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2020 – today
- 2024
[c145]Juyoung Yun, Shahira Abousamra, Chen Li, Rajarsi Gupta, Tahsin M. Kurç, Dimitris Samaras, Alison L. Van Dyke, Joel H. Saltz, Chao Chen:
Uncertainty Estimation for Tumor Prediction with Unlabeled Data. CVPR Workshops 2024: 6946-6954- [c144]Srikar Yellapragada, Alexandros Graikos, Prateek Prasanna, Tahsin M. Kurç, Joel H. Saltz, Dimitris Samaras:
PathLDM: Text conditioned Latent Diffusion Model for Histopathology. WACV 2024: 5170-5179 - 2023
- [j66]André L. S. Meirelles, Tahsin M. Kurç, Jun Kong
, Renato Ferreira, Joel H. Saltz, George Teodoro:
Effective and efficient active learning for deep learning-based tissue image analysis. Bioinform. 39(4) (2023) - [j65]Jakub R. Kaczmarzyk, Rajarsi Gupta, Tahsin M. Kurç, Shahira Abousamra, Joel H. Saltz, Peter K. Koo:
ChampKit: A framework for rapid evaluation of deep neural networks for patch-based histopathology classification. Comput. Methods Programs Biomed. 239: 107631 (2023) - [c143]Shahira Abousamra, Rajarsi Gupta, Tahsin M. Kurç, Dimitris Samaras, Joel H. Saltz, Chao Chen:
Topology-Guided Multi-Class Cell Context Generation for Digital Pathology. CVPR 2023: 3323-3333 - [c142]Shahira Abousamra, Danielle Fassler, Jiachen Yao, Rajarsi R. Gupta, Tahsin M. Kurç, Luisa F. Escobar-Hoyos, Dimitris Samaras, Kenneth Shroyer, Joel H. Saltz, Chao Chen:
Unsupervised Stain Decomposition via Inversion Regulation for Multiplex Immunohistochemistry Images. MIDL 2023: 74-94 - [i31]Annika Reinke, Minu Tizabi, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A. Emre Kavur, Tim Rädsch, Carole H. Sudre, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Matthew B. Blaschko, Florian Büttner, M. Jorge Cardoso, Veronika Cheplygina, Jianxu Chen, Evangelia Christodoulou, Beth A. Cimini, Gary S. Collins, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Ben Glocker, Patrick Godau, Robert Haase, Daniel A. Hashimoto, Michael M. Hoffman, Merel Huisman, Fabian Isensee, Pierre Jannin, Charles E. Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Alan Karthikesalingam, Hannes Kenngott, Jens Kleesiek, Florian Kofler, Thijs Kooi, Annette Kopp-Schneider, Michal Kozubek, Anna Kreshuk, Tahsin M. Kurç, Bennett A. Landman, Geert Litjens, Amin Madani, Klaus H. Maier-Hein, Anne L. Martel, Peter Mattson, Erik Meijering, Bjoern H. Menze, Karel G. M. Moons, Henning Müller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Susanne M. Rafelski, Nasir M. Rajpoot, Mauricio Reyes, Michael A. Riegler, Nicola Rieke, Julio Saez-Rodriguez, Clara I. Sánchez, Shravya Shetty, Maarten van Smeden, Ronald M. Summers, Abdel A. Taha, Aleksei Tiulpin, Sotirios A. Tsaftaris, Ben Van Calster, Gaël Varoquaux, Manuel Wiesenfarth, Ziv R. Yaniv, Paul F. Jäger, Lena Maier-Hein:
Understanding metric-related pitfalls in image analysis validation. CoRR abs/2302.01790 (2023) - [i30]Shahira Abousamra, Rajarsi Gupta, Tahsin M. Kurç, Dimitris Samaras, Joel H. Saltz, Chao Chen:
Topology-Guided Multi-Class Cell Context Generation for Digital Pathology. CoRR abs/2304.02255 (2023) - [i29]Srikar Yellapragada, Alexandros Graikos, Prateek Prasanna, Tahsin M. Kurç, Joel H. Saltz, Dimitris Samaras:
PathLDM: Text conditioned Latent Diffusion Model for Histopathology. CoRR abs/2309.00748 (2023) - [i28]Jakub R. Kaczmarzyk, Alan O'Callaghan, Fiona Inglis, Tahsin M. Kurç, Rajarsi Gupta, Erich Bremer, Peter Bankhead, Joel H. Saltz:
Open and reusable deep learning for pathology with WSInfer and QuPath. CoRR abs/2309.04631 (2023) - 2022
- [j64]André L. S. Meirelles, Tahsin M. Kurç, Joel H. Saltz, George Teodoro:
Effective active learning in digital pathology: A case study in tumor infiltrating lymphocytes. Comput. Methods Programs Biomed. 220: 106828 (2022) - [j63]Willian Barreiros Jr., Alba C. M. A. Melo, Jun Kong, Renato Ferreira, Tahsin M. Kurç, Joel H. Saltz, George Teodoro:
Efficient microscopy image analysis on CPU-GPU systems with cost-aware irregular data partitioning. J. Parallel Distributed Comput. 164: 40-54 (2022) - [c141]Saumya Gupta, Xiaoling Hu, James Kaan, Michael Jin, Mutshipay Mpoy, Katherine Chung, Gagandeep Singh, Mary M. Saltz, Tahsin M. Kurç, Joel H. Saltz, Apostolos Tassiopoulos, Prateek Prasanna, Chao Chen:
Learning Topological Interactions for Multi-Class Medical Image Segmentation. ECCV (29) 2022: 701-718 - [i27]Ujjwal Baid, Sarthak Pati, Tahsin M. Kurç, Rajarsi Gupta, Erich Bremer, Shahira Abousamra, Siddhesh P. Thakur, Joel H. Saltz, Spyridon Bakas:
Federated Learning for the Classification of Tumor Infiltrating Lymphocytes. CoRR abs/2203.16622 (2022) - [i26]Mahmudul Hasan, Jakub R. Kaczmarzyk, David Paredes, Lyanne Oblein, Jaymie Oentoro, Shahira Abousamra, Michael Horowitz, Dimitris Samaras, Chao Chen, Tahsin M. Kurç, Kenneth R. Shroyer, Joel H. Saltz:
A Novel Framework for Characterization of Tumor-Immune Spatial Relationships in Tumor Microenvironment. CoRR abs/2204.12283 (2022) - [i25]Lena Maier-Hein, Annika Reinke, Evangelia Christodoulou, Ben Glocker, Patrick Godau, Fabian Isensee, Jens Kleesiek, Michal Kozubek, Mauricio Reyes, Michael A. Riegler, Manuel Wiesenfarth, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A. Emre Kavur, Tim Rädsch, Minu Dietlinde Tizabi, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Peter Bankhead, Arriel Benis, M. Jorge Cardoso, Veronika Cheplygina, Beth A. Cimini, Gary S. Collins, Keyvan Farahani, Bram van Ginneken, Daniel A. Hashimoto, Michael M. Hoffman, Merel Huisman, Pierre Jannin, Charles E. Kahn, Alexandros Karargyris, Alan Karthikesalingam, Hannes Kenngott, Annette Kopp-Schneider, Anna Kreshuk, Tahsin M. Kurç, Bennett A. Landman, Geert Litjens, Amin Madani, Klaus H. Maier-Hein, Anne L. Martel, Peter Mattson, Erik Meijering, Bjoern H. Menze, David Moher, Karel G. M. Moons, Henning Müller, Felix Nickel, Brennan Nichyporuk, Jens Petersen, Nasir M. Rajpoot, Nicola Rieke, Julio Saez-Rodriguez, Clarisa Sánchez Gutiérrez, Shravya Shetty, Maarten van Smeden, Carole H. Sudre, Ronald M. Summers, Abdel A. Taha, Sotirios A. Tsaftaris, Ben Van Calster, Gaël Varoquaux, Paul F. Jäger:
Metrics reloaded: Pitfalls and recommendations for image analysis validation. CoRR abs/2206.01653 (2022) - [i24]Jakub R. Kaczmarzyk, Tahsin M. Kurç, Shahira Abousamra, Rajarsi Gupta, Joel H. Saltz, Peter K. Koo:
Evaluating histopathology transfer learning with ChampKit. CoRR abs/2206.06862 (2022) - [i23]Rajarsi Gupta, Jakub Kaczmarzyk, Soma Kobayashi, Tahsin M. Kurç, Joel H. Saltz:
AI and Pathology: Steering Treatment and Predicting Outcomes. CoRR abs/2206.07573 (2022) - [i22]Saumya Gupta, Xiaoling Hu, James Kaan, Michael Jin, Mutshipay Mpoy, Katherine Chung, Gagandeep Singh, Mary M. Saltz, Tahsin M. Kurç, Joel H. Saltz, Apostolos Tassiopoulos, Prateek Prasanna, Chao Chen:
Learning Topological Interactions for Multi-Class Medical Image Segmentation. CoRR abs/2207.09654 (2022) - 2021
- [j62]Jeremias M. Gomes, Jun Kong, Tahsin M. Kurç, Alba C. M. A. Melo, Renato Ferreira, Joel H. Saltz, George Teodoro:
Building robust pathology image analyses with uncertainty quantification. Comput. Methods Programs Biomed. 208: 106291 (2021) - [c140]Sritha Rajupet, Rachel Wong, Donna Moller, Lisa Maldonado, Tricia Weiss, Tahsin M. Kurç, Janos G. Hajagos, Hasit Shah, Mary M. Saltz, Joel H. Saltz, Veena Lingam:
Informatics to Power Post-COVID Care: A Framework for Patient Care and Secondary Data Use. AMIA 2021 - [c139]Siao Sun, Fusheng Wang, Sina Rashidian, Tahsin M. Kurç, Kayley Abell-Hart, Janos G. Hajagos, Wei Zhu, Mary M. Saltz, Joel H. Saltz:
Generating Longitudinal Synthetic EHR Data with Recurrent Autoencoders and Generative Adversarial Networks. AMIA 2021 - [c138]Siao Sun, Fusheng Wang, Sina Rashidian, Tahsin M. Kurç, Kayley Abell-Hart, Janos G. Hajagos, Wei Zhu, Mary M. Saltz, Joel H. Saltz:
Generating Longitudinal Synthetic EHR Data with Recurrent Autoencoders and Generative Adversarial Networks. Poly/DMAH@VLDB 2021: 153-165 - [c137]Shahira Abousamra, David Belinsky, John S. Van Arnam, Felicia Allard, Eric Yee, Rajarsi Gupta, Tahsin M. Kurç, Dimitris Samaras, Joel H. Saltz, Chao Chen:
Multi-Class Cell Detection Using Spatial Context Representation. ICCV 2021: 3985-3994 - [c136]Tong Shu, Yanfei Guo, Justin M. Wozniak, Xiaoning Ding, Ian T. Foster, Tahsin M. Kurç:
In-situ workflow auto-tuning through combining component models. PPoPP 2021: 467-468 - [c135]Tong Shu, Yanfei Guo, Justin M. Wozniak, Xiaoning Ding, Ian T. Foster, Tahsin M. Kurç:
Bootstrapping in-situ workflow auto-tuning via combining performance models of component applications. SC 2021: 28 - [c134]Ana Gainaru, Dmitry Ganyushin, Bing Xie, Tahsin M. Kurç, Joel H. Saltz, Sarp Oral, Norbert Podhorszki, Franz Poeschel, Axel Huebl, Scott Klasky:
Understanding and Leveraging the I/O Patterns of Emerging Machine Learning Analytics. SMC 2021: 119-138 - [i21]Annika Reinke, Matthias Eisenmann, Minu Dietlinde Tizabi, Carole H. Sudre, Tim Rädsch, Michela Antonelli, Tal Arbel, Spyridon Bakas, M. Jorge Cardoso, Veronika Cheplygina, Keyvan Farahani, Ben Glocker, Doreen Heckmann-Nötzel, Fabian Isensee, Pierre Jannin, Charles E. Kahn, Jens Kleesiek, Tahsin M. Kurç, Michal Kozubek, Bennett A. Landman, Geert Litjens, Klaus H. Maier-Hein, Bjoern H. Menze, Henning Müller, Jens Petersen, Mauricio Reyes, Nicola Rieke, Bram Stieltjes, Ronald M. Summers, Sotirios A. Tsaftaris, Bram van Ginneken, Annette Kopp-Schneider, Paul Jäger, Lena Maier-Hein:
Common Limitations of Image Processing Metrics: A Picture Story. CoRR abs/2104.05642 (2021) - [i20]Shahira Abousamra, David Belinsky, John S. Van Arnam, Felicia Allard, Eric Yee, Rajarsi Gupta, Tahsin M. Kurç, Dimitris Samaras, Joel H. Saltz, Chao Chen:
Multi-Class Cell Detection Using Spatial Context Representation. CoRR abs/2110.04886 (2021) - 2020
- [j61]Willian Barreiros Jr., Jeremias Moreira, Tahsin M. Kurç, Jun Kong, Alba C. M. A. Melo, Joel H. Saltz, George Teodoro:
Optimizing parameter sensitivity analysis of large-scale microscopy image analysis workflows with multilevel computation reuse. Concurr. Comput. Pract. Exp. 32(2) (2020) - [j60]Jeremy Logan, Mark Ainsworth, Chuck Atkins, Jieyang Chen, Jong Choi, Junmin Gu, James Kress, Greg Eisenhauer, Berk Geveci, William F. Godoy, Mark Kim, Tahsin M. Kurç, Qing Liu, Kshitij Mehta, George Ostrouchov, Norbert Podhorszki, David Pugmire, Eric Suchyta, Nicholas Thompson, Ozan Tugluk, Lipeng Wan, Ruonan Wang, Ben Whitney, Matthew Wolf, Kesheng Wu, Scott Klasky:
Extending the Publish/Subscribe Abstraction for High-Performance I/O and Data Management at Extreme Scale. IEEE Data Eng. Bull. 43(1): 35-46 (2020) - [j59]William F. Godoy, Norbert Podhorszki, Ruonan Wang, Chuck Atkins, Greg Eisenhauer, Junmin Gu, Philip E. Davis, Jong Choi, Kai Germaschewski, Kevin A. Huck, Axel Huebl, Mark Kim, James Kress, Tahsin M. Kurç, Qing Liu, Jeremy Logan, Kshitij Mehta, George Ostrouchov, Manish Parashar, Franz Poeschel, David Pugmire, Eric Suchyta, Keichi Takahashi, Nick Thompson, Seiji Tsutsumi, Lipeng Wan, Matthew Wolf, Kesheng Wu, Scott Klasky:
ADIOS 2: The Adaptable Input Output System. A framework for high-performance data management. SoftwareX 12: 100561 (2020) - [j58]Andreas S. Panayides, Amir A. Amini, Nenad D. Filipovic, Ashish Sharma, Sotirios A. Tsaftaris, Alistair A. Young, David J. Foran, Nhan Do, Spyretta Golemati, Tahsin M. Kurç, Kun Huang, Konstantina S. Nikita, Ben P. Veasey, Michalis E. Zervakis, Joel H. Saltz, Constantinos S. Pattichis:
AI in Medical Imaging Informatics: Current Challenges and Future Directions. IEEE J. Biomed. Health Informatics 24(7): 1837-1857 (2020) - [c133]David Paredes, Prateek Prasanna, Christina Preece, Rajarsi Gupta, Farzad Fereidouni, Dimitris Samaras, Tahsin M. Kurç, Richard M. Levenson, Patricia Thompson-Carino, Joel H. Saltz, Chao Chen:
Automated Assessment of the Curliness of Collagen Fiber in Breast Cancer. ECCV Workshops (1) 2020: 267-279 - [c132]Shahira Abousamra, Danielle Fassler, Le Hou, Yuwei Zhang, Rajarsi Gupta, Tahsin M. Kurç, Luisa F. Escobar-Hoyos, Dimitris Samaras, Beatrice Knudson, Kenneth Shroyer, Joel H. Saltz, Chao Chen:
Weakly-Supervised Deep Stain Decomposition for Multiplex IHC Images. ISBI 2020: 481-485 - [i19]Le Hou, Rajarsi Gupta, John S. Van Arnam, Yuwei Zhang, Kaustubh Sivalenka, Dimitris Samaras, Tahsin M. Kurç, Joel H. Saltz:
Dataset of Segmented Nuclei in Hematoxylin and Eosin Stained Histopathology Images of 10 Cancer Types. CoRR abs/2002.07913 (2020) - [i18]Tong Shu, Yanfei Guo, Justin M. Wozniak, Xiaoning Ding, Ian T. Foster, Tahsin M. Kurç:
In-situ Workflow Auto-tuning via Combining Performance Models of Component Applications. CoRR abs/2008.06991 (2020)
2010 – 2019
- 2019
- [j57]Jeremias M. Gomes, Willian Barreiros Jr., Tahsin M. Kurç, Alba C. M. A. Melo, Jun Kong, Joel H. Saltz, George Teodoro:
Sensitivity analysis in digital pathology: Handling large number of parameters with compute expensive workflows. Comput. Biol. Medicine 108: 371-381 (2019) - [j56]Justin M. Wozniak, Matthieu Dorier, Robert B. Ross, Tong Shu, Tahsin M. Kurç, Li Tang, Norbert Podhorszki, Matthew Wolf:
MPI jobs within MPI jobs: A practical way of enabling task-level fault-tolerance in HPC workflows. Future Gener. Comput. Syst. 101: 576-589 (2019) - [j55]Luis F. R. Taveira, Tahsin M. Kurç, Alba C. M. A. Melo, Jun Kong, Erich Bremer, Joel H. Saltz, George Teodoro:
Multi-objective Parameter Auto-tuning for Tissue Image Segmentation Workflows. J. Digit. Imaging 32(3): 521-533 (2019) - [j54]Le Hou, Vu Nguyen, Ariel B. Kanevsky, Dimitris Samaras, Tahsin M. Kurç, Tianhao Zhao, Rajarsi R. Gupta, Yi Gao, Wenjin Chen, David J. Foran, Joel H. Saltz:
Sparse autoencoder for unsupervised nucleus detection and representation in histopathology images. Pattern Recognit. 86: 188-200 (2019) - [c131]Rafael Marconi Ramos, Célia Ghedini Ralha, Tahsin M. Kurç, Joel H. Saltz, George Teodoro:
Increasing Accuracy of Medical CNN Applying Optimization Algorithms: An Image Classification Case. BRACIS 2019: 233-238 - [c130]Tahsin M. Kurç, Ashish Sharma, Rajarsi Gupta, Le Hou, Han Le, Shahira Abousamra, Erich Bremer, Ryan Birmingham, Tammy Diprima, Nan Li, Feiqiao Wang, Joseph Balsamo, Whitney Bremer, Dimitris Samaras, Joel H. Saltz:
From Whole Slide Tissues to Knowledge: Mapping Sub-cellular Morphology of Cancer. BrainLes@MICCAI (2) 2019: 371-379 - [c129]Le Hou, Ayush Agarwal, Dimitris Samaras, Tahsin M. Kurç, Rajarsi R. Gupta, Joel H. Saltz:
Robust Histopathology Image Analysis: To Label or to Synthesize? CVPR 2019: 8533-8542 - [c128]Jeremy Logan, Kshitij Mehta, Gerd Heber, Scott Klasky, Tahsin M. Kurç, Norbert Podhorszki, Patrick M. Widener, Matthew Wolf:
A Vision for Managing Extreme-Scale Data Hoards. ICDCS 2019: 1806-1817 - [c127]Han Le, Dimitris Samaras, Tahsin M. Kurç, Rajarsi Gupta, Kenneth Shroyer, Joel H. Saltz:
Pancreatic Cancer Detection in Whole Slide Images Using Noisy Label Annotations. MICCAI (1) 2019: 541-549 - [i17]Maozheng Zhao, Le Hou, Han Le, Dimitris Samaras, Nebojsa Jojic, Danielle Fassler, Tahsin M. Kurç, Rajarsi R. Gupta, Kolya Malkin, Shahira Abousamra, Kenneth Shroyer, Joel H. Saltz:
Label Super Resolution with Inter-Instance Loss. CoRR abs/1904.04429 (2019) - [i16]Han Le, Rajarsi R. Gupta, Le Hou, Shahira Abousamra, Danielle Fassler, Tahsin M. Kurç, Dimitris Samaras, Rebecca Batiste, Tianhao Zhao, Alison L. Van Dyke, Ashish Sharma, Erich Bremer, Jonas S. Almeida, Joel H. Saltz:
Utilizing Automated Breast Cancer Detection to Identify Spatial Distributions of Tumor Infiltrating Lymphocytes in Invasive Breast Cancer. CoRR abs/1905.10841 (2019) - [i15]Shahira Abousamra, Le Hou, Rajarsi R. Gupta, Chao Chen, Dimitris Samaras, Tahsin M. Kurç, Rebecca Batiste, Tianhao Zhao, Kenneth Shroyer, Joel H. Saltz:
Learning from Thresholds: Fully Automated Classification of Tumor Infiltrating Lymphocytes for Multiple Cancer Types. CoRR abs/1907.03960 (2019) - [i14]Eduardo Scartezini, Willian Barreiros Jr., Tahsin M. Kurç, Jun Kong, Alba C. M. A. Melo, Joel H. Saltz, George Teodoro:
Run-time Parameter Sensitivity Analysis Optimizations. CoRR abs/1910.14548 (2019) - 2018
- [j53]Jeremias M. Gomes, Alba Cristina Magalhaes Alves de Melo, Jun Kong, Tahsin M. Kurç, Joel H. Saltz, George Teodoro:
Cooperative and out-of-core execution of the irregular wavefront propagation pattern on hybrid machines with Intel® Xeon Phi™. Concurr. Comput. Pract. Exp. 30(14) (2018) - [c126]Tahsin M. Kurç, Joel H. Saltz, Fred W. Prior, Ashish Sharma:
Systems Demonstration: Towards a Services Oriented Platform for Combined Radiology-Pathology Image Analysis and Interpretation. AMIA 2018 - [c125]Scott Klasky, Matthew Wolf, Mark Ainsworth, Chuck Atkins, Jong Choi, Greg Eisenhauer, Berk Geveci, William F. Godoy, Mark Kim, James Kress, Tahsin M. Kurç, Qing Liu, Jeremy Logan, Arthur B. Maccabe, Kshitij Mehta, George Ostrouchov, Manish Parashar, Norbert Podhorszki, David Pugmire, Eric Suchyta, Lipeng Wan, Ruonan Wang:
A View from ORNL: Scientific Data Research Opportunities in the Big Data Age. ICDCS 2018: 1357-1368 - [i13]Luis F. R. Taveira, Tahsin M. Kurç, Alba C. M. A. Melo, Jun Kong, Erich Bremer, Joel H. Saltz, George Teodoro:
Tuning for Tissue Image Segmentation Workflows for Accuracy and Performance. CoRR abs/1810.02911 (2018) - [i12]Quoc Dang Vu, Simon Graham, Minh Nguyen Nhat To, Muhammad Shaban, Talha Qaiser, Navid Alemi Koohbanani, Syed Ali Khurram, Tahsin M. Kurç, Keyvan Farahani, Tianhao Zhao, Rajarsi R. Gupta, Jin Tae Kwak, Nasir M. Rajpoot, Joel H. Saltz:
Methods for Segmentation and Classification of Digital Microscopy Tissue Images. CoRR abs/1810.13230 (2018) - 2017
- [j52]George Teodoro, Tahsin M. Kurç, Luis F. R. Taveira, Alba C. M. A. Melo, Yi Gao:
Algorithm sensitivity analysis and parameter tuning for tissue image segmentation pipelines. Bioinform. 33(7): 1064-1072 (2017) - [j51]George Teodoro, Tahsin M. Kurç, Guilherme Andrade, Jun Kong, Renato Ferreira, Joel H. Saltz:
Application performance analysis and efficient execution on systems with multi-core CPUs, GPUs and MICs: a case study with microscopy image analysis. Int. J. High Perform. Comput. Appl. 31(1): 32-51 (2017) - [c124]Le Hou, Dimitris Samaras, Tahsin M. Kurç, Yi Gao, Joel H. Saltz:
ConvNets with Smooth Adaptive Activation Functions for Regression. AISTATS 2017: 430-439 - [c123]Joel H. Saltz, Ashish Sharma, Alexis B. Carter, Liron Pantanowitz, Tahsin M. Kurç:
20 Years of Digital Pathology - An Overview of the Road Travelled and What is on the Horizon. AMIA 2017 - [c122]Willian Barreiros, George Teodoro, Tahsin M. Kurç, Jun Kong, Alba C. M. A. Melo, Joel H. Saltz:
Parallel and Efficient Sensitivity Analysis of Microscopy Image Segmentation Workflows in Hybrid Systems. CLUSTER 2017: 25-35 - [c121]Jong Youl Choi, Jeremy Logan, Matthew Wolf, George Ostrouchov, Tahsin M. Kurç, Qing Liu, Norbert Podhorszki, Scott Klasky, Melissa Romanus, Qian Sun, Manish Parashar, Randy Michael Churchill, Choong-Seock Chang:
TGE: Machine Learning Based Task Graph Embedding for Large-Scale Topology Mapping. CLUSTER 2017: 587-591 - [c120]Ian T. Foster, Mark Ainsworth, Bryce Allen, Julie Bessac, Franck Cappello, Jong Youl Choi, Emil M. Constantinescu, Philip E. Davis, Sheng Di, Zichao Wendy Di, Hanqi Guo, Scott Klasky, Kerstin Kleese van Dam, Tahsin M. Kurç, Qing Liu, Abid Malik, Kshitij Mehta, Klaus Mueller, Todd S. Munson, George Ostrouchov, Manish Parashar, Tom Peterka, Line Pouchard, Dingwen Tao, Ozan Tugluk, Stefan M. Wild, Matthew Wolf, Justin M. Wozniak, Wei Xu, Shinjae Yoo:
Computing Just What You Need: Online Data Analysis and Reduction at Extreme Scales. Euro-Par 2017: 3-19 - [c119]Furqan Baig, Hoang Vo, Tahsin M. Kurç, Joel H. Saltz, Fusheng Wang:
SparkGIS: Resource Aware Efficient In-Memory Spatial Query Processing. SIGSPATIAL/GIS 2017: 28:1-28:10 - [c118]Qing Liu, Norbert Podhorszki, Jong Youl Choi, Jeremy Logan, Matthew Wolf, Scott Klasky, Tahsin M. Kurç, Xubin He:
StoreRush: An Application-Level Approach to Harvesting Idle Storage in a Best Effort Environment. ICCS 2017: 475-484 - [c117]Naiyun Zhou, Xiaxia Yu, Tianhao Zhao, Si Wen, Fusheng Wang, Wei Zhu, Tahsin M. Kurç, Allen R. Tannenbaum, Joel H. Saltz, Yi Gao:
Evaluation of nucleus segmentation in digital pathology images through large scale image synthesis. Digital Pathology 2017: 101400K - [c116]Veda Murthy, Le Hou, Dimitris Samaras, Tahsin M. Kurç, Joel H. Saltz:
Center-Focusing Multi-task CNN with Injected Features for Classification of Glioma Nuclear Images. WACV 2017: 834-841 - [i11]Le Hou, Vu Nguyen, Dimitris Samaras, Tahsin M. Kurç, Yi Gao, Tianhao Zhao, Joel H. Saltz:
Sparse Autoencoder for Unsupervised Nucleus Detection and Representation in Histopathology Images. CoRR abs/1704.00406 (2017) - [i10]Le Hou, Ayush Agarwal, Dimitris Samaras, Tahsin M. Kurç, Rajarsi R. Gupta, Joel H. Saltz:
Unsupervised Histopathology Image Synthesis. CoRR abs/1712.05021 (2017) - 2016
- [c115]Erich Bremer, Tahsin M. Kurç, Yi Gao, Joel H. Saltz, Jonas S. Almeida:
Safe "cloudification" of large images through picker APIs. AMIA 2016 - [c114]Veronica E. Lynn, Niranjan Balasubramanian, Tahsin M. Kurç, Joel H. Saltz, Rebecca Jacobson:
POE: A Pathology Extraction Tool for Finding Attribute-Value Pairs in Glioma Pathology Reports. AMIA 2016 - [c113]Le Hou, Dimitris Samaras, Tahsin M. Kurç, Yi Gao, James E. Davis, Joel H. Saltz:
Patch-Based Convolutional Neural Network for Whole Slide Tissue Image Classification. CVPR 2016: 2424-2433 - [c112]David Pugmire, James Kress, Jong Youl Choi, Scott Klasky, Tahsin M. Kurç, Michael Churchill, Matthew Wolf, Greg Eisenhauer, Hank Childs, Kesheng Wu, Alexander Sim, Junmin Gu, Jonathan Low:
Visualization and Analysis for Near-Real-Time Decision Making in Distributed Workflows. IPDPS Workshops 2016: 1007-1013 - [c111]Yi Gao, William Liu, Shipra Arjun, Liangjia Zhu, Vadim Ratner, Tahsin M. Kurç, Joel H. Saltz, Allen R. Tannenbaum:
Multi-scale learning based segmentation of glands in digital colonrectal pathology images. Digital Pathology 2016: 97910M - [c110]Yi Gao, Vadim Ratner, Liangjia Zhu, Tammy Diprima, Tahsin M. Kurç, Allen R. Tannenbaum, Joel H. Saltz:
Hierarchical nucleus segmentation in digital pathology images. Digital Pathology 2016: 979117 - [i9]Le Hou, Dimitris Samaras, Tahsin M. Kurç, Yi Gao, Joel H. Saltz:
Neural Networks with Smooth Adaptive Activation Functions for Regression. CoRR abs/1608.06557 (2016) - [i8]George Teodoro, Tahsin M. Kurç, Luis F. R. Taveira, Alba C. M. A. Melo, Jun Kong, Joel H. Saltz:
Efficient Methods and Parallel Execution for Algorithm Sensitivity Analysis with Parameter Tuning on Microscopy Imaging Datasets. CoRR abs/1612.03413 (2016) - [i7]Veda Murthy, Le Hou, Dimitris Samaras, Tahsin M. Kurç, Joel H. Saltz:
Center-Focusing Multi-task CNN with Injected Features for Classification of Glioma Nuclear Images. CoRR abs/1612.06825 (2016) - 2015
- [j50]Tahsin M. Kurç, Xin Qi, Daihou Wang, Fusheng Wang, George Teodoro, Lee Cooper, Michael Nalisnik, Lin Yang, Joel H. Saltz, David J. Foran:
Scalable analysis of Big pathology image data cohorts using efficient methods and high-performance computing strategies. BMC Bioinform. 16: 399:1-399:21 (2015) - [c109]Jonas S. Almeida, Janos G. Hajagos, Ivan Crnosija, Tahsin M. Kurç, Mary M. Saltz, Joel H. Saltz:
OpenHealth Platform for Interactive Contextualization of Population Health Open Data. AMIA 2015 - [c108]Mary M. Saltz, Joel H. Saltz, Janos G. Hajagos, Andrew White, Charles Boicey, Jim Murry, Ivan Crnosija, Tahsin M. Kurç, Erich Bremer, Jonas S. Almeida:
Integrative Informatics and Predictive Modeling Support for Population Health. AMIA 2015 - [c107]Jeremias M. Gomes, George Teodoro, Alba de Melo, Jun Kong, Tahsin M. Kurç, Joel H. Saltz:
Efficient Irregular Wavefront Propagation Algorithms on Intel(R) Xeon Phi(TM). SBAC-PAD 2015: 25-32 - [c106]Furqan Baig, Mudit Mehrotra, Hoang Vo, Fusheng Wang, Joel H. Saltz, Tahsin M. Kurç:
SparkGIS: Efficient Comparison and Evaluation of Algorithm Results in Tissue Image Analysis Studies. Big-O(Q)/DMAH@VLDB 2015: 134-146 - [i6]Le Hou, Dimitris Samaras, Tahsin M. Kurç, Yi Gao, James E. Davis, Joel H. Saltz:
Efficient Multiple Instance Convolutional Neural Networks for Gigapixel Resolution Image Classification. CoRR abs/1504.07947 (2015) - [i5]George Teodoro, Tahsin M. Kurç, Guilherme Andrade, Jun Kong, Renato Ferreira, Joel H. Saltz:
Performance Analysis and Efficient Execution on Systems with multi-core CPUs, GPUs and MICs. CoRR abs/1505.03819 (2015) - 2014
- [j49]Lin Yang, Xin Qi, Fuyong Xing, Tahsin M. Kurç, Joel H. Saltz, David J. Foran:
Parallel content-based sub-image retrieval using hierarchical searching. Bioinform. 30(7): 996-1002 (2014) - [j48]George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee Cooper, Scott Klasky, Joel H. Saltz:
Region templates: Data representation and management for high-throughput image analysis. Parallel Comput. 40(10): 589-610 (2014) - [c105]George Teodoro, Tahsin M. Kurç, Jun Kong, Lee Cooper, Joel H. Saltz:
Comparative Performance Analysis of Intel (R) Xeon Phi (TM), GPU, and CPU: A Case Study from Microscopy Image Analysis. IPDPS 2014: 1063-1072 - [c104]Guilherme Andrade, Renato Ferreira, George Teodoro, Leonardo Rocha, Joel H. Saltz, Tahsin M. Kurç:
Efficient Execution of Microscopy Image Analysis on CPU, GPU, and MIC Equipped Cluster Systems. SBAC-PAD 2014: 89-96 - [i4]George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee Cooper, Scott Klasky, Joel H. Saltz:
Region Templates: Data Representation and Management for Large-Scale Image Analysis. CoRR abs/1405.7958 (2014) - 2013
- [j47]Joel H. Saltz, George Teodoro, Tony Pan, Lee A. D. Cooper, Jun Kong, Scott Klasky, Tahsin M. Kurç:
Feature-based analysis of large-scale spatio-temporal sensor data on hybrid architectures. Int. J. High Perform. Comput. Appl. 27(3): 263-272 (2013) - [j46]Cristobal Vergara-Niedermayr, Fusheng Wang, Tony Pan, Tahsin M. Kurç, Joel H. Saltz:
Semantically Interoperable XML Data. Int. J. Semantic Comput. 7(3): 237-256 (2013) - [j45]David A. Gutman, Jake Cobb, Dhananjaya Somanna, Yuna Park, Fusheng Wang, Tahsin M. Kurç, Joel H. Saltz, Daniel J. Brat, Lee A. D. Cooper:
Research and applications: Cancer Digital Slide Archive: an informatics resource to support integrated in silico analysis of TCGA pathology data. J. Am. Medical Informatics Assoc. 20(6): 1091-1098 (2013) - [j44]Andrew R. Post, Tahsin M. Kurç, Sharath R. Cholleti, Jingjing Gao, Xia Lin, William Bornstein, Dedra Cantrell, David Levine, Sam Hohmann, Joel H. Saltz:
The Analytic Information Warehouse (AIW): A platform for analytics using electronic health record data. J. Biomed. Informatics 46(3): 410-424 (2013) - [j43]George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee A. D. Cooper, Joel H. Saltz:
Efficient irregular wavefront propagation algorithms on hybrid CPU-GPU machines. Parallel Comput. 39(4-5): 189-211 (2013) - [c103]Andrew R. Post, Tahsin M. Kurç, Richie Willard, Himanshu Rathod, Michel Mansour, Akshatha Kalsanka Pai, William M. Torian, Sanjay Agravat, Suzanne Sturm, Joel H. Saltz:
Temporal Abstraction-based Clinical Phenotyping with Eureka! AMIA 2013 - [c102]Andrew R. Post, Tahsin M. Kurç, Richie Willard, Himanshu Rathod, Michel Mansour, Akshatha Kalsanka Pai, William M. Torian, Sanjay Agravat, Suzanne Sturm, Joel H. Saltz:
Clinical Phenotyping with the Analytic Information Warehouse. AMIA 2013 - [c101]Jun Kong, Fusheng Wang, George Teodoro, Lee Cooper, Carlos Sanchez Moreno, Tahsin M. Kurç, Tony Pan, Joel H. Saltz, Daniel J. Brat:
High-performance computational analysis of glioblastoma pathology images with database support identifies molecular and survival correlates. BIBM 2013: 229-236 - [c100]George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee A. D. Cooper, Norbert Podhorszki, Scott Klasky, Joel H. Saltz:
High-throughput Analysis of Large Microscopy Image Datasets on CPU-GPU Cluster Platforms. IPDPS 2013: 103-114 - [i3]George Teodoro, Tahsin M. Kurç, Jun Kong, Lee Cooper, Joel H. Saltz:
Comparative Performance Analysis of Intel Xeon Phi, GPU, and CPU. CoRR abs/1311.0378 (2013) - 2012
- [j42]Lee A. D. Cooper, Jun Kong, David A. Gutman, Fusheng Wang, Jingjing Gao, Christina Appin, Sharath R. Cholleti, Tony Pan, Ashish Sharma, Lisa Scarpace, Tom Mikkelsen, Tahsin M. Kurç, Carlos Sanchez Moreno, Daniel J. Brat, Joel H. Saltz:
Integrated morphologic analysis for the identification and characterization of disease subtypes. J. Am. Medical Informatics Assoc. 19(2): 317-323 (2012) - [j41]Lee A. D. Cooper, Alexis B. Carter, Alton B. Farris, Fusheng Wang, Jun Kong, David A. Gutman, Patrick M. Widener, Tony C. Pan, Sharath R. Cholleti, Ashish Sharma, Tahsin M. Kurç, Daniel J. Brat, Joel H. Saltz:
Digital Pathology: Data-Intensive Frontier in Medical Imaging. Proc. IEEE 100(4): 991-1003 (2012) - [c99]Mijung Kim, Jake Cobb, Tahsin M. Kurç, Alessandro Orso, Mary Jean Harrold, Andrew R. Post, Shamkant B. Navathe, Joel H. Saltz:
Systematic Modeling, Testing, and Monitoring of Information Integrity in Federated Ontology-driven Data Sources. AMIA 2012 - [c98]Tahsin M. Kurç, Joel H. Saltz, George Teodoro, Tony Pan, Lee A. D. Cooper, Jun Kong, David A. Gutman, Daniel J. Brat, Fusheng Wang:
High Performance Computing for Integrative Analysis of Large Pathology Image Datasets. AMIA 2012 - [c97]George Teodoro, Tahsin M. Kurç, Tony Pan, Lee A. D. Cooper, Jun Kong, Patrick M. Widener, Joel H. Saltz:
Accelerating Large Scale Image Analyses on Parallel, CPU-GPU Equipped Systems. IPDPS 2012: 1093-1104 - [c96]Mijung Kim, Jake Cobb, Mary Jean Harrold, Tahsin M. Kurç, Alessandro Orso, Joel H. Saltz, Andrew R. Post, Kunal Malhotra, Shamkant B. Navathe:
Efficient regression testing of ontology-driven systems. ISSTA 2012: 320-330 - [i2]George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee Cooper, Joel H. Saltz:
Efficient Irregular Wavefront Propagation Algorithms on Hybrid CPU-GPU Machines. CoRR abs/1209.3314 (2012) - [i1]George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee A. D. Cooper, Joel H. Saltz:
High-throughput Execution of Hierarchical Analysis Pipelines on Hybrid Cluster Platforms. CoRR abs/1209.3332 (2012) - 2011
- [j40]David J. Foran, Lin Yang, Wenjin Chen, Jun Hu, Lauri A. Goodell, Michael Reiss, Fusheng Wang, Tahsin M. Kurç, Tony Pan, Ashish Sharma, Joel H. Saltz:
ImageMiner: a software system for comparative analysis of tissue microarrays using content-based image retrieval, high-performance computing, and grid technology. J. Am. Medical Informatics Assoc. 18(4): 403-415 (2011) - [j39]Naga Vydyanathan, Ümit V. Çatalyürek, Tahsin M. Kurç, Ponnuswamy Sadayappan, Joel H. Saltz:
Optimizing latency and throughput of application workflows on clusters. Parallel Comput. 37(10-11): 694-712 (2011) - [j38]Jun Kong, Lee A. D. Cooper, Fusheng Wang, David A. Gutman, Jingjing Gao, Candace Chisolm, Ashish Sharma, Tony Pan, Erwin G. Van Meir, Tahsin M. Kurç, Carlos Sanchez Moreno, Joel H. Saltz, Daniel J. Brat:
Integrative, Multimodal Analysis of Glioblastoma Using TCGA Molecular Data, Pathology Images, and Clinical Outcomes. IEEE Trans. Biomed. Eng. 58(12): 3469-3474 (2011) - [c95]Apurva Mohan, Douglas M. Blough, Tahsin M. Kurç, Andrew R. Post, Joel H. Saltz:
Detection of Conflicts and Inconsistencies in Taxonomy-Based Authorization Policies. BIBM 2011: 590-594 - [c94]Jun Kong, Lee Cooper, Carlos Sanchez Moreno, Fusheng Wang, Tahsin M. Kurç, Joel H. Saltz, Daniel J. Brat:
In silico analysis of nuclei in glioblastoma using large-scale microscopy images improves prediction of treatment response. EMBC 2011: 87-90 - [c93]Jun Kong, Lee Cooper, Tahsin M. Kurç, Daniel J. Brat, Joel H. Saltz:
Towards building computerized image analysis framework for nucleus discrimination in microscopy images of diffuse glioma. EMBC 2011: 6605-6608 - [c92]Lee A. D. Cooper, Jun Kong, Fusheng Wang, Tahsin M. Kurç, Carlos Sanchez Moreno, Daniel J. Brat, Joel H. Saltz:
Morphological signatures and genomic correlates in glioblastoma. ISBI 2011: 1624-1627 - [c91]Jun Kong, Lee Cooper, Fusheng Wang, Candace Chisolm, Carlos Sanchez Moreno, Tahsin M. Kurç, Patrick M. Widener, Daniel J. Brat, Joel H. Saltz:
A comprehensive framework for classification of nuclei in digital microscopy imaging: An application to diffuse gliomas. ISBI 2011: 2128-2131 - [c90]Jun Kong, Lee Cooper, Ashish Sharma, Tahsin M. Kurç, Daniel J. Brat, Joel H. Saltz:
A new steerable pressure force for parametric deformable models. Image Processing 2011: 79623N - 2010
- [j37]Vijay S. Kumar, Tahsin M. Kurç, Varun Ratnakar, Jihie Kim, Gaurang Mehta, Karan Vahi, Yoon-Ju Lee Nelson, P. Sadayappan, Ewa Deelman, Yolanda Gil, Mary W. Hall, Joel H. Saltz:
Parameterized specification, configuration and execution of data-intensive scientific workflows. Clust. Comput. 13(3): 315-333 (2010) - [j36]Lee A. D. Cooper, Jun Kong, David A. Gutman, Fusheng Wang, Sharath R. Cholleti, Tony C. Pan, Patrick M. Widener, Ashish Sharma, Tom Mikkelsen, Adam E. Flanders, Daniel L. Rubin, Erwin G. Van Meir, Tahsin M. Kurç, Carlos Sanchez Moreno, Daniel J. Brat, Joel H. Saltz:
An Integrative Approach for In Silico Glioma Research. IEEE Trans. Biomed. Eng. 57(10): 2617-2621 (2010) - [c89]Fusheng Wang, Tahsin M. Kurç, Patrick M. Widener, Tony Pan, Jun Kong, Lee Cooper, David A. Gutman, Ashish Sharma, Sharath R. Cholleti, Vijay Kumar:
High-Performance Systems for in Silico Microscopy Imaging Studies. DILS 2010: 3-18 - [c88]Jun Kong, Lee Cooper, Ashish Sharma, Tahsin M. Kurç, Daniel J. Brat, Joel H. Saltz:
Texture based image recognition in microscopy images of diffuse gliomas with multi-class gentle boosting mechanism. ICASSP 2010: 457-460 - [c87]Patrick M. Widener, Tahsin M. Kurç, Wenjin Chen, Fusheng Wang, Lin Yang, Jun Hu, Vijay Kumar, Vicky Chu, Lee Cooper, Jun Kong, Ashish Sharma, Tony Pan, Joel H. Saltz, David J. Foran:
High Performance Computing Techniques for Scaling Image Analysis Workflows. PARA (2) 2010: 67-77
2000 – 2009
- 2009
- [j35]Tahsin M. Kurç, Shannon Hastings, Vijay S. Kumar, Stephen Langella, Ashish Sharma, Tony Pan, Scott Oster, David Ervin, Justin Permar, Sivaramakrishnan Narayanan, Yolanda Gil, Ewa Deelman, Mary W. Hall, Joel H. Saltz:
HPC and Grid Computing for Integrative Biomedical Research. Int. J. High Perform. Comput. Appl. 23(3): 252-264 (2009) - [j34]Ashish Sharma, Tony Pan, Berkant Barla Cambazoglu, Metin N. Gurcan, Tahsin M. Kurç, Joel H. Saltz:
VirtualPACS - A Federating Gateway to Access Remote Image Data Resources over the Grid. J. Digit. Imaging 22(1): 1-10 (2009) - [j33]Nagavijayalakshmi Vydyanathan, Sriram Krishnamoorthy, Gerald M. Sabin, Ümit V. Çatalyürek, Tahsin M. Kurç, P. Sadayappan, Joel H. Saltz:
An Integrated Approach to Locality-Conscious Processor Allocation and Scheduling of Mixed-Parallel Applications. IEEE Trans. Parallel Distributed Syst. 20(8): 1158-1172 (2009) - [c86]Terry Camerlengo, Hatice Gulcin Ozer, Pearlly Yan, Jeffrey D. Parvin, Tim Hui-Ming Huang, Kun Huang, Mingxiang Teng, Lang Li, Yunlong Liu, Francisco Perez, Tahsin M. Kurç:
Enabling Data Analysis on High-Throughput Data in Large Data Depository Using Web-Based Analysis Platform - A Case Study on Integrating QUEST with GenePattern in Epigenetics Research. BIBM 2009: 392-395 - [c85]Vijay S. Kumar, P. Sadayappan, Gaurang Mehta, Karan Vahi, Ewa Deelman, Varun Ratnakar, Jihie Kim, Yolanda Gil, Mary W. Hall, Tahsin M. Kurç, Joel H. Saltz:
An integrated framework for performance-based optimization of scientific workflows. HPDC 2009: 177-186 - [c84]Vijay S. Kumar, Tahsin M. Kurç, Joel H. Saltz, Ghaleb Abdulla, Scott R. Kohn, Celeste Matarazzo:
Architectural implications for spatial object association algorithms. IPDPS 2009: 1-12 - [c83]David J. Foran, Lin Yang, Oncel Tuzel, Wenjin Chen, Jun Hu, Tahsin M. Kurç, Renato Ferreira, Joel H. Saltz:
A caGrid-Enabled, Learning Based Image Segmentation Method for Histopathology Specimens. ISBI 2009: 1306-1309 - [c82]Sivaramakrishnan Narayanan, Ümit V. Çatalyürek, Tahsin M. Kurç, Joel H. Saltz:
Parallel materialization of large ABoxes. SAC 2009: 1257-1261 - 2008
- [j32]Vijay S. Kumar, Sivaramakrishnan Narayanan, Tahsin M. Kurç, Jun Kong, Metin N. Gurcan, Joel H. Saltz:
Analysis and Semantic Querying in Large Biomedical Image Datasets. Computer 41(4): 52-59 (2008) - [j31]Joel H. Saltz, Tahsin M. Kurç, Shannon Hastings, Stephen Langella, Scott Oster, David Ervin, Ashish Sharma, Tony Pan, Metin N. Gurcan, Justin Permar, Renato Ferreira, Philip R. O. Payne, Ümit V. Çatalyürek, Enrico Caserta, Gustavo Leone, Michael C. Ostrowski, Ravi K. Madduri, Ian T. Foster, Subhasree Madhavan, Kenneth H. Buetow, Krishnakant Shanbhag, Eliot L. Siegel:
e-Science, caGrid, and Translational Biomedical Research. Computer 41(11): 58-66 (2008) - [j30]George Teodoro, Tulio Tavares, Renato Ferreira, Tahsin M. Kurç, Wagner Meira Jr., Dorgival Olavo Guedes Neto, Tony Pan, Joel H. Saltz:
A Run-time System for Efficient Execution of Scientific Workflows on Distributed Environments. Int. J. Parallel Program. 36(2): 250-266 (2008) - [j29]Scott Oster, Stephen Langella, Shannon Hastings, David Ervin, Ravi K. Madduri, Joshua Phillips, Tahsin M. Kurç, Frank Siebenlist, Peter A. Covitz, Krishnakant Shanbhag, Ian T. Foster, Joel H. Saltz:
Model Formulation: caGrid 1.0: An Enterprise Grid Infrastructure for Biomedical Research. J. Am. Medical Informatics Assoc. 15(2): 138-149 (2008) - [j28]Stephen Langella, Shannon Hastings, Scott Oster, Tony Pan, Ashish Sharma, Justin Permar, David Ervin, Berkant Barla Cambazoglu, Tahsin M. Kurç, Joel H. Saltz:
Model Formulation: Sharing Data and Analytical Resources Securely in a Biomedical Research Grid Environment. J. Am. Medical Informatics Assoc. 15(3): 363-373 (2008) - [j27]Kishore Mosaliganti, Tony Pan, Randall Ridgway, Richard Sharp, Lee Cooper, Alex Gulacy, Ashish Sharma, M. Okan Irfanoglu, Raghu Machiraju, Tahsin M. Kurç, Alain de Bruin, Pamela Wenzel, Gustavo Leone, Joel H. Saltz, Kun Huang:
An imaging workflow for characterizing phenotypical change in large histological mouse model datasets. J. Biomed. Informatics 41(6): 863-873 (2008) - [j26]Vijay S. Kumar, Benjamin Rutt, Tahsin M. Kurç, Ümit V. Çatalyürek, Tony C. Pan, Sunny K. Chow, Stephan Lamont, Maryann E. Martone, Joel H. Saltz:
Large-Scale Biomedical Image Analysis in Grid Environments. IEEE Trans. Inf. Technol. Biomed. 12(2): 154-161 (2008) - [c81]Joel H. Saltz, Shannon Hastings, Stephen Langella, Scott Oster, Tahsin M. Kurç, Philip R. O. Payne, Renato Ferreira, Beth Plale, Carole A. Goble, David Ervin, Ashish Sharma, Tony Pan, Justin Permar, Peter Brezany, Frank Siebenlist, Ravi K. Madduri, Ian T. Foster, Krishnakant Shanbhag, Charlie Mead, Neil P. Chue Hong:
A Roadmap for caGrid, an Enterprise Grid Architecture for Biomedical Research. HealthGrid 2008: 224-237 - [c80]Gaurav Khanna, Ümit V. Çatalyürek, Tahsin M. Kurç, P. Sadayappan, Joel H. Saltz, Rajkumar Kettimuthu, Ian T. Foster:
Multi-hop path splitting and multi-pathing optimizations for data transfers over shared wide-area networks using gridFTP. HPDC 2008: 225-226 - [c79]Nagavijayalakshmi Vydyanathan, Ümit V. Çatalyürek, Tahsin M. Kurç, P. Sadayappan, Joel H. Saltz:
A Duplication Based Algorithm for Optimizing Latency Under Throughput Constraints for Streaming Workflows. ICPP 2008: 254-261 - [c78]Gaurav Khanna, Ümit V. Çatalyürek, Tahsin M. Kurç, Rajkumar Kettimuthu, P. Sadayappan, Joel H. Saltz:
A dynamic scheduling approach for coordinated wide-area data transfers using GridFTP. IPDPS 2008: 1-12 - [c77]Vijay S. Kumar, Mary W. Hall, Jihie Kim, Yolanda Gil, Tahsin M. Kurç, Ewa Deelman, Varun Ratnakar, Joel H. Saltz:
Designing and parameterizing a workflow for optimization: A case study in biomedical imaging. IPDPS 2008: 1-5 - [c76]Joel H. Saltz, Scott Oster, Shannon Hastings, Stephen Langella, Renato Ferreira, Justin Permar, Ashish Sharma, David Ervin, Tony Pan, Ümit V. Çatalyürek, Tahsin M. Kurç:
Translational research design templates, Grid computing, and HPC. IPDPS 2008: 1-15 - [c75]Gaurav Khanna, Ümit V. Çatalyürek, Tahsin M. Kurç, Rajkumar Kettimuthu, P. Sadayappan, Ian T. Foster, Joel H. Saltz:
Using overlays for efficient data transfer over shared wide-area networks. SC 2008: 47 - 2007
- [j25]Brent Woods, Bradley D. Clymer, Johannes T. Heverhagen, Michael V. Knopp, Joel H. Saltz, Tahsin M. Kurç:
Parallel four-dimensional Haralick texture analysis for disk-resident image datasets. Concurr. Comput. Pract. Exp. 19(1): 65-87 (2007) - [j24]Shannon Hastings, Scott Oster, Stephen Langella, David Ervin, Tahsin M. Kurç, Joel H. Saltz:
Introduce: An Open Source Toolkit for Rapid Development of Strongly Typed Grid Services. J. Grid Comput. 5(4): 407-427 (2007) - [j23]Metin N. Gurcan, Tony Pan, Ashish Sharma, Tahsin M. Kurç, Scott Oster, Stephen Langella, Shannon Hastings, Khan M. Siddiqui, Eliot L. Siegel, Joel H. Saltz:
GridIMAGE: A Novel Use of Grid Computing to Support Interactive Human and Computer-Assisted Detection Decision Support. J. Digit. Imaging 20(2): 160-171 (2007) - [j22]Cevdet Aykanat, Berkant Barla Cambazoglu, Ferit Findik, Tahsin M. Kurç:
Adaptive decomposition and remapping algorithms for object-space-parallel direct volume rendering of unstructured grids. J. Parallel Distributed Comput. 67(1): 77-99 (2007) - [j21]Henrique Andrade, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz:
Active semantic caching to optimize multidimensional data analysis in parallel and distributed environments. Parallel Comput. 33(7-8): 497-520 (2007) - [c74]Stephen Langella, Scott Oster, Shannon Hastings, Frank Siebenlist, Joshua Phillips, David Ervin, Justin Permar, Tahsin M. Kurç, Joel H. Saltz:
The Cancer Biomedical Informatics Grid (caBIG™) Security Infrastructure. AMIA 2007 - [c73]Scott Oster, Stephen Langella, Shannon Hastings, David Ervin, Ravi K. Madduri, Tahsin M. Kurç, Frank Siebenlist, Peter A. Covitz, Krishnakant Shanbhag, Ian T. Foster, Joel H. Saltz:
caGrid 1.0: A Grid Enterprise Architecture for Cancer Research. AMIA 2007 - [c72]Tulio Tavares, George Teodoro, Tahsin M. Kurç, Renato Ferreira, Dorgival Olavo Guedes Neto, Wagner Meira Jr., Ümit V. Çatalyürek, Shannon Hastings, Scott Oster, Stephen Langella, Joel H. Saltz:
An Efficient and Reliable Scientific Workflow System. CCGRID 2007: 445-452 - [c71]Vijay S. Kumar, Tahsin M. Kurç, Jun Kong, Ümit V. Çatalyürek, Metin N. Gurcan, Joel H. Saltz:
Performance vs. accuracy trade-offs for large-scale image analysis applications. CLUSTER 2007: 100-109 - [c70]Nagavijayalakshmi Vydyanathan, Ümit V. Çatalyürek, Tahsin M. Kurç, P. Sadayappan, Joel H. Saltz:
Toward Optimizing Latency Under Throughput Constraints for Application Workflows on Clusters. Euro-Par 2007: 173-183 - [c69]Gaurav Khanna, Ümit V. Çatalyürek, Tahsin M. Kurç, P. Sadayappan, Joel H. Saltz:
Scheduling File Transfers for Data-Intensive Jobs on Heterogeneous Clusters. Euro-Par 2007: 214-223 - [c68]Li Weng, Ümit V. Çatalyürek, Tahsin M. Kurç, Gagan Agrawal, Joel H. Saltz:
Optimizing multiple queries on scientific datasets with partial replicas. GRID 2007: 259-266 - [c67]Tahsin M. Kurç, Xi Zhang, Manish Parashar, Hector Klie, Mary F. Wheeler, Ümit V. Çatalyürek, Joel H. Saltz:
Dynamic Data-Driven Systems Approach for Simulation Based Optimizations. International Conference on Computational Science (1) 2007: 1213-1221 - [c66]Bhupesh Bansal, Ümit V. Çatalyürek, Jacqueline Chame, Chun Chen, Ewa Deelman, Yolanda Gil, Mary W. Hall, Vijay S. Kumar, Tahsin M. Kurç, Kristina Lerman, Aiichiro Nakano, Yoon-Ju Lee Nelson, Joel H. Saltz, Ashish Sharma, Priya Vashishta:
Intelligent Optimization of Parallel and Distributed Applications. IPDPS 2007: 1-6 - [c65]Amol Ghoting, Gregory Buehrer, Matthew Goyder, Shirish Tatikonda, Xi Zhang, Srinivasan Parthasarathy, Tahsin M. Kurç, Joel H. Saltz:
Knowledge and Cache Conscious Algorithm Design and Systems Support for Data Mining Algorithms. IPDPS 2007: 1-6 - [c64]Gregory Buehrer, Srinivasan Parthasarathy, Shirish Tatikonda, Tahsin M. Kurç, Joel H. Saltz:
Toward terabyte pattern mining: an architecture-conscious solution. PPoPP 2007: 2-12 - 2006
- [j20]Joel H. Saltz, Scott Oster, Shannon Hastings, Stephen Langella, Tahsin M. Kurç, William Sanchez, Manav Kher, Arumani Manisundaram, Krishnakant Shanbhag, Peter A. Covitz:
caGrid: design and implementation of the core architecture of the cancer biomedical informatics grid. Bioinform. 22(15): 1910-1916 (2006) - [j19]Hector Klie, Wolfgang Bangerth, X. Gai, Mary F. Wheeler, Paul L. Stoffa, Mrinal K. Sen, Manish Parashar, Ümit V. Çatalyürek, Joel H. Saltz, Tahsin M. Kurç:
Models, methods and middleware for grid-enabled multiphysics oil reservoir management. Eng. Comput. 22(3-4): 349-370 (2006) - [j18]Xi Zhang, Benjamin Rutt, Ümit V. Çatalyürek, Tahsin M. Kurç, Paul L. Stoffa, Mrinal K. Sen, Joel H. Saltz:
Supporting Scalable and Distributed Data Subsetting and Aggregation in Large-Scale Seismic Data Analysis. Int. J. High Perform. Comput. Appl. 20(3): 423-438 (2006) - [j17]Tahsin M. Kurç, Daniel Janies, Andrew D. Johnson, Stephen Langella, Scott Oster, Shannon Hastings, Farhat Habib, Terry Camerlengo, David Ervin, Ümit V. Çatalyürek, Joel H. Saltz:
Application of Information Technology: An XML-based System for Synthesis of Data from Disparate Databases. J. Am. Medical Informatics Assoc. 13(3): 289-301 (2006) - [c63]Stephen Langella, Scott Oster, Shannon Hastings, Frank Siebenlist, Tahsin M. Kurç, Joel H. Saltz:
Dorian: Grid Service Infrastructure for Identity Management and Federation. CBMS 2006: 756-761 - [c62]Shirish Tatikonda, Srinivasan Parthasarathy, Tahsin M. Kurç:
TRIPS and TIDES: new algorithms for tree mining. CIKM 2006: 455-464 - [c61]Nagavijayalakshmi Vydyanathan, Sriram Krishnamoorthy, Gerald Sabin, Ümit V. Çatalyürek, Tahsin M. Kurç, P. Sadayappan, Joel H. Saltz:
Locality Conscious Processor Allocation and Scheduling for Mixed Parallel Applications. CLUSTER 2006 - [c60]Ümit V. Çatalyürek, Sivaramakrishnan Narayanan, Olcay Sertel, Jun Kong, Berkant Barla Cambazoglu, Tony Pan, Ashish Sharma, Shannon Hastings, Stephen Langella, Scott Oster, Tahsin M. Kurç, Metin Nafi Gürcan, Joel H. Saltz:
Service-Based Access to and Processing of Large Scientific Datasets. High Performance Computing Workshop 2006: 345-362 - [c59]Gaurav Khanna, Nagavijayalakshmi Vydyanathan, Ümit V. Çatalyürek, Tahsin M. Kurç, Sriram Krishnamoorthy, P. Sadayappan, Joel H. Saltz:
Task Scheduling and File Replication for Data-Intensive Jobs with Batch-shared I/O. HPDC 2006: 241-252 - [c58]Manish Parashar, Vincent Matossian, Hector Klie, Sunil G. Thomas, Mary F. Wheeler, Tahsin M. Kurç, Joel H. Saltz, Roelof Versteeg:
Towards Dynamic Data-Driven Management of the Ruby Gulch Waste Repository. International Conference on Computational Science (3) 2006: 384-392 - [c57]Li Weng, Ümit V. Çatalyürek, Tahsin M. Kurç, Gagan Agrawal, Joel H. Saltz:
Using Space and Attribute Partitioned Partial Replicas for Data Subsetting and Aggregation Queries. ICPP 2006: 271-280 - [c56]Nagavijayalakshmi Vydyanathan, Sriram Krishnamoorthy, Gerald Sabin, Ümit V. Çatalyürek, Tahsin M. Kurç, P. Sadayappan, Joel H. Saltz:
An Integrated Approach for Processor Allocation and Scheduling of Mixed-Parallel Applications. ICPP 2006: 443-450 - [c55]Sivaramakrishnan Narayanan, Tahsin M. Kurç, Ümit V. Çatalyürek, Joel H. Saltz:
On Creating Efficient Object-relational Views of Scientific Datasets. ICPP 2006: 551-558 - [c54]Gregory Buehrer, Amol Ghoting, Xi Zhang, Shirish Tatikonda, Srinivasan Parthasarathy, Tahsin M. Kurç, Joel H. Saltz:
I/O conscious algorithm design and systems support for data analysis on emerging architectures. IPDPS 2006 - [c53]Xi Zhang, Tahsin M. Kurç, Joel H. Saltz, Srinivasan Parthasarathy:
Design and analysis of a multi-dimensional data sampling service for large scale data analysis applications. IPDPS 2006 - [c52]Gaurav Khanna, Ümit V. Çatalyürek, Tahsin M. Kurç, P. Sadayappan, Joel H. Saltz:
A Data Locality Aware Online Scheduling Approach for I/O-Intensive Jobs with File Sharing. JSSPP 2006: 141-160 - [c51]George Teodoro, Tulio Tavares, Renato Ferreira, Tahsin M. Kurç, Wagner Meira Jr., Dorgival Olavo Guedes Neto, Tony Pan, Joel H. Saltz:
A Run-time System for Efficient Execution of Scientific Workflows on Distributed Environments. SBAC-PAD 2006: 81-90 - [c50]Vijay S. Kumar, Benjamin Rutt, Tahsin M. Kurç, Ümit V. Çatalyürek, Joel H. Saltz, Sunny K. Chow, Stephan Lamont, Maryann E. Martone:
Imaging and visual analysis - Large image correction and warping in a cluster environment. SC 2006: 79 - 2005
- [j16]Tahsin M. Kurç, Ümit V. Çatalyürek, Xi Zhang, Joel H. Saltz, Ryan Martino, Mary F. Wheeler, Malgorzata Peszynska, Alan Sussman, Christian Hansen, Mrinal K. Sen, Roustam Seifoullaev, Paul L. Stoffa, Carlos Torres-Verdín, Manish Parashar:
A simulation and data analysis system for large-scale, data-driven oil reservoir simulation studies. Concurr. Pract. Exp. 17(11): 1441-1467 (2005) - [j15]Manish Parashar, Hector Klie, Ümit V. Çatalyürek, Tahsin M. Kurç, Wolfgang Bangerth, Vincent Matossian, Joel H. Saltz, Mary F. Wheeler:
Application of Grid-enabled technologies for solving optimization problems in data-driven reservoir studies. Future Gener. Comput. Syst. 21(1): 19-26 (2005) - [j14]Shannon Hastings, Scott Oster, Stephen Langella, Tahsin M. Kurç, Tony Pan, Ümit V. Çatalyürek, Joel H. Saltz:
Application of Information Technology: A Grid-Based Image Archival and Analysis System. J. Am. Medical Informatics Assoc. 12(3): 286-295 (2005) - [j13]Shannon Hastings, Matheus Ribeiro, Stephen Langella, Scott Oster, Ümit V. Çatalyürek, Tony Pan, Kun Huang, Renato Ferreira, Joel H. Saltz, Tahsin M. Kurç:
XML database support for distributed execution of data-intensive scientific workflows. SIGMOD Rec. 34(3): 50-55 (2005) - [c49]Li Weng, Ümit V. Çatalyürek, Tahsin M. Kurç, Gagan Agrawal, Joel H. Saltz:
Servicing range queries on multidimensional datasets with partial replicas. CCGRID 2005: 726-733 - [c48]Gaurav Khanna, Nagavijayalakshmi Vydyanathan, Tahsin M. Kurç, Ümit V. Çatalyürek, Pete Wyckoff, Joel H. Saltz, P. Sadayappan:
A hypergraph partitioning based approach for scheduling of tasks with batch-shared I/O. CCGRID 2005: 792-799 - [c47]Benjamin Rutt, Vijay S. Kumar, Tony Pan, Tahsin M. Kurç, Ümit V. Çatalyürek, Joel H. Saltz, Yujun Wang:
Distributed Out-of-Core Preprocessing of Very Large Microscopy Images for Efficient Querying. CLUSTER 2005: 1-10 - [c46]Sivaramakrishnan Narayanan, Tahsin M. Kurç, Ümit V. Çatalyürek, Joel H. Saltz:
Servicing Seismic and Oil Reservoir Simulation Data Through Grid Data Services. DMG 2005: 129-142 - [c45]Manish Parashar, Vincent Matossian, Wolfgang Bangerth, Hector Klie, Benjamin Rutt, Tahsin M. Kurç, Ümit V. Çatalyürek, Joel H. Saltz, Mary F. Wheeler:
Towards Dynamic Data-Driven Optimization of Oil Well Placement. International Conference on Computational Science (2) 2005: 656-663 - [c44]Huai Wang, Srinivasan Parthasarathy, Amol Ghoting, Shirish Tatikonda, Gregory Buehrer, Tahsin M. Kurç, Joel H. Saltz:
Design of a next generation sampling service for large scale data analysis applications. ICS 2005: 91-100 - [c43]Huai Wang, Amol Ghoting, Gregory Buehrer, Shirish Tatikonda, Srinivasan Parthasarathy, Tahsin M. Kurç, Joel H. Saltz:
A Services Oriented Framework for Next Generation Data Analysis Centers. IPDPS 2005 - [c42]Ümit V. Çatalyürek, Shannon Hastings, Kun Huang, Vijay S. Kumar, Tahsin M. Kurç, Stephen Langella, Sivaramakrishnan Narayanan, Scott Oster, Tony Pan, Benjamin Rutt, Xi Zhang, Joel H. Saltz:
Supporting Large Scale Medical and Scientific Datasets. PARCO 2005: 3-14 - [c41]Shannon Hastings, Stephen Langella, Scott Oster, Tahsin M. Kurç, Tony Pan, Ümit V. Çatalyürek, Daniel Janies, Joel H. Saltz:
Grid-based management of biomedical data using an XML-based distributed data management system. SAC 2005: 105-109 - 2004
- [j12]Henrique Andrade, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz:
Optimizing the Execution of Multiple Data Analysis Queries on Parallel and Distributed Environments. IEEE Trans. Parallel Distributed Syst. 15(6): 520-532 (2004) - [c40]Xi Zhang, Tony Pan, Ümit V. Çatalyürek, Tahsin M. Kurç, Joel H. Saltz:
Serving queries to multi-resolution datasets on disk-based storage clusters. CCGRID 2004: 490-498 - [c39]Stephen Langella, Shannon Hastings, Scott Oster, Tahsin M. Kurç, Ümit V. Çatalyürek, Joel H. Saltz:
A distributed data management middleware for data-driven application systems. CLUSTER 2004: 267-276 - [c38]Nagavijayalakshmi Vydyanathan, Gaurav Khanna, Tahsin M. Kurç, Ümit V. Çatalyürek, Pete Wyckoff, Joel H. Saltz, P. Sadayappan:
Use of PVFS for Efficient Execution of Jobs with Pipeline-Shared I/O. GRID 2004: 235-242 - [c37]Matheus Ribeiro, Tahsin M. Kurç, Tony Pan, Kun Huang, Ümit V. Çatalyürek, Xi Zhang, Stephen Langella, Shannon Hastings, Scott Oster, Renato Ferreira, Joel H. Saltz:
Tools for efficient subsetting and pipelined processing of large scale, distributed biomedical image data. High Performance Computing Workshop 2004: 403-422 - [c36]Xi Zhang, Tahsin M. Kurç, Tony Pan, Ümit V. Çatalyürek, Sivaramakrishnan Narayanan, Pete Wyckoff, Joel H. Saltz:
Strategies for Using Additional Resources in Parallel Hash-Based Join Algorithms. HPDC 2004: 4-13 - [c35]Li Weng, Gagan Agrawal, Ümit V. Çatalyürek, Tahsin M. Kurç, Sivaramakrishnan Narayanan, Joel H. Saltz:
An Approach for Automatic Data Virtualization. HPDC 2004: 24-33 - [c34]Manish Parashar, Hector Klie, Ümit V. Çatalyürek, Tahsin M. Kurç, Vincent Matossian, Joel H. Saltz, Mary F. Wheeler:
Application of Grid-Enabled Technologies for Solving Optimization Problems in Data-Driven Reservoir Studies. International Conference on Computational Science 2004: 805-812 - [c33]Brent Woods, Bradley D. Clymer, Joel H. Saltz, Tahsin M. Kurç:
A Parallel Implementation of 4-Dimensional Haralick Texture Analysis for Disk-Resident Image Datasets. SC 2004: 48 - 2003
- [j11]Sivaramakrishnan Narayanan, Tahsin M. Kurç, Ümit V. Çatalyürek, Joel H. Saltz:
Database Support for Data-Driven Scientific Applications in the Grid. Parallel Process. Lett. 13(2): 245-271 (2003) - [j10]Ümit V. Çatalyürek, Michael D. Beynon, Chialin Chang, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz:
The virtual microscope. IEEE Trans. Inf. Technol. Biomed. 7(4): 230-248 (2003) - [c32]Shannon Hastings, Tahsin M. Kurç, Stephen Langella, Ümit V. Çatalyürek, Tony Pan, Joel H. Saltz:
Image Processing or the Grid: A Toolkit or Building Grid-enabled Image Processing Applications. CCGRID 2003: 36-43 - [c31]Radhakrishnan Sundaresan, Tahsin M. Kurç, Mario Lauria, Srinivasan Parthasarathy, Joel H. Saltz:
A Slacker Coherence rotocol for Pull-based Monitoring of On-line Data Source. CCGRID 2003: 250-257 - [c30]Sivaramakrishnan Narayanan, Ümit V. Çatalyürek, Tahsin M. Kurç, Xi Zhang, Joel H. Saltz:
Applying Database Support for Large Scale Data Driven Science in Distributed Environments. GRID 2003: 141-148 - [c29]Pavan Balaji, Jiesheng Wu, Tahsin M. Kurç, Ümit V. Çatalyürek, Dhabaleswar K. Panda, Joel H. Saltz:
Impact of High Performance Sockets on Data Intensive Applications. HPDC 2003: 24-33 - [c28]Radhakrishnan Sundaresan, Mario Lauria, Tahsin M. Kurç, Srinivasan Parthasarathy, Joel H. Saltz:
Adaptive Polling of Grid Resource Monitors Using a Slacker Coherence Model. HPDC 2003: 260-269 - [c27]Joel H. Saltz, Ümit V. Çatalyürek, Tahsin M. Kurç, Mike Gray, Shannon Hastings, Stephen Langella, Sivaramakrishnan Narayanan, Ryan Martino, Steven Bryant, Malgorzata Peszynska, Mary F. Wheeler, Alan Sussman, Michael D. Beynon, Christian Hansen, Don Stredney, Dennis Sessanna:
Driving Scientific Applications by Data in Distributed Environments. International Conference on Computational Science 2003: 355-364 - [c26]Henrique Andrade, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz:
Exploiting Functional Decomposition for Efficient Parallel Processing of Multiple Data Analysis Queries. IPDPS 2003: 81 - [c25]Henrique Andrade, Suresh Aryangat, Tahsin M. Kurç, Joel H. Saltz, Alan Sussman:
Efficient Execution of Multi-query Data Analysis Batches Using Compiler Optimization Strategies. LCPC 2003: 509-524 - [c24]Ümit V. Çatalyürek, Mike Gray, Tahsin M. Kurç, Joel H. Saltz, Eric Stahlberg, Renato Ferreira:
A Component-based Implementation of Multiple Sequence Alignment. SAC 2003: 122-126 - [c23]Tahsin M. Kurç, Feng Lee, Gagan Agrawal, Ümit V. Çatalyürek, Renato Ferreira, Joel H. Saltz:
Optimizing Reduction Computations In a Distributed Environment. SC 2003: 9 - 2002
- [j9]Michael D. Beynon, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz:
Optimizing execution of component-based applications using group instances. Future Gener. Comput. Syst. 18(4): 435-448 (2002) - [j8]Michael D. Beynon, Chialin Chang, Ümit V. Çatalyürek, Tahsin M. Kurç, Alan Sussman, Henrique Andrade, Renato Ferreira, Joel H. Saltz:
Processing large-scale multi-dimensional data in parallel and distributed environments. Parallel Comput. 28(5): 827-859 (2002) - [c22]Henrique Andrade, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz:
Multiple Query Optimization for Data Analysis Applications on Clusters of SMPs. CCGRID 2002: 154-162 - [c21]Henrique Andrade, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz:
Scheduling Multiple Data Visualization Query Workloads on a Shared Memory Machine. IPDPS 2002 - [c20]Michael D. Beynon, Tahsin M. Kurç, Ümit V. Çatalyürek, Alan Sussman, Joel H. Saltz:
Efficient Manipulation of Large Datasets on Heterogeneous Storage Systems. IPDPS 2002 - [c19]Ümit V. Çatalyürek, Eric Stahlberg, Renato Ferreira, Tahsin M. Kurç, Joel H. Saltz:
Improving Performance of Multiple Sequence Alignment Analysis in Multi-Client Environments. IPDPS 2002 - [c18]Henrique Andrade, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz:
Active Proxy-G: optimizing the query execution process in the grid. SC 2002: 46:1-46:15 - [c17]Matthew Spencer, Renato Ferreira, Michael D. Beynon, Tahsin M. Kurç, Ümit V. Çatalyürek, Alan Sussman, Joel H. Saltz:
Executing multiple pipelined data analysis operations in the grid. SC 2002: 66:1-66:18 - 2001
- [j7]Tahsin M. Kurç, Ümit V. Çatalyürek, Chialin Chang, Alan Sussman, Joel H. Saltz:
Visualization of Large Data Sets with the Active Data Repository. IEEE Computer Graphics and Applications 21(4): 24-33 (2001) - [j6]Michael D. Beynon, Tahsin M. Kurç, Ümit V. Çatalyürek, Chialin Chang, Alan Sussman, Joel H. Saltz:
Distributed processing of very large datasets with DataCutter. Parallel Comput. 27(11): 1457-1478 (2001) - [c16]Michael D. Beynon, Alan Sussman, Tahsin M. Kurç, Joel H. Saltz:
Optimizing Execution of Component-based Applications using Group Instances. CCGRID 2001: 56-65 - [c15]Michael D. Beynon, Alan Sussman, Ümit V. Çatalyürek, Tahsin M. Kurç, Joel H. Saltz:
Performance Optimization for Data Intensive Grid Applications. Active Middleware Services 2001: 97-105 - [c14]Chialin Chang, Tahsin M. Kurç, Alan Sussman, Ümit V. Çatalyürek, Joel H. Saltz:
A Hypergraph-Based Workload Partitioning Strategy for Parallel Data Aggregation. PP 2001 - [c13]Henrique Andrade, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz:
Efficient execution of multiple query workloads in data analysis applications. SC 2001: 53 - 2000
- [j5]Tahsin M. Kurç, Mustafa Uysal, Hyeonsang Eom, Jeffrey K. Hollingsworth, Joel H. Saltz, Alan Sussman:
Efficient Performance Prediction for Large-Scale, Data-Intensive Applications. Int. J. High Perform. Comput. Appl. 14(3): 216-227 (2000) - [j4]Hüuseyin Kutluca, Tahsin M. Kurç, Cevdet Aykanat:
Image-Space Decomposition Algorithms for Sort-First Parallel Volume Rendering of Unstructured Grids. J. Supercomput. 15(1): 51-93 (2000) - [c12]Michael D. Beynon, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz:
Design of a Framework for Data-Intensive Wide-Area Applications. Heterogeneous Computing Workshop 2000: 116-130 - [c11]Chialin Chang, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz:
Optimizing Retrieval and Processing of Multi-Dimensional Scientific Datasets. IPDPS 2000: 405-410 - [c10]Michael D. Beynon, Renato Ferreira, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz:
DataCutter: Middleware for Filtering Very Large Scientific Datasets on Archival Storage Systems. IEEE Symposium on Mass Storage Systems 2000: 119-134
1990 – 1999
- 1999
- [j3]Renato Ferreira, Tahsin M. Kurç, Michael D. Beynon, Chialin Chang, Alan Sussman, Joel H. Saltz:
Object-Relational Queries into Multidimensional Databases with the Active Data Repository. Parallel Process. Lett. 9(2): 173-195 (1999) - [c9]Tahsin M. Kurç, Michael D. Beynon, Chialin Chang, Renato Ferreira, Ben Bederson, Joel H. Saltz, Alan Sussman:
A High-Performance Database System for Managing Large Multi-resolution Medical Images. AMIA 1999 - [c8]Tahsin M. Kurç, Alan Sussman, Joel H. Saltz:
Coupling Multiple Simulations via a High Performance Customizable Database System. PP 1999 - [c7]Tahsin M. Kurç, Chialin Chang, Renato Ferreira, Alan Sussman, Joel H. Saltz:
Querying Very Large Multi-dimensional Datasets in ADR. SC 1999: 12 - 1998
- [j2]Tahsin M. Kurç, Cevdet Aykanat, Bülent Özgüç:
Object-space parallel polygon rendering on hypercubes. Comput. Graph. 22(4): 487-503 (1998) - [c6]Mustafa Uysal, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz:
A Performance Prediction Framework for Data Intensive Applications on Large Scale Parallel Machines. LCR 1998: 243-258 - 1997
- [b1]Tahsin M. Kurç:
Pararllel rendering algorithms for distributed-memory multicomputers (Çok işlemcili dağıtık hafızalı bilgisayarlarda paralel görüntüleme algoritmaları). İhsan Doğramacı Bilkent University, Turkey, 1997 - [j1]Tahsin M. Kurç, Cevdet Aykanat, Bülent Özgüç:
A parallel scaled conjugate-gradient algorithm for the solution phase of gathering radiosity on hypercubes. Vis. Comput. 13(1): 1-19 (1997) - [c5]Tahsin M. Kurç, Hüuseyin Kutluca, Cevdet Aykanat, Bülent Özgüç:
A Comparison of Spatial Subdivision Algorithms for Sort-First Rendering. HPCN Europe 1997: 137-146 - 1996
- [c4]Tahsin M. Kurç, Cevdet Aykanat, Bülent Özgüç:
Active Pixel Merging on Hypercube Multicomputers. HPCN Europe 1996: 319-326 - 1995
- [c3]Egemen Tanin, Tahsin M. Kurç, Cevdet Aykanat, Bülent Özgüç:
Comparison of Two Image-Space Subdivision Algorithms for Direct Volume Rendering on Distributed-Memory Multicomputers. PARA 1995: 503-512 - 1991
- [c2]Tahsin M. Kurç, Cevdet Aykanat, Fikret Erçal:
Parallelization of Lee's Routing Algorithm on a Hypercube Multicomputer. EDMCC 1991: 244-253 - [c1]Cevdet Aykanat, Tahsin M. Kurç:
Efficient Parallel Maze Routing Algorithms on a Hypercube Multicomputer. ICPP (3) 1991: 224-227
Coauthor Index
[j39] [j33] [c82] [j31] [j26] [c80] [c79] [c78] [c76] [c75] [c72] [c71] [c70] [c69] [c68] [c67] [c66] [j19] [j18] [j17] [c61] [c60] [c59] [c57] [c56] [c55] [c52] [c50] [j16] [j15] [j14] [j13] [c49] [c48] [c47] [c46] [c45] [c42] [c41] [c40] [c39] [c38] [c37] [c36] [c35] [c34] [j11] [j10] [c32] [c30] [c29] [c27] [c24] [c23] [j8] [c20] [c19] [c17] [j7] [j6] [c15] [c14]
Rajarsi Gupta 0001
aka: Rajarsi R. Gupta
aka: Rajarsi R. Gupta
Tony Pan
aka: Tony C. Pan
aka: Tony C. Pan
P. Sadayappan
aka: Ponnuswamy Sadayappan
aka: Ponnuswamy Sadayappan
[c145] [c144] [j66] [j65] [c143] [c142] [i30] [i29] [i28] [j64] [j63] [c141] [i27] [i26] [i24] [i23] [i22] [j62] [c140] [c139] [c138] [c137] [c134] [i20] [j61] [j58] [c133] [c132] [i19] [j57] [j55] [j54] [c131] [c130] [c129] [c127] [i17] [i16] [i15] [i14] [j53] [c126] [i13] [i12] [j51] [c124] [c123] [c122] [c119] [c117] [c116] [i11] [i10] [c115] [c114] [c113] [c111] [c110] [i9] [i8] [i7] [j50] [c109] [c108] [c107] [c106] [i6] [i5] [j49] [j48] [c105] [c104] [i4] [j47] [j46] [j45] [j44] [j43] [c103] [c102] [c101] [c100] [i3] [j42] [j41] [c99] [c98] [c97] [c96] [i2] [i1] [j40] [j39] [j38] [c95] [c94] [c93] [c92] [c91] [c90] [j37] [j36] [c88] [c87] [j35] [j34] [j33] [c85] [c84] [c83] [c82] [j32] [j31] [j30] [j29] [j28] [j27] [j26] [c81] [c80] [c79] [c78] [c77] [c76] [c75] [j25] [j24] [j23] [j21] [c74] [c73] [c72] [c71] [c70] [c69] [c68] [c67] [c66] [c65] [c64] [j20] [j19] [j18] [j17] [c63] [c61] [c60] [c59] [c58] [c57] [c56] [c55] [c54] [c53] [c52] [c51] [c50] [j16] [j15] [j14] [j13] [c49] [c48] [c47] [c46] [c45] [c44] [c43] [c42] [c41] [j12] [c40] [c39] [c38] [c37] [c36] [c35] [c34] [c33] [j11] [j10] [c32] [c31] [c30] [c29] [c28] [c27] [c26] [c25] [c24] [c23] [j9] [j8] [c22] [c21] [c20] [c19] [c18] [c17] [j7] [j6] [c16] [c15] [c14] [c13] [j5] [c12] [c11] [c10] [j3] [c9] [c8] [c7] [c6]
Nagavijayalakshmi Vydyanathan
aka: Naga Vydyanathan
aka: Naga Vydyanathan
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