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2020 – today
- 2024
[c11]Yuliang Huang, Björn Eiben, Kris Thielemans, Jamie R. McClelland:
Resolving Variable Respiratory Motion From Unsorted 4D Computed Tomography. MICCAI (1) 2024: 588-597- [i8]Evangelos Papoutsellis, Casper O. da Costa-Luis, Daniel Deidda, Claire Delplancke, Margaret Duff, Gemma Fardell, Ashley Gillman, Jakob S. Jørgensen, Zeljko Kereta, Evgueni Ovtchinnikov, Edoardo Pasca, Georg Schramm, Kris Thielemans:
Stochastic Optimisation Framework using the Core Imaging Library and Synergistic Image Reconstruction Framework for PET Reconstruction. CoRR abs/2406.15159 (2024) - [i7]Yuliang Huang, Björn Eiben, Kris Thielemans, Jamie R. McClelland:
Resolving Variable Respiratory Motion From Unsorted 4D Computed Tomography. CoRR abs/2407.00665 (2024) - 2023
- [j17]Markus Jehl, Ekaterina Mikhaylova, Valerie Treyer
, Marlena Hofbauer, Martin Hüllner, Philipp A. Kaufmann, Alfred Buck, Geoff Warnock, Viet Dao, Charalampos Tsoumpas, Daniel Deidda, Kris Thielemans, Max L. Ahnen, Jannis Fischer:
Attenuation Correction Using Template PET Registration for Brain PET: A Proof-of-Concept Study. J. Imaging 9(1): 2 (2023) - [j16]Robert Twyman, Simon R. Arridge, Zeljko Kereta, Bangti Jin, Ludovica Brusaferri, Sangtae Ahn, Charles W. Stearns, Brian F. Hutton, Irene A. Burger, Fotis Kotasidis, Kris Thielemans:
An Investigation of Stochastic Variance Reduction Algorithms for Relative Difference Penalized 3D PET Image Reconstruction. IEEE Trans. Medical Imaging 42(1): 29-41 (2023) - [c10]Yuliang Huang, Kris Thielemans, Jamie R. McClelland:
Surrogate-Driven Motion Model for Motion Compensated Cone-beam CT Reconstruction using Unsorted Projection Data. ISBI 2023: 1-5 - [d1]Aaron Oliver-Taylor, Adam Li, Adam G. Thomas, Adeen Flinker, Adina S. Wagner, Agah Karakuzu, Aki Nikolaidis, Alberto Lazari, Alejandro de la Vega, Alessio Giacomel, Alexander Rockhill, Alexander Jones, Alexander Li Cohen, Alexander von Lautz, Alexandre Gramfort, Alexandre Hutton, Alexandre Routier, Alexandru Foias, Ali Khan, Alizee Wickenheiser, Ana Fouto, Anders Eklund, Andrea Pigorini, Andrew Hoopes, Andrew Jahn, Andrew Janke, Anibal Sólon, Anthony Galassi, Ariel Rokem, Arjen Stolk, Arnaud Delorme, Arnaud Marcoux, Arshitha Basavaraj, Ashley G. Gillman, Athanasia M. Mowinckel, Aysegul Gunduz, Azeez Adebimpe, B. Nolan Nichols, Balint Kincses, Benjamin Beasley, Benjamin K. Dichter, Benjamin Gagl, Bertrand Thirion, Bradley Voytek, Brett L. Foster, Brian A. Wandell, Brian N. Lundstrom, Camille Maumet, Carlo Miniussi, Cecile Madjar, Chloé Pasturel, Chris Benjamin, Chris Gahnström, Chris Holdgraf, Chris Gorgolewski, Chris Rorden, Christian Büchel, Christian Horea, Christine Rogers, Christophe Phillips, Christopher J. Honey, Christopher J. Markiewicz, Christopher Lee-Messer, Clara Moreau, Clint Hansen, Cyril R. Pernet, Cyrus Eierud, D. Sturgeon, Dan Levitas, Dan Lurie, Daniel A. Handwerker, David C. Alsop, David A. Boas, David M. Groppe, David B. Keator, David McAlpine, David Thomas, Dejan Draschkow, Dianne K. Patterson, Dimitri Papadopoulos Orfanos, Dmitry Petrov, Dora Hermes, Dorien Huijser, Douglas N. Greve, Duncan Macleod, Dung Truong, Dylan Nielson, Eduard Ort, Eleonora Marcantoni, Elizabeth Bock, Elizabeth DuPre, Elke Warmerdam, Erdal Karaca, Eric A. Earl, Eric Achten, Eric Bridgeford, Erin W. Dickie, Ethan Blackwood, Eugene P. Duff, Ezequiel Mikulan, Felipe Orihuela-Espina, Fidel Alfaro-Almagro, Filip Szczepankiewicz, Filippo Maria Castelli, Franco Pestilli, Franklin W. Feingold, François Tadel, Gaia Rizzo, Gang Chen, Gaël Varoquaux, Ghislain Vaillant, Giacomo Bertazzoli, Giacomo Guidali, Giacomo Mazzamuto, Gilles de Hollander, Gio Piantoni, Gitte M. Knudsen, Giulio Castegnaro, Giuseppe Gallitto, Graham Searle, Granville J. Matheson, Gregory Kiar, Gregory Noack, Greydon Gilmore, Guillaume Flandin, Gunnar Schaefer, Gustav Nilsonne, Hamish Innes-Brown, Hanne D. Hansen, Hanzhang Lu, Hao-Ting Wang, Helena Cockx, Henk Mutsaerts, Hernando Ombao, Hugo Boniface, Ayse Ilkay Isik, Ilona Lipp, International Neuroinformatics Coordinating Facility, Iris I. A. Groen, Isla Staden, Jaap von der Aar, Jakub Kaczmarzyk, James Gholam, James Kent, Jan-Mathijs Schoffelen, Jan Petr, Jean-Baptiste Poline, Jean-Christophe Houde, Jean-Dominique Gallezot, Jean-Philippe Lachaux, Jeanette Mumford, Jefferson Casimir, Jeffrey G. Ojemann, Jeffrey S. Grethe, JegouA, Jelle R. Dalenberg, Jeremy T. Moreau, Jessica A. Turner, Jochem W. Rieger, John A. Detre, John Pellman, John T. Wodder, Joke Durnez, Jon Haitz Legarreta Gorrono, Jonathan C. Lau, Jonathan Winawer, Joost P. A. Kuijer, Jose Manuel Saborit, Joseph Wexler, Joseph G. Woods, J. Guiomar Niso, Julia Sprenger, Julien Cohen-Adad, Julius Welzel, Kai J. Miller, Kangjoo Lee, Katja Heuer, Kay Robbins, Kevin Larcher, Kimberly L. Ray, Kirstie J. Whitaker, Klara Gregorova, Klaus Gramann, Kris Thielemans, Kristofer E. Bouchard, Kurt Schilling, Laetitia Fesselier, Laura & John Arnold Foundation, Leandro Beltrachini, Lee Kamentsky, Lennart Walger, Lennart Wittkuhn, Liberty S. Hamilton, Luca Pollonini, Luis Hernandez-Garcia, Luke J. Edwards, Lyuba Zehl, Mainak Jas, Manjari Narayan, Manuel R. Mercier, Maqsood Yaqub, Marc Lalancette, Marco Castellaro, Maria de la Iglesia, Marie-Hélène Bourget, Mark Mikkelsen, Markus Morawski, Marta Bortoletto, Martin Craig, Martin Nørgaard, Martin Szinte, Martin Wilson, Martina Bulgari, Mateusz Pawlik, Mathias Goncalves, Mathieu Boudreau, Matt Sanderson, Matteo Tonietto, Matthias Günther, Matthias Van Osch, Maureen J. Shader, Maurice Pasternak, Max A. van den Boom, Melanie Ganz-Benjaminsen, Michael Chappell, Michael Hanke, Michael P. Harms, Michael P. Milham, Michael P. Notter, Michael Schirner, Mikaël Naveau, Nader Pouratian, Natalia Petridou, National Institute of Mental Health, Nell Hardcastle, Nicholas Traut, Nick F. Ramsey, Nicole C. Swann, Nima Bigdely Shamlo, Olivier David, Orrin Devinsky, Oscar Esteban, Pamela LaMontagne, Parul Sethi, Patricia Clement, Patrick Park, Paule-Joanne Toussaint, Peer Herholz, Petra Ritter, Pierre Rioux, Pieter Vandemaele, Pradeep Reddy Raamana, R. Cameron Craddock, Rémi Gau, Richard Höchenberger, Richard N. Henson, Robert B. Innis, Robert E. Smith, Robert Knight, Robert Luke, Robert Oostenveld, Roberto Toro, Rohan Goyal, Ross W. Blair, Russell A. Poldrack, Rémi Adon, Samir Das, Samuel Garcia, Samuel A. Nastase, Sara Elgayar, Sasha D'Ambrosio, Satrajit S. Ghosh, Scott Makeig, Sein Jeung, Shashank Bansal, Sjoerd B. Vos, Soichi Hayashi, Stefan Appelhoff, Stephan Bickel, Steven L. Meisler, Suyash Bhogawar, Sylvain Baillet, Sylvain Takerkart, Sébastien Tourbier, Sören Grothkopp, Tal Pal Attia, Tal Yarkoni, Tamas Spisak, Tamás Józsa, Taylor Salo, Teon L. Brooks, Thomas E. Nichols, Thomas Funck, Thomas Kirk, Thomas W. Okell, Tibor Auer, Timo Dickscheid, Timotheus Berg, Tobey Betthauser, Tobias Bengfort, Tom Hampshire, Tor Wager, Travis Riddle, Tristan Glatard, Tyler Collins, Ulrike Bingel, Vanessa V. Sochat, Vasudev Raguram, Vince D. Calhoun, Vittorio Iacovella, Vladimir Litvak, Wietske van der Zwaag, William Clarke, William Triplett, Wouter V. Potters, Xiangrui Li, Yaroslav O. Halchenko, Yoni Ashar, Yuan Wang, Zachary Michael, ezemikulan, josator2, monkeyman192, Étienne Bergeron:
bids-specification. Zenodo, 2023
- [i6]Imraj RD Singh, Alexander Denker, Riccardo Barbano, Zeljko Kereta, Bangti Jin, Kris Thielemans, Peter Maass, Simon R. Arridge:
Score-Based Generative Models for PET Image Reconstruction. CoRR abs/2308.14190 (2023) - 2022
- [j15]Viet Dao, Ekaterina Mikhaylova, Max L. Ahnen, Jannis Fischer, Kris Thielemans, Charalampos Tsoumpas:
Evaluation of STIR Library Adapted for PET Scanners with Non-Cylindrical Geometry. J. Imaging 8(6): 172 (2022) - 2021
- [j14]Kerstin Kläser, Thomas Varsavsky, Pawel Markiewicz, Tom Vercauteren, Alexander Hammers, David Atkinson, Kris Thielemans, Brian F. Hutton, Manuel Jorge Cardoso, Sébastien Ourselin:
Imitation learning for improved 3D PET/MR attenuation correction. Medical Image Anal. 71: 102079 (2021) - [j13]Pawel J. Markiewicz, Julian C. Matthews, John Ashburner, David M. Cash, David L. Thomas, Enrico De Vita, Anna Barnes, M. Jorge Cardoso, Marc Modat, Richard Brown, Kris Thielemans, Casper O. da Costa-Luis, Isadora Lopes Alves, Juan Domingo Gispert, Mark E. Schmidt, Paul Marsden, Alexander Hammers, Sébastien Ourselin, Frederik Barkhof:
Uncertainty analysis of MR-PET image registration for precision neuro-PET imaging. NeuroImage 232: 117821 (2021) - [j12]Marian Galovic, Kjell Erlandsson, Tim D. Fryer, Young T. Hong, Roido Manavaki, Hasan Sari, Sarah Chetcuti, Benjamin A. Thomas, Martin Fisher, Selena Sephton, Roberto Canales, Joseph J. Russell, Kerstin Sander, Erik Årstad, Franklin I. Aigbirhio, Ashley M. Groves, John S. Duncan, Kris Thielemans, Brian F. Hutton, Jonathan P. Coles, Matthias J. Koepp:
Validation of a combined image derived input function and venous sampling approach for the quantification of [18F]GE-179 PET binding in the brain. NeuroImage 237: 118194 (2021) - [i5]Jakob Sauer Jørgensen, Evelina Ametova, Genoveva Burca, Gemma Fardell, Evangelos Papoutsellis, Edoardo Pasca, Kris Thielemans, Martin J. Turner, Ryan Warr, William R. B. Lionheart, Philip J. Withers:
Core Imaging Library - Part I: a versatile Python framework for tomographic imaging. CoRR abs/2102.04560 (2021) - [i4]Zeljko Kereta, Robert Twyman, Simon R. Arridge, Kris Thielemans, Bangti Jin:
Stochastic EM methods with Variance Reduction for Penalised PET Reconstructions. CoRR abs/2106.03172 (2021) - [i3]Arkadiusz Sitek, Sangtae Ahn, Evren Asma, Adam Chandler, Alvin Ihsani, Sven Prevrhal, Arman Rahmim, Babak Saboury, Kris Thielemans:
Artificial Intelligence in PET: an Industry Perspective. CoRR abs/2107.06747 (2021) - 2020
- [j11]Evgueni Ovtchinnikov, Richard Brown, Christoph Kolbitsch, Edoardo Pasca, Casper O. da Costa-Luis, Ashley Gillman, Benjamin A. Thomas, Nikos Efthimiou, Johannes Mayer, Palak Wadhwa, Matthias J. Ehrhardt, Sam Ellis, Jakob Sauer Jørgensen, Julian C. Matthews, Claudia Prieto, Andrew J. Reader, Charalampos Tsoumpas, Martin J. Turner, Kris Thielemans:
SIRF: Synergistic Image Reconstruction Framework. Comput. Phys. Commun. 249: 107087 (2020) - [j10]Yu-Jung Tsai, Georg Schramm, Sangtae Ahn, Alexandre Bousse, Simon R. Arridge, Johan Nuyts, Brian F. Hutton, Charles W. Stearns, Kris Thielemans:
Benefits of Using a Spatially-Variant Penalty Strength With Anatomical Priors in PET Reconstruction. IEEE Trans. Medical Imaging 39(1): 11-22 (2020) - [j9]Alexandre Bousse, Matias Courdurier, Élise Émond, Kris Thielemans, Brian F. Hutton, Pablo Irarrazaval, Dimitris Visvikis:
PET Reconstruction With Non-Negativity Constraint in Projection Space: Optimization Through Hypo-Convergence. IEEE Trans. Medical Imaging 39(1): 75-86 (2020) - [c9]Kerstin Kläser, Pedro Borges, Richard Shaw, Marta Ranzini, Marc Modat, David Atkinson, Kris Thielemans, Brian F. Hutton, Vicky Goh, Gary J. Cook, M. Jorge Cardoso, Sébastien Ourselin:
Uncertainty-Aware Multi-resolution Whole-Body MR to CT Synthesis. SASHIMI@MICCAI 2020: 110-119
2010 – 2019
- 2019
- [c8]Kerstin Kläser, Thomas Varsavsky, Pawel Markiewicz, Tom Vercauteren, David Atkinson, Kris Thielemans, Brian F. Hutton, M. Jorge Cardoso, Sébastien Ourselin:
Improved MR to CT Synthesis for PET/MR Attenuation Correction Using Imitation Learning. SASHIMI@MICCAI 2019: 13-21 - [i2]Kerstin Kläser, Thomas Varsavsky, Pawel Markiewicz, Tom Vercauteren, David Atkinson, Kris Thielemans, Brian F. Hutton, M. Jorge Cardoso, Sébastien Ourselin:
Improved MR to CT synthesis for PET/MR attenuation correction using Imitation Learning. CoRR abs/1908.08431 (2019) - 2018
- [j8]Yu-Jung Tsai, Alexandre Bousse, Matthias J. Ehrhardt, Charles W. Stearns, Sangtae Ahn, Brian F. Hutton, Simon R. Arridge, Kris Thielemans:
Fast Quasi-Newton Algorithms for Penalized Reconstruction in Emission Tomography and Further Improvements via Preconditioning. IEEE Trans. Medical Imaging 37(4): 1000-1010 (2018) - [c7]Kerstin Kläser, Pawel Markiewicz, Marta Bianca Maria Ranzini, Wenqi Li, Marc Modat, Brian F. Hutton, David Atkinson, Kris Thielemans, M. Jorge Cardoso, Sébastien Ourselin:
Deep Boosted Regression for MR to CT Synthesis. SASHIMI@MICCAI 2018: 61-70 - [i1]Kerstin Kläser, Pawel Markiewicz, Marta Bianca Maria Ranzini, Wenqi Li, Marc Modat, Brian F. Hutton, David Atkinson, Kris Thielemans, M. Jorge Cardoso, Sébastien Ourselin:
Deep Boosted Regression for MR to CT Synthesis. CoRR abs/1808.07431 (2018) - 2017
- [j7]Jieqing Jiao, Alexandre Bousse, Kris Thielemans, Ninon Burgos, Philip S. J. Weston, Jonathan M. Schott, David Atkinson, Simon R. Arridge, Brian F. Hutton, Pawel Markiewicz, Sébastien Ourselin:
Direct Parametric Reconstruction With Joint Motion Estimation/Correction for Dynamic Brain PET Data. IEEE Trans. Medical Imaging 36(1): 203-213 (2017) - 2016
- [j6]Alexandre Bousse, Ottavia Bertolli, David Atkinson, Simon R. Arridge, Sébastien Ourselin, Brian F. Hutton, Kris Thielemans:
Maximum-Likelihood Joint Image Reconstruction/Motion Estimation in Attenuation-Corrected Respiratory Gated PET/CT Using a Single Attenuation Map. IEEE Trans. Medical Imaging 35(1): 217-228 (2016) - [j5]Matthias J. Ehrhardt, Pawel Markiewicz, Maria Liljeroth, Anna Barnes, Ville Kolehmainen, John S. Duncan, Luis Pizarro, David Atkinson, Brian F. Hutton, Sébastien Ourselin, Kris Thielemans, Simon R. Arridge:
PET Reconstruction With an Anatomical MRI Prior Using Parallel Level Sets. IEEE Trans. Medical Imaging 35(9): 2189-2199 (2016) - 2015
- [c6]Richard Manber, David Atkinson, Kris Thielemans, Brian F. Hutton, Anna Barnes, Celia O'Meara, Simon Wan, Sébastien Ourselin, Simon R. Arridge:
Practical PET respiratory motion correction in clinical simultaneous PET/MR. ISBI 2015: 1580-1583 - 2014
- [j4]Berta Martí Fuster, Oscar Esteban, Kris Thielemans, Xavier Setoain, Andrés Santos, Domènec Ros, Javier Pavía:
Including Anatomical and Functional Information in MC Simulation of PET and SPECT Brain Studies. Brain-VISET: A Voxel-Based Iterative Method. IEEE Trans. Medical Imaging 33(10): 1931-1938 (2014) - [j3]Ninon Burgos, Manuel Jorge Cardoso, Kris Thielemans, Marc Modat, Stefano Pedemonte, John C. Dickson, Anna Barnes, Rebekah Ahmed, Colin J. Mahoney, Jonathan M. Schott, John S. Duncan, David Atkinson, Simon R. Arridge, Brian F. Hutton, Sébastien Ourselin:
Attenuation Correction Synthesis for Hybrid PET-MR Scanners: Application to Brain Studies. IEEE Trans. Medical Imaging 33(12): 2332-2341 (2014) - [c5]Jieqing Jiao, Alexandre Bousse, Kris Thielemans, Pawel Markiewicz, Ninon Burgos, David Atkinson, Simon R. Arridge, Brian F. Hutton, Sébastien Ourselin:
Joint Parametric Reconstruction and Motion Correction Framework for Dynamic PET Data. MICCAI (1) 2014: 114-121 - 2012
- [c4]Evren Asma, Sangtae Ahn, Hua Qian, Girishankar Gopalakrishnan, Kris Thielemans, Steven G. Ross, Ravindra M. Manjeshwar, Alexander Ganin:
Quantitatively accurate image reconstruction for clinical whole-body PET imaging. APSIPA 2012: 1-9 - 2011
- [j2]Georgios I. Angelis, Kris Thielemans, Andri C. Tziortzi, Federico E. Turkheimer, Charalampos Tsoumpas:
Convergence optimization of parametric MLEM reconstruction for estimation of Patlak plot parameters. Comput. Medical Imaging Graph. 35(5): 407-416 (2011)
2000 – 2009
- 2009
- [c3]Vijaya Saradhi Gannavaram, Girish Gopalakrishnan, Arunabha Roy, Rakesh Mullick, Ravi Manjeshwar, Kris Thielemans, Uday Patil:
A Framework for Automated Tumor Detection in Thoracic FDG PET Images Using Texture-Based Features. ISBI 2009: 97-100 - 2006
- [c2]Ravindra M. Manjeshwar, Xiaodong Tao, Evren Asma, Kris Thielemans:
Motion compensated image reconstruction of respiratory gated PET/CT. ISBI 2006: 674-677 - 2004
- [j1]Sanida Mustafovic, Kris Thielemans:
Object dependency of resolution in reconstruction algorithms with interiteration filtering applied to PET data. IEEE Trans. Medical Imaging 23(4): 433-446 (2004)
1990 – 1999
- 1999
- [c1]Claire Labbé, Kris Thielemans, D. Belluzzo, Valentino Bettinardi, Maria Carla Gilardi, D. S. Hague, Matthew W. Jacobson, S. Kaiser, Roni Levkovitz, T. Margalit, Gautam Mitra, Christian Morel, Terry J. Spinks, Patrick Valente, Habib Zaidi, Alexey Zverovich:
An Object-Oriented Library for 3D PET Reconstruction Using Parallel Computing. Bildverarbeitung für die Medizin 1999: 268-272
Coauthor Index
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