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ORCIDVanessa V. Sochat
Person information
- affiliation: Lawrence Livermore National Lab, CA, USA
- affiliation (former): Stanford University, CA, USA
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2020 – today
- 2024
[j18]Vanessa V. Sochat
, Daniel Milroy, Claudia Misale, Jakob Lüttgau, Evan F. Bollig, William Magro:
Converged Computing: A Best of Both Worlds of High-Performance Computing and Cloud. Comput. Sci. Eng. 26(3): 4-7 (2024)- [c5]Md Rajib Hossen, Vanessa V. Sochat, Abhik Sarkar, Mohammad A. Islam, Daniel J. Milroy:
Enabling Workload-Driven Elasticity in MPI-based Ensembles. CLUSTER 2024: 250-262 - [i8]Vanessa V. Sochat:
Infrastructure Engineering: A Still Missing, Undervalued Role in the Research Ecosystem. CoRR abs/2405.10473 (2024) - [i7]Vanessa V. Sochat, David Fox, Daniel Milroy:
HPC Alongside User-space Kubernetes. CoRR abs/2406.06995 (2024) - 2023
- [d1]Aaron Oliver-Taylor, Adam Li, Adam G. Thomas, Adeen Flinker, Adina S. Wagner, Agah Karakuzu, Aki Nikolaidis, Alberto Lazari, Alejandro de la Vega, Alessio Giacomel, Alexander Rockhill, Alexander Jones, Alexander Li Cohen, Alexander von Lautz, Alexandre Gramfort, Alexandre Hutton, Alexandre Routier, Alexandru Foias, Ali Khan, Alizee Wickenheiser, Ana Fouto, Anders Eklund, Andrea Pigorini, Andrew Hoopes, Andrew Jahn, Andrew Janke, Anibal Sólon, Anthony Galassi, Ariel Rokem, Arjen Stolk, Arnaud Delorme, Arnaud Marcoux, Arshitha Basavaraj, Ashley G. Gillman, Athanasia M. Mowinckel, Aysegul Gunduz, Azeez Adebimpe, B. Nolan Nichols, Balint Kincses, Benjamin Beasley, Benjamin K. Dichter, Benjamin Gagl, Bertrand Thirion, Bradley Voytek, Brett L. Foster, Brian A. Wandell, Brian N. Lundstrom, Camille Maumet, Carlo Miniussi, Cecile Madjar, Chloé Pasturel, Chris Benjamin, Chris Gahnström, Chris Holdgraf, Chris Gorgolewski, Chris Rorden, Christian Büchel, Christian Horea, Christine Rogers, Christophe Phillips, Christopher J. Honey, Christopher J. Markiewicz, Christopher Lee-Messer, Clara Moreau, Clint Hansen, Cyril R. Pernet, Cyrus Eierud, D. Sturgeon, Dan Levitas, Dan Lurie, Daniel A. Handwerker, David C. Alsop, David A. Boas, David M. Groppe, David B. Keator, David McAlpine, David Thomas, Dejan Draschkow, Dianne K. Patterson, Dimitri Papadopoulos Orfanos, Dmitry Petrov, Dora Hermes, Dorien Huijser, Douglas N. Greve, Duncan Macleod, Dung Truong, Dylan Nielson, Eduard Ort, Eleonora Marcantoni, Elizabeth Bock, Elizabeth DuPre, Elke Warmerdam, Erdal Karaca, Eric A. Earl, Eric Achten, Eric Bridgeford, Erin W. Dickie, Ethan Blackwood, Eugene P. Duff, Ezequiel Mikulan, Felipe Orihuela-Espina, Fidel Alfaro-Almagro, Filip Szczepankiewicz, Filippo Maria Castelli, Franco Pestilli, Franklin W. Feingold, François Tadel, Gaia Rizzo, Gang Chen, Gaël Varoquaux, Ghislain Vaillant, Giacomo Bertazzoli, Giacomo Guidali, Giacomo Mazzamuto, Gilles de Hollander, Gio Piantoni, Gitte M. Knudsen, Giulio Castegnaro, Giuseppe Gallitto, Graham Searle, Granville J. Matheson, Gregory Kiar, Gregory Noack, Greydon Gilmore, Guillaume Flandin, Gunnar Schaefer, Gustav Nilsonne, Hamish Innes-Brown, Hanne D. Hansen, Hanzhang Lu, Hao-Ting Wang, Helena Cockx, Henk Mutsaerts, Hernando Ombao, Hugo Boniface, Ayse Ilkay Isik, Ilona Lipp, International Neuroinformatics Coordinating Facility, Iris I. A. Groen, Isla Staden, Jaap von der Aar, Jakub Kaczmarzyk, James Gholam, James Kent, Jan-Mathijs Schoffelen, Jan Petr, Jean-Baptiste Poline, Jean-Christophe Houde, Jean-Dominique Gallezot, Jean-Philippe Lachaux, Jeanette Mumford, Jefferson Casimir, Jeffrey G. Ojemann, Jeffrey S. Grethe, JegouA, Jelle R. Dalenberg, Jeremy T. Moreau, Jessica A. Turner, Jochem W. Rieger, John A. Detre, John Pellman, John T. Wodder, Joke Durnez, Jon Haitz Legarreta Gorrono, Jonathan C. Lau, Jonathan Winawer, Joost P. A. Kuijer, Jose Manuel Saborit, Joseph Wexler, Joseph G. Woods, J. Guiomar Niso, Julia Sprenger, Julien Cohen-Adad, Julius Welzel, Kai J. Miller, Kangjoo Lee, Katja Heuer, Kay Robbins, Kevin Larcher, Kimberly L. Ray, Kirstie J. Whitaker, Klara Gregorova, Klaus Gramann, Kris Thielemans, Kristofer E. Bouchard, Kurt Schilling, Laetitia Fesselier, Laura & John Arnold Foundation, Leandro Beltrachini, Lee Kamentsky, Lennart Walger, Lennart Wittkuhn, Liberty S. Hamilton, Luca Pollonini, Luis Hernandez-Garcia, Luke J. Edwards, Lyuba Zehl, Mainak Jas, Manjari Narayan, Manuel R. Mercier, Maqsood Yaqub, Marc Lalancette, Marco Castellaro, Maria de la Iglesia, Marie-Hélène Bourget, Mark Mikkelsen, Markus Morawski, Marta Bortoletto, Martin Craig, Martin Nørgaard, Martin Szinte, Martin Wilson, Martina Bulgari, Mateusz Pawlik, Mathias Goncalves, Mathieu Boudreau, Matt Sanderson, Matteo Tonietto, Matthias Günther, Matthias Van Osch, Maureen J. Shader, Maurice Pasternak, Max A. van den Boom, Melanie Ganz-Benjaminsen, Michael Chappell, Michael Hanke, Michael P. Harms, Michael P. Milham, Michael P. Notter, Michael Schirner, Mikaël Naveau, Nader Pouratian, Natalia Petridou, National Institute of Mental Health, Nell Hardcastle, Nicholas Traut, Nick F. Ramsey, Nicole C. Swann, Nima Bigdely Shamlo, Olivier David, Orrin Devinsky, Oscar Esteban, Pamela LaMontagne, Parul Sethi, Patricia Clement, Patrick Park, Paule-Joanne Toussaint, Peer Herholz, Petra Ritter, Pierre Rioux, Pieter Vandemaele, Pradeep Reddy Raamana, R. Cameron Craddock, Rémi Gau, Richard Höchenberger, Richard N. Henson, Robert B. Innis, Robert E. Smith, Robert Knight, Robert Luke, Robert Oostenveld, Roberto Toro, Rohan Goyal, Ross W. Blair, Russell A. Poldrack, Rémi Adon, Samir Das, Samuel Garcia, Samuel A. Nastase, Sara Elgayar, Sasha D'Ambrosio, Satrajit S. Ghosh, Scott Makeig, Sein Jeung, Shashank Bansal, Sjoerd B. Vos, Soichi Hayashi, Stefan Appelhoff, Stephan Bickel, Steven L. Meisler, Suyash Bhogawar, Sylvain Baillet, Sylvain Takerkart, Sébastien Tourbier, Sören Grothkopp, Tal Pal Attia, Tal Yarkoni, Tamás Spisák, Tamás Józsa, Taylor Salo, Teon L. Brooks, Thomas E. Nichols, Thomas Funck, Thomas Kirk, Thomas W. Okell, Tibor Auer, Timo Dickscheid, Timotheus Berg, Tobey Betthauser, Tobias Bengfort, Tom Hampshire, Tor Wager, Travis Riddle, Tristan Glatard, Tyler Collins, Ulrike Bingel, Vanessa V. Sochat, Vasudev Raguram, Vince D. Calhoun, Vittorio Iacovella, Vladimir Litvak, Wietske van der Zwaag, William Clarke, William Triplett, Wouter V. Potters, Xiangrui Li, Yaroslav O. Halchenko, Yoni Ashar, Yuan Wang, Zachary Michael, ezemikulan, josator2, monkeyman192, Étienne Bergeron:
bids-specification. Zenodo, 2023
- [i6]Vanessa V. Sochat, Aldo Culquicondor, Antonio Ojea, Daniel Milroy:
The Flux Operator. CoRR abs/2309.17420 (2023) - 2022
- [j17]Miranda Mundt, Keith Beattie, Jonathan Bisila, Charles R. Ferenbaugh, William F. Godoy, Rinku Gupta, Jonathan E. Guyer, Miriam Kiran, Addi Malviya-Thakur, Reed Milewicz, Benjamin H. Sims, Vanessa V. Sochat, Joshua B. Teves:
For the Public Good: Connecting, Retaining, and Recognizing Current and Future RSEs at U.S. National Research Laboratories and Agencies. Comput. Sci. Eng. 24(6): 6-13 (2022) - [j16]Vanessa V. Sochat:
CiteLang: Modeling the Research Software Ecosystem. J. Open Source Softw. 7(77): 4458 (2022) - [i5]Vanessa V. Sochat, Tim Haines:
Software Compatibility Tool Agreement. CoRR abs/2212.03364 (2022) - [i4]Vanessa V. Sochat, Matthieu Muffato, Audrey Stott, Marco De La Pierre, Georgia Stuart:
Automated Cache for Container Executables. CoRR abs/2212.07376 (2022) - 2021
- [j15]Vanessa V. Sochat:
The 10 best practices for remote software engineering. Commun. ACM 64(5): 32-36 (2021) - [j14]Yaroslav O. Halchenko, Kyle Meyer, Benjamin Poldrack, Debanjum Singh Solanky, Adina S. Wagner, Jason Gors, Dave MacFarlane, Dorian Pustina, Vanessa V. Sochat, Satrajit S. Ghosh, Christian Mönch, Christopher J. Markiewicz, Laura K. Waite, Ilya Shlyakhter, Alejandro de la Vega, Soichi Hayashi, Christian Olaf Häusler, Jean-Baptiste Poline, Tobias Kadelka, Kusti Skytén, Dorota Jarecka, David N. Kennedy, Ted J. Strauss, Matt Cieslak, Peter Vavra, Horea-Ioan Ioanas, Robin Schneider, Mika Pflüger, James V. Haxby, Simon B. Eickhoff, Michael Hanke:
DataLad: distributed system for joint management of code, data, and their relationship. J. Open Source Softw. 6(63): 3262 (2021) - [j13]Vanessa V. Sochat, Alec Scott:
Collaborative Container Modules with Singularity Registry HPC. J. Open Source Softw. 6(63): 3311 (2021) - [i3]Daniel S. Katz, Morane Gruenpeter, Tom Honeyman, Lorraine J. Hwang, Mark D. Wilkinson, Vanessa V. Sochat, Hartwig Anzt, Carole A. Goble:
A Fresh Look at FAIR for Research Software. CoRR abs/2101.10883 (2021) - [i2]Felix Mölder, Kim Philipp Jablonski, Brice Letcher, Michael B. Hall, Christopher Tomkins-Tinch, Vanessa V. Sochat, Jan Forster, Soohyun Lee, Sven Twardziok, Alexander Kanitz, Andreas Wilm, Manuel Holtgrewe, Sven Rahmann, Sven Nahnsen, Johannes Köster:
Sustainable data analysis with Snakemake. F1000Research 10: 33 (2021) - 2020
- [j12]Vanessa V. Sochat:
GridTest: testing and metrics collection for Python. J. Open Source Softw. 5(51): 2284 (2020) - [j11]Daniel Nüst, Vanessa V. Sochat, Ben Marwick, Stephen J. Eglen, Tim Head, Tony Hirst, Benjamin D. Evans:
Ten simple rules for writing Dockerfiles for reproducible data science. PLoS Comput. Biol. 16(11) (2020) - [c4]Vanessa V. Sochat:
AskCI Server: Collaborative knowledge base. PEARC 2020: 514-517 - [i1]Vanessa V. Sochat:
AskCI Server: Collaborative and version controlled knowledge base. CoRR abs/2003.05973 (2020)
2010 – 2019
- 2019
- [j10]Vanessa V. Sochat:
WatchMe: Software for Reproducible Monitoring and Data Collection. J. Open Source Softw. 4(37): 1388 (2019) - [j9]Vanessa V. Sochat:
Container Tree: Software to Model Container Filesystems, Packages, and Inheritance. J. Open Source Softw. 4(37): 1418 (2019) - [j8]Vanessa V. Sochat:
Singularity Compose: Orchestration for Singularity Instances. J. Open Source Softw. 4(40): 1578 (2019) - 2018
- [j7]Vanessa V. Sochat:
The Experiment Factory: Reproducible Experiment Containers. J. Open Source Softw. 3(22): 521 (2018) - [j6]Vanessa V. Sochat:
HelpMe Command Line Helper Utility. J. Open Source Softw. 3(26): 775 (2018) - [j5]Vanessa V. Sochat:
Containershare: Open Source Registry to build, test, deploy with CircleCI. J. Open Source Softw. 3(28): 878 (2018) - [c3]Victoria Stodden, Xiaomian Wu, Vanessa V. Sochat:
AIM: An Abstraction for Improving Machine Learning Prediction. DSW 2018: 150-154 - 2017
- [j4]Vanessa V. Sochat:
Singularity Registry: Open Source Registry for Singularity Images. J. Open Source Softw. 2(18): 426 (2017) - 2016
- [j3]Krzysztof J. Gorgolewski, Gaël Varoquaux, Gabriel Rivera, Yannick Schwartz, Vanessa V. Sochat, Satrajit S. Ghosh, Camille Maumet, Thomas E. Nichols, Jean-Baptiste Poline, Tal Yarkoni, Daniel S. Margulies, Russell A. Poldrack:
NeuroVault.org: A repository for sharing unthresholded statistical maps, parcellations, and atlases of the human brain. NeuroImage 124: 1242-1244 (2016) - 2015
- [j2]Vanessa V. Sochat:
AuthorSynth: a collaboration network and behaviorally-based visualization tool of activation reports from the neuroscience literature. Frontiers Neuroinformatics 9: 6 (2015) - [j1]Krzysztof J. Gorgolewski, Gaël Varoquaux, Gabriel Rivera, Yannick Schwartz, Satrajit S. Ghosh, Camille Maumet, Vanessa V. Sochat, Thomas E. Nichols, Russell A. Poldrack, Jean-Baptiste Poline, Tal Yarkoni, Daniel S. Margulies:
NeuroVault.org: a web-based repository for collecting and sharing unthresholded statistical maps of the human brain. Frontiers Neuroinformatics 9: 8 (2015) - [c2]Vanessa V. Sochat, Maude David, Dennis P. Wall:
Translational Meta-analytical Methods to Localize the Regulatory Patterns of Neurological Disorders in the Human Brain. AMIA 2015 - 2013
- [c1]Sam Finlayson, Vanessa V. Sochat, Linda Szabo, Luke Yancy Jr.:
A Rapid Learning System for Personalized Glioblastoma Treatment Planning. AMIA 2013
Coauthor Index
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