Pankaj Daga, François Chadebecq, Dzhoshkun I. Shakir, Luis Carlos García-Peraza-Herrera, Marcel Tella, George Dwyer, Anna L. David, Jan Deprest, Danail Stoyanov, Tom Vercauteren, Sébastien Ourselin:
Real-time mosaicing of fetoscopic videos using SIFT. Image-Guided Procedures 2016: 97861R - 2015
- [c30]Alain Devreker, Benoit Rosa, Adrien E. Desjardins, Erwin J. Alles, Luis C. García-Peraza, Efthymios Maneas, Danail Stoyanov, Anna L. David, Tom Vercauteren, Jan Deprest, Sébastien Ourselin, Dominiek Reynaerts, Emmanuel B. Vander Poorten:
Fluidic actuation for intra-operative in situ imaging. IROS 2015: 1415-1421 - [c29]Guotai Wang, Maria A. Zuluaga, Rosalind Pratt, Michael Aertsen, Anna L. David, Jan Deprest, Tom Vercauteren, Sébastien Ourselin:
Slic-Seg: Slice-by-Slice Segmentation Propagation of the Placenta in Fetal MRI Using One-Plane Scribbles and Online Learning. MICCAI (3) 2015: 29-37 - [c28]Wenfeng Xia, Efthymios Maneas, Daniil I. Nikitichev, Charles A. Mosse, Gustavo Sato dos Santos, Tom Vercauteren, Anna L. David, Jan Deprest, Sébastien Ourselin, Paul C. Beard, Adrien E. Desjardins:
Interventional Photoacoustic Imaging of the Human Placenta with Ultrasonic Tracking for Minimally Invasive Fetal Surgeries. MICCAI (1) 2015: 371-378 - [c27]Jessie Mahé, Nicolas Linard, Marzieh Kohandani Tafreshi, Tom Vercauteren, Nicholas Ayache, François Lacombe, Rémi Cuingnet:
Motion-Aware Mosaicing for Confocal Laser Endomicroscopy. MICCAI (1) 2015: 447-454 - [c26]Gustavo Sato dos Santos, Efthymios Maneas, Daniil I. Nikitichev, Anamaria Barburas, Anna L. David, Jan Deprest, Adrien E. Desjardins, Tom Vercauteren, Sébastien Ourselin:
A Registration Approach to Endoscopic Laser Speckle Contrast Imaging for Intrauterine Visualisation of Placental Vessels. MICCAI (1) 2015: 455-462 - [c25]Manuel Jorge Cardoso, Marc Modat, Tom Vercauteren, Sébastien Ourselin:
Scale Factor Point Spread Function Matching: Beyond Aliasing in Image Resampling. MICCAI (2) 2015: 675-683 - 2014
- [c24]Marzieh Kohandani Tafreshi, Nicolas Linard, Barbara André, Nicholas Ayache, Tom Vercauteren:
Semi-automated Query Construction for Content-Based Endomicroscopy Video Retrieval. MICCAI (1) 2014: 89-96 - 2013
- [j16]Benoit Rosa, Mustafa Suphi Erden, Tom Vercauteren, Benoît Herman, Jérôme Szewczyk, Guillaume Morel:
Building Large Mosaics of Confocal Edomicroscopic Images Using Visual Servoing. IEEE Trans. Biomed. Eng. 60(4): 1041-1049 (2013) - [c23]Jessie Mahé, Tom Vercauteren, Benoit Rosa, Julien Dauguet:
A Viterbi Approach to Topology Inference for Large Scale Endomicroscopy Video Mosaicing. MICCAI (1) 2013: 404-411 - 2012
- [j15]Baptiste Allain, Mingxing Hu, Laurence B. Lovat, Richard J. Cook, Tom Vercauteren, Sébastien Ourselin, David J. Hawkes:
Re-localisation of a biopsy site in endoscopic images and characterisation of its uncertainty. Medical Image Anal. 16(2): 482-496 (2012) - [j14]Barbara André, Tom Vercauteren, Anna M. Buchner, Michael B. Wallace, Nicholas Ayache:
Learning Semantic and Visual Similarity for Endomicroscopy Video Retrieval. IEEE Trans. Medical Imaging 31(6): 1276-1288 (2012) - [c22]Benoit Rosa, Mustafa Suphi Erden, Tom Vercauteren, Jérôme Szewczyk, Guillaume Morel:
Scanning the surface of soft tissues with a micrometer precision thanks to endomicroscopy based visual servoing. IROS 2012: 4118-4124 - [c21]Nicolas Savoire, Barbara André, Tom Vercauteren:
Online Blind Calibration of Non-uniform Photodetectors: Application to Endomicroscopy. MICCAI (3) 2012: 639-646 - 2011
- [j13]Barbara André, Tom Vercauteren, Anna M. Buchner, Michael B. Wallace, Nicholas Ayache:
A smart atlas for endomicroscopy using automated video retrieval. Medical Image Anal. 15(4): 460-476 (2011) - [j12]Keelin Murphy, Bram van Ginneken, Joseph M. Reinhardt, Sven Kabus, Kai Ding, Xiang Deng, Kunlin Cao, Kaifang Du, Gary E. Christensen, Vincent Garcia, Tom Vercauteren, Nicholas Ayache, Olivier Commowick, Grégoire Malandain, Ben Glocker, Nikos Paragios, Nassir Navab, Vladlena Gorbunova, Jon Sporring, Marleen de Bruijne, Xiao Han, Mattias P. Heinrich, Julia A. Schnabel, Mark Jenkinson, Cristian Lorenz, Marc Modat, Jamie McClelland, Sébastien Ourselin, Sascha E. A. Muenzing, Max A. Viergever, Dante De Nigris, D. Louis Collins, Tal Arbel, Marta Peroni, Rui Li, Gregory C. Sharp, Alexander Schmidt-Richberg, Jan Ehrhardt, René Werner, Dirk Smeets, Dirk Loeckx, Gang Song, Nicholas J. Tustison, Brian B. Avants, James C. Gee, Marius Staring, Stefan Klein, Berend C. Stoel, Martin Urschler, Manuel Werlberger, Jef Vandemeulebroucke, Simon Rit, David Sarrut, Josien P. W. Pluim:
Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge. IEEE Trans. Medical Imaging 30(11): 1901-1920 (2011) - [c20]Barbara André, Tom Vercauteren, Nicholas Ayache:
Content-Based Retrieval in Endomicroscopy: Toward an Efficient Smart Atlas for Clinical Diagnosis. MCBR-CDS 2011: 12-23 - [c19]Barbara André, Tom Vercauteren, Anna M. Buchner, Michael B. Wallace, Nicholas Ayache:
Retrieval Evaluation and Distance Learning from Perceived Similarity between Endomicroscopy Videos. MICCAI (3) 2011: 297-304 - 2010
- [j11]B. T. Thomas Yeo, Mert R. Sabuncu, Tom Vercauteren, Nicholas Ayache, Bruce Fischl, Polina Golland:
Spherical Demons: Fast Diffeomorphic Landmark-Free Surface Registration. IEEE Trans. Medical Imaging 29(3): 650-668 (2010) - [j10]B. T. Thomas Yeo, Mert R. Sabuncu, Tom Vercauteren, Daphne J. Holt, Katrin Amunts, Karl Zilles, Polina Golland, Bruce Fischl:
Learning Task-Optimal Registration Cost Functions for Localizing Cytoarchitecture and Function in the Cerebral Cortex. IEEE Trans. Medical Imaging 29(7): 1424-1441 (2010) - [c18]Barbara André, Tom Vercauteren, Anna M. Buchner, Michael B. Wallace, Nicholas Ayache:
Endomicroscopic video retrieval using mosaicing and visual words. ISBI 2010: 1419-1422 - [c17]Barbara André, Tom Vercauteren, Anna M. Buchner, Muhammad Waseem Shahid, Michael B. Wallace, Nicholas Ayache:
An Image Retrieval Approach to Setup Difficulty Levels in Training Systems for Endomicroscopy Diagnosis. MICCAI (2) 2010: 480-487 - [c16]Baptiste Allain, Mingxing Hu, Laurence B. Lovat, Richard J. Cook, Tom Vercauteren, Sébastien Ourselin, David J. Hawkes:
A System for Biopsy Site Re-targeting with Uncertainty in Gastroenterology and Oropharyngeal Examinations. MICCAI (2) 2010: 514-521 - [c15]Marc Modat, Tom Vercauteren, Gerard R. Ridgway, David J. Hawkes, Nick C. Fox, Sébastien Ourselin:
Diffeomorphic demons using normalized mutual information, evaluation on multimodal brain MR images. Image Processing 2010: 76232K
2000 – 2009
- 2009
- [j9]Tom Vercauteren, Xavier Pennec, Aymeric Perchant, Nicholas Ayache:
Diffeomorphic demons: Efficient non-parametric image registration. NeuroImage 45(1): S61-S72 (2009) - [j8]Arno Klein, Jesper L. R. Andersson, Babak A. Ardekani, John Ashburner, Brian B. Avants, Ming-Chang Chiang, Gary E. Christensen, D. Louis Collins, James C. Gee, Pierre Hellier, Joo Hyun Song, Mark Jenkinson, Claude Lepage, Daniel Rueckert, Paul M. Thompson, Tom Vercauteren, Roger P. Woods, J. John Mann, Ramin V. Parsey:
Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration. NeuroImage 46(3): 786-802 (2009) - [j7]B. T. Thomas Yeo, Tom Vercauteren, Pierre Fillard, Jean-Marc Peyrat, Xavier Pennec, Polina Golland, Nicholas Ayache, Olivier Clatz:
DT-REFinD: Diffusion Tensor Registration With Exact Finite-Strain Differential. IEEE Trans. Medical Imaging 28(12): 1914-1928 (2009) - [c14]Barbara André, Tom Vercauteren, Aymeric Perchant, Anna M. Buchner, Michael B. Wallace, Nicholas Ayache:
Endomicroscopic Image Retrieval and Classification Using Invariant Visual Features. ISBI 2009: 346-349 - [c13]Barbara André, Tom Vercauteren, Aymeric Perchant, Anna M. Buchner, Michael B. Wallace, Nicholas Ayache:
Introducing Space and Time in Local Feature-Based Endomicroscopic Image Retrieval. MCBR-CDS 2009: 18-30 - [c12]Mert R. Sabuncu, B. T. Thomas Yeo, Koen Van Leemput, Tom Vercauteren, Polina Golland:
Asymmetric Image-Template Registration. MICCAI (1) 2009: 565-573 - 2008
- [b1]Tom Vercauteren:
Image registration and mosaicing for dynamic In vivo fibered confocal microscopy : Image Registration and Mosaicing for Dynamic In Vivo Fibered Confocal Microscopy. (Recalage et mosaïques d'images pour la microscopie confocale fibrée dynamique in vivo). Mines ParisTech, France, 2008 - [c11]B. T. Thomas Yeo, Tom Vercauteren, Pierre Fillard, Xavier Pennec, Polina Golland, Nicholas Ayache, Olivier Clatz:
DTI registration with exact finite-strain differential. ISBI 2008: 700-703 - [c10]B. T. Thomas Yeo, Mert R. Sabuncu, Tom Vercauteren, Nicholas Ayache, Bruce Fischl, Polina Golland:
Spherical Demons: Fast Surface Registration. MICCAI (1) 2008: 745-753 - [c9]Tom Vercauteren, Xavier Pennec, Aymeric Perchant, Nicholas Ayache:
Symmetric Log-Domain Diffeomorphic Registration: A Demons-Based Approach. MICCAI (1) 2008: 754-761 - 2007
- [j6]Tom Vercauteren, Alberto López Toledo, Xiaodong Wang:
Batch and Sequential Bayesian Estimators of the Number of Active Terminals in an IEEE 802.11 Network. IEEE Trans. Signal Process. 55(2): 437-450 (2007) - [j5]Tom Vercauteren, Pradeep Aggarwal, Xiaodong Wang, Ta-Hsin Li:
Hierarchical Forecasting of Web Server Workload Using Sequential Monte Carlo Training. IEEE Trans. Signal Process. 55(4): 1286-1297 (2007) - [c8]Tom Vercauteren, Xavier Pennec, Ezio Malis, Aymeric Perchant, Nicholas Ayache:
Insight into Efficient Image Registration Techniques and the Demons Algorithm. IPMI 2007: 495-506 - [c7]Aymeric Perchant, Tom Vercauteren, Fabien Oberrietter, Nicolas Savoire, Nicholas Ayache:
Region Tracking Algorithms on Laser Scanning Devices Applied to Cell Traffic Analysis. ISBI 2007: 260-263 - [c6]Tom Vercauteren, Xavier Pennec, Aymeric Perchant, Nicholas Ayache:
Non-parametric Diffeomorphic Image Registration with the Demons Algorithm. MICCAI (2) 2007: 319-326 - [i1]Tom Vercauteren, Aymeric Perchant, Nicholas Ayache:
In Vivo Microscopy for Real-Time Structural and Functional Cellular Imaging. ERCIM News 2007(69) (2007) - 2006
- [j4]Tom Vercauteren, Aymeric Perchant, Grégoire Malandain, Xavier Pennec, Nicholas Ayache:
Robust mosaicing with correction of motion distortions and tissue deformations for in vivo fibered microscopy. Medical Image Anal. 10(5): 673-692 (2006) - [j3]Alberto López Toledo, Tom Vercauteren, Xiaodong Wang:
Adaptive Optimization of IEEE 802.11 DCF Based on Bayesian Estimation of the Number of Competing Terminals. IEEE Trans. Mob. Comput. 5(9): 1283-1296 (2006) - [c5]Tom Vercauteren, Pradeep Aggarwal, Xiaodong Wang, Ta-Hsin Li:
Hierarchical Forecasting of Web Server Workload Using Sequential Monte Carlo Training. CISS 2006: 899-904 - 2005
- [j2]Tom Vercauteren, Dong Guo, Xiaodong Wang:
Joint multiple target tracking and classification in collaborative sensor networks. IEEE J. Sel. Areas Commun. 23(4): 714-723 (2005) - [j1]Tom Vercauteren, Xiaodong Wang:
Decentralized sigma-point information filters for target tracking in collaborative sensor networks. IEEE Trans. Signal Process. 53(8-2): 2997-3009 (2005) - [c4]Tom Vercauteren, Alberto López Toledo, Xiaodong Wang:
Online Bayesian estimation of hidden Markov models with unknown transition matrix and applications to IEEE 802.11 networks. ICASSP (4) 2005: 13-16 - [c3]Alberto López Toledo, Tom Vercauteren, Xiaodong Wang:
Optimizing IEEE 802.11 DCF using Bayesian estimators of the network state. ICASSP (5) 2005: 933-936 - [c2]Tom Vercauteren, Aymeric Perchant, Xavier Pennec, Nicholas Ayache:
Mosaicing of Confocal Microscopic In Vivo Soft Tissue Video Sequences. MICCAI 2005: 753-760 - 2004
- [c1]Tom Vercauteren, Dong Guo, Xiaodong Wang:
Joint multiple target tracking and classification in collaborative sensor networks. ISIT 2004: 552
Coauthor Index
aka: Dzhoshkun Ismail Shakir
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