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2020 – today
- 2022
[j12]Vinzenz May, Leonard Koch
, Björn Fischer-Zirnsak, Denise Horn, Petra Gehle, Uwe Kornak, Dieter Beule, Manuel Holtgrewe:
ClearCNV: CNV calling from NGS panel data in the presence of ambiguity and noise. Bioinform. 38(16): 3871-3876 (2022)- 2021
- [i2]Felix Mölder, Kim Philipp Jablonski, Brice Letcher, Michael B. Hall, Christopher Tomkins-Tinch, Vanessa V. Sochat, Jan Forster, Soohyun Lee, Sven Twardziok, Alexander Kanitz, Andreas Wilm, Manuel Holtgrewe, Sven Rahmann, Sven Nahnsen, Johannes Köster:
Sustainable data analysis with Snakemake. F1000Research 10: 33 (2021) - 2020
- [j11]Manuel Holtgrewe, Clemens Messerschmidt, Mikko Nieminen, Dieter Beule:
DigestiFlow: from BCL to FASTQ with ease. Bioinform. 36(6): 1983-1985 (2020) - [j10]Mikko Nieminen, Oliver Stolpe, Franziska Schumann, Manuel Holtgrewe, Dieter Beule:
SODAR Core: a Django-based framework for scientific data management and analysis web apps. J. Open Source Softw. 5(55): 1584 (2020) - [j9]Manuel Holtgrewe, Oliver Stolpe, Mikko Nieminen, Stefan Mundlos, Alexej Knaus, Uwe Kornak, Dominik Seelow, Lara Segebrecht, Malte Spielmann, Björn Fischer-Zirnsak, Felix Boschann, Ute Scholl, Nadja Ehmke, Dieter Beule:
VarFish: comprehensive DNA variant analysis for diagnostics and research. Nucleic Acids Res. 48(Webserver-Issue): W162-W169 (2020)
2010 – 2019
- 2019
- [j8]Mathias Kuhring, Mikko Nieminen, Jennifer Kirwan, Dieter Beule, Manuel Holtgrewe:
AltamISA: a Python API for ISA-Tab files. J. Open Source Softw. 4(40): 1610 (2019) - 2017
- [j7]Clemens Messerschmidt, Manuel Holtgrewe, Dieter Beule:
HLA-MA: simple yet powerful matching of samples using HLA typing results. Bioinform. 33(14): 2241-2242 (2017) - 2016
- [j6]Manuel Holtgrewe, Dieter Beule:
VCFPy: a Python 3 library with good support for both reading and writing VCF. J. Open Source Softw. 1(6): 85 (2016) - 2015
- [b1]Manuel Holtgrewe:
Engineering Algorithms for Personal Genome Pipelines. Free University of Berlin, 2015 - [j5]Manuel Holtgrewe, Léon Kuchenbecker, Knut Reinert:
Methods for the detection and assembly of novel sequence in high-throughput sequencing data. Bioinform. 31(12): 1904-1912 (2015) - 2014
- [j4]Marcel H. Schulz, David Weese, Manuel Holtgrewe, Viktoria Dimitrova, Sijia Niu, Knut Reinert, Hugues Richard:
Fiona: a parallel and automatic strategy for read error correction. Bioinform. 30(17): 356-363 (2014) - [j3]Birte Kehr, Kathrin Trappe, Manuel Holtgrewe, Knut Reinert:
Genome alignment with graph data structures: a comparison. BMC Bioinform. 15: 99 (2014) - 2012
- [j2]David Weese, Manuel Holtgrewe, Knut Reinert:
RazerS 3: Faster, fully sensitive read mapping. Bioinform. 28(20): 2592-2599 (2012) - 2011
- [j1]Manuel Holtgrewe, Anne-Katrin Emde, David Weese, Knut Reinert:
A Novel And Well-Defined Benchmarking Method For Second Generation Read Mapping. BMC Bioinform. 12: 210 (2011) - 2010
- [c2]Marcel Birn, Manuel Holtgrewe, Peter Sanders, Johannes Singler:
Simple and Fast Nearest Neighbor Search. ALENEX 2010: 43-54 - [c1]Manuel Holtgrewe, Peter Sanders, Christian Schulz:
Engineering a scalable high quality graph partitioner. IPDPS 2010: 1-12
2000 – 2009
- 2009
- [i1]Manuel Holtgrewe, Peter Sanders, Christian Schulz:
Engineering a Scalable High Quality Graph Partitioner. CoRR abs/0910.2004 (2009)
Coauthor Index
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