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Journal Articles
- 2024
[j47]James R. Jones, Daniel Gottlieb, Andrew J. McMurry, Ashish Atreja, Pankaja M. Desai
, Brian E. Dixon, Philip R. O. Payne, Anil J. Saldanha, Prabhu R. V. Shankar, Yauheni Solad, Adam B. Wilcox, Momeena S. Ali, Eugene Kang, Andrew M. Martin, Elizabeth Sprouse, David E. Taylor, Michael Terry, Vladimir Ignatov, Kenneth D. Mandl:
Real world performance of the 21st Century Cures Act population-level application programming interface. J. Am. Medical Informatics Assoc. 31(5): 1144-1150 (2024)- [j46]Andrew J. McMurry, Daniel Gottlieb, Timothy A. Miller, James R. Jones, Ashish Atreja, Jennifer Crago, Pankaja M. Desai, Brian E. Dixon, Matthew Garber, Vladimir Ignatov, Lyndsey A Kirchner, Philip R. O. Payne, Anil J. Saldanha, Prabhu R. V. Shankar, Yauheni Solad, Elizabeth Sprouse, Michael Terry, Adam B. Wilcox, Kenneth D. Mandl:
Cumulus: a federated electronic health record-based learning system powered by Fast Healthcare Interoperability Resources and artificial intelligence. J. Am. Medical Informatics Assoc. 31(8): 1638-1647 (2024) - [j45]Jiarui Feng, S. Peter Goedegebuure, Amanda Zeng, Ye Bi, Ting Wang, Philip R. O. Payne, Li Ding, David DeNardo, William Hawkins, Ryan C. Fields, Fuhai Li:
sc2MeNetDrug: A computational tool to uncover inter-cell signaling targets and identify relevant drugs based on single cell RNA-seq data. PLoS Comput. Biol. 20(1) (2024) - 2023
- [j44]Bing Xue, Neel Shah, Hanqing Yang, Thomas George Kannampallil, Philip Richard Orrin Payne, Chenyang Lu, Ahmed Sameh Said:
Multi-horizon predictive models for guiding extracorporeal resource allocation in critically ill COVID-19 patients. J. Am. Medical Informatics Assoc. 30(4): 656-667 (2023) - [j43]Abigail E. Lewis, Nicole Gray Weiskopf, Zachary B. Abrams, Randi E. Foraker, Albert M. Lai, Philip R. O. Payne, Aditi Gupta:
Electronic health record data quality assessment and tools: a systematic review. J. Am. Medical Informatics Assoc. 30(10): 1730-1740 (2023) - 2022
- [j42]Sean C. Yu, Aditi Gupta, Kevin D. Betthauser, Patrick G. Lyons, Albert M. Lai, Marin Kollef, Philip R. O. Payne, Andrew P. Michelson:
Sepsis Prediction for the General Ward Setting. Frontiers Digit. Health 4: 848599 (2022) - [j41]Sean C. Yu, Mackenzie R. Hofford, Albert M. Lai, Marin Kollef, Philip R. O. Payne, Andrew P. Michelson:
Respiratory support status from EHR data for adult population: classification, heuristics, and usage in predictive modeling. J. Am. Medical Informatics Assoc. 29(5): 813-821 (2022) - [j40]Jason A. Thomas, Randi E. Foraker, Noa Zamstein, Jon D. Morrow, Philip R. O. Payne, Adam B. Wilcox, Melissa A. Haendel, Christopher G. Chute, Kenneth R. Gersing, Anita Walden, Tellen D. Bennett, David A. Eichmann, Justin Guinney, Warren A. Kibbe, Hongfang Liu, Emily R. Pfaff, Peter N. Robinson, Joel H. Saltz, Heidi Spratt, Justin Starren, Christine Suver, Chunlei Wu, Davera Gabriel, Stephanie S. Hong, Kristin Kostka, Harold P. Lehmann, Richard A. Moffitt, Michele Morris, Matvey B. Palchuk, Xiaohan Tanner Zhang, Richard L. Zhu, Benjamin R. C. Amor, Mark M. Bissell, Marshall Clark, Andrew T. Girvin, Adam M. Lee, Robert T. Miller, Kellie M. Walters, Yooree Chae, Connor Cook, Alexandra Dest, Racquel R. Dietz, Thomas Dillon, Patricia A. Francis, Rafael Fuentes, Alexis Graves, Andrew J. Neumann, Shawn T. O'Neil, Usman Sheikh, Andréa M. Volz, Elizabeth Zampino, Christopher P. Austin, Samuel Bozzette, Mariam Deacy, Nicole Garbarini, Michael G. Kurilla, Sam G. Michael, Joni L. Rutter, Meredith Temple-O'Connor, Katie Rebecca Bradwell, Amin Manna, Nabeel Qureshi, Mary Morrison Saltz, Julie A. McMurry, Carolyn T. Bramante, Jeremy Richard Harper, Wenndy Hernandez, Farrukh M. Koraishy, Federico Mariona, Saidulu Mattapally, Amit Saha, Satyanarayana Vedula, Yujuan Fu, Nisha Mathews, Ofer Mendelevitch:
Demonstrating an approach for evaluating synthetic geospatial and temporal epidemiologic data utility: results from analyzing >1.8 million SARS-CoV-2 tests in the United States National COVID Cohort Collaborative (N3C). J. Am. Medical Informatics Assoc. 29(8): 1350-1365 (2022) - 2021
- [j39]Zachary B. Abrams, Dwayne G. Tally, Lin Zhang, Caitlin E. Coombes, Philip R. O. Payne, Lynne V. Abruzzo, Kevin R. Coombes:
Pattern recognition in lymphoid malignancies using CytoGPS and Mercator. BMC Bioinform. 22(1): 100 (2021) - [j38]Subha Madhavan, Lisa Bastarache, Jeffrey S. Brown, Atul J. Butte, David A. Dorr, Peter J. Embí, Charles P. Friedman, Kevin B. Johnson, Jason H. Moore, Isaac S. Kohane, Philip R. O. Payne, Jessica D. Tenenbaum, Mark G. Weiner, Adam B. Wilcox, Lucila Ohno-Machado:
Use of electronic health records to support a public health response to the COVID-19 pandemic in the United States: a perspective from 15 academic medical centers. J. Am. Medical Informatics Assoc. 28(2): 393-401 (2021) - [j37]Melissa A. Haendel, Christopher G. Chute, Tellen D. Bennett, David A. Eichmann, Justin Guinney, Warren A. Kibbe, Philip R. O. Payne, Emily R. Pfaff, Peter N. Robinson, Joel H. Saltz, Heidi Spratt, Christine Suver, John Wilbanks, Adam B. Wilcox, Andrew E. Williams, Chunlei Wu, Clair Blacketer, Robert L. Bradford, James J. Cimino, Marshall Clark, Evan W. Colmenares, Patricia A. Francis, Davera Gabriel, Alexis Graves, Raju Hemadri, Stephanie S. Hong, George Hripcsak, Dazhi Jiao, Jeffrey G. Klann, Kristin Kostka, Adam M. Lee, Harold P. Lehmann, Lora Lingrey, Robert T. Miller, Michele Morris, Shawn N. Murphy, Karthik Natarajan, Matvey B. Palchuk, Usman Sheikh, Harold Solbrig, Shyam Visweswaran, Anita Walden, Kellie M. Walters, Griffin M. Weber, Xiaohan Tanner Zhang, Richard L. Zhu, Benjamin R. C. Amor, Andrew T. Girvin, Amin Manna, Nabeel Qureshi, Michael G. Kurilla, Sam G. Michael, Lili M. Portilla, Joni L. Rutter, Christopher P. Austin, Ken R. Gersing:
The National COVID Cohort Collaborative (N3C): Rationale, design, infrastructure, and deployment. J. Am. Medical Informatics Assoc. 28(3): 427-443 (2021) - [j36]Curtis L. Cole, Soumitra Sengupta, Sarah Collins Rossetti, David K. Vawdrey, Michael Halaas, Thomas M. Maddox, Geoff Gordon, Trushna Dave, Philip R. O. Payne, Andrew E. Williams, Deborah Estrin:
Ten principles for data sharing and commercialization. J. Am. Medical Informatics Assoc. 28(3): 646-649 (2021) - [j35]Justin B. Starren, William M. Tierney, Marc S. Williams, Paul C. Tang, Charlene R. Weir, Ross Koppel, Philip R. O. Payne, George Hripcsak, Don E. Detmer:
A retrospective look at the predictions and recommendations from the 2009 AMIA policy meeting: did we see EHR-related clinician burnout coming? J. Am. Medical Informatics Assoc. 28(5): 948-954 (2021) - [j34]Thomas George Kannampallil, Joanna Abraham, Sunny S. Lou, Philip R. O. Payne:
Conceptual considerations for using EHR-based activity logs to measure clinician burnout and its effects. J. Am. Medical Informatics Assoc. 28(5): 1032-1037 (2021) - [j33]Fuhai Li, Andrew P. Michelson, Randi E. Foraker, Ming Zhan, Philip R. O. Payne:
Computational analysis to repurpose drugs for COVID-19 based on transcriptional response of host cells to SARS-CoV-2. BMC Medical Informatics Decis. Mak. 21(1): 15 (2021) - 2020
- [j32]Fahd A. Ahmad, Philip R. O. Payne, Ian Lackey, Rachel Komeshak, Kenneth Kenney, Brianna Magnusen, Christopher Metts, Thomas Bailey:
Using REDCap and Apple ResearchKit to integrate patient questionnaires and clinical decision support into the electronic health record to improve sexually transmitted infection testing in the emergency department. J. Am. Medical Informatics Assoc. 27(2): 265-273 (2020) - [j31]Philip R. O. Payne, Don E. Detmer:
Language matters: precision health as a cross-cutting care, research and policy agenda. J. Am. Medical Informatics Assoc. 27(4): 658-661 (2020) - [j30]Thomas George Kannampallil, Randi E. Foraker, Albert M. Lai, Keith F. Woeltje, Philip R. O. Payne:
When past is not a prologue: Adapting informatics practice during a pandemic. J. Am. Medical Informatics Assoc. 27(7): 1142-1146 (2020) - [j29]Thomas George Kannampallil, Joshua M. Smyth, Steve Jones, Philip R. O. Payne, Jun Ma:
Cognitive plausibility in voice-based AI health counselors. npj Digit. Medicine 3 (2020) - 2019
- [j28]Zachary B. Abrams, Lin Zhang, Lynne V. Abruzzo, Nyla A. Heerema, Suli Li, Tom Dillon, Ricky Rodriguez, Kevin R. Coombes, Philip R. O. Payne:
CytoGPS: a web-enabled karyotype analysis tool for cytogenetics. Bioinform. 35(24): 5365-5366 (2019) - [j27]Zachary B. Abrams, Travis S. Johnson, Kun Huang, Philip R. O. Payne, Kevin R. Coombes:
A protocol to evaluate RNA sequencing normalization methods. BMC Bioinform. 20-S(24): 679 (2019) - 2017
- [j26]Haoyang Wu, Elise Miller, Denethi Wijegunawardana, Kelly Regan, Philip R. O. Payne, Fuhai Li:
MD-Miner: a network-based approach for personalized drug repositioning. BMC Syst. Biol. 11(S-5): 86:1-86:8 (2017) - 2016
- [j25]Soheil Moosavinasab, Jeremy Patterson, Robert Strouse, Majid Rastegar-Mojarad, Kelly Regan, Philip R. O. Payne, Yungui Huang, Simon M. Lin:
'RE: fine drugs': an interactive dashboard to access drug repurposing opportunities. Database J. Biol. Databases Curation 2016 (2016) - [j24]Caryn Roth, Philip R. O. Payne, Rory C. Weier, Abigail B. Shoben, Erica N. Fletcher, Albert M. Lai, Marjorie M. Kelley, Jesse J. Plascak, Randi E. Foraker:
The geographic distribution of cardiovascular health in the stroke prevention in healthcare delivery environments (SPHERE) study. J. Biomed. Informatics 60: 95-103 (2016) - [j23]Philip R. O. Payne, Yves A. Lussier, Randi E. Foraker, Peter J. Embí:
Rethinking the role and impact of health information technology: informatics as an interventional discipline. BMC Medical Informatics Decis. Mak. 16: 40 (2016) - 2014
- [j22]Marcelo A. Lopetegui, Po-Yin Yen, Albert M. Lai, Joseph Jeffries, Peter J. Embí, Philip R. O. Payne:
Time motion studies in healthcare: What are we talking about? J. Biomed. Informatics 49: 292-299 (2014) - [j21]Peter J. Embí, Philip R. O. Payne:
Advancing methodologies in Clinical Research Informatics (CRI): Foundational work for a maturing field. J. Biomed. Informatics 52: 1-3 (2014) - [j20]Caryn Roth, Randi E. Foraker, Philip R. O. Payne, Peter J. Embí:
Community-level determinants of obesity: harnessing the power of electronic health records for retrospective data analysis. BMC Medical Informatics Decis. Mak. 14: 36 (2014) - 2013
- [j19]Philip R. O. Payne, Taylor R. Pressler, Indra Neil Sarkar, Yves A. Lussier:
People, organizational, and leadership factors impacting informatics support for clinical and translational research. BMC Medical Informatics Decis. Mak. 13: 20 (2013) - 2012
- [j18]Philip R. O. Payne, Rebecca D. Jackson, Thomas M. Best, Tara Borlawsky, Albert M. Lai, Stephen L. James, Metin N. Gurcan:
Applying knowledge-anchored hypothesis discovery methods to advance clinical and translational research: the OAMiner project. J. Am. Medical Informatics Assoc. 19(6): 1110-1114 (2012) - [j17]Yang Xiang, Kewei Lu, Stephen L. James, Tara Borlawsky, Kun Huang, Philip R. O. Payne:
k-Neighborhood decentralization: A comprehensive solution to index the UMLS for large scale knowledge discovery. J. Biomed. Informatics 45(2): 323-336 (2012) - [j16]Taylor R. Pressler, Po-Yin Yen, Jing Ding, Jianhua Liu, Peter J. Embí, Philip R. O. Payne:
Computational challenges and human factors influencing the design and use of clinical research participant eligibility pre-screening tools. BMC Medical Informatics Decis. Mak. 12: 47 (2012) - [j15]Philip R. O. Payne:
Chapter 1: Biomedical Knowledge Integration. PLoS Comput. Biol. 8(12) (2012) - [j14]Yang Xiang, Philip R. O. Payne, Kun Huang:
Transactional Database Transformation and Its Application in Prioritizing Human Disease Genes. IEEE ACM Trans. Comput. Biol. Bioinform. 9(1): 294-304 (2012) - 2011
- [j13]Philip R. O. Payne, Tara Borlawsky, Omkar Lele, Stephen L. James, Andrew W. Greaves:
The TOKEn project: knowledge synthesis for in silico science. J. Am. Medical Informatics Assoc. 18(Supplement): 125-131 (2011) - [j12]Indra Neil Sarkar, Philip R. O. Payne:
The joint summits on translational science: Crossing the translational chasm. J. Biomed. Informatics 44(Supplement-1): S1-S2 (2011) - [j11]Philip R. O. Payne, Peter J. Embí, Michael G. Kahn:
Selected Papers from the 2011 Summit on Clinical Research Informatics. J. Biomed. Informatics 44(Supplement-1): S54-S55 (2011) - [j10]Tara Borlawsky, Omkar Lele, Philip R. O. Payne:
Research-IQ: Development and evaluation of an ontology-anchored integrative query tool. J. Biomed. Informatics 44(Supplement-1): S56-S62 (2011) - 2010
- [j9]Philip R. O. Payne, Kun Huang, Kristin Keen-Circle, Abhisek Kundu, Jie Zhang, Tara Borlawsky:
Multi-dimensional discovery of biomarker and phenotype complexes. BMC Bioinform. 11(S-9): S3 (2010) - [j8]Jie Zhang, Yang Xiang, Liya Ding, Kristin Keen-Circle, Tara Borlawsky, Hatice Gulcin Ozer, Ruoming Jin, Philip R. O. Payne, Kun Huang:
Using gene co-expression network analysis to predict biomarkers for chronic lymphocytic leukemia. BMC Bioinform. 11(S-9): S5 (2010) - [j7]Philip R. O. Payne, Peter J. Embí, Joyce C. Niland:
Foundational biomedical informatics research in the clinical and translational science era: a call to action. J. Am. Medical Informatics Assoc. 17(6): 615-616 (2010) - 2009
- [j6]Peter J. Embí, Philip R. O. Payne:
Research Paper: Clinical Research Informatics: Challenges, Opportunities and Definition for an Emerging Domain. J. Am. Medical Informatics Assoc. 16(3): 316-327 (2009) - [j5]Selnur Erdal, Ümit V. Çatalyürek, Philip R. O. Payne, Joel H. Saltz, Jyoti Kamal, Metin N. Gurcan:
A Knowledge-Anchored Integrative Image Search and Retrieval System. J. Digit. Imaging 22(2): 166-182 (2009) - 2008
- [j4]Joel H. Saltz, Tahsin M. Kurç, Shannon Hastings, Stephen Langella, Scott Oster, David Ervin, Ashish Sharma, Tony Pan, Metin N. Gurcan, Justin Permar, Renato Ferreira, Philip R. O. Payne, Ümit V. Çatalyürek, Enrico Caserta, Gustavo Leone, Michael C. Ostrowski, Ravi K. Madduri, Ian T. Foster, Subhasree Madhavan, Kenneth H. Buetow, Krishnakant Shanbhag, Eliot L. Siegel:
e-Science, caGrid, and Translational Biomedical Research. Computer 41(11): 58-66 (2008) - 2007
- [j3]Philip R. O. Payne, Eneida A. Mendonça, Stephen B. Johnson, Justin Starren:
Conceptual knowledge acquisition in biomedicine: A methodological review. J. Biomed. Informatics 40(5): 582-602 (2007) - 2006
- [j2]Roswitha Poll, Philip R. O. Payne:
Impact measures for libraries and information services. Libr. Hi Tech 24(4): 547-562 (2006) - 2005
- [j1]Philip R. O. Payne, Justin Starren:
Research Paper: Quantifying Visual Similarity in Clinical Iconic Graphics. J. Am. Medical Informatics Assoc. 12(3): 338-345 (2005)
Conference and Workshop Papers
- 2024
- [c58]Zehao Dong, Muhan Zhang, Philip R. O. Payne, Michael A. Province, Carlos Cruchaga, Tianyu Zhao, Fuhai Li, Yixin Chen:
Rethinking the Power of Graph Canonization in Graph Representation Learning with Stability. ICLR 2024 - [c57]Sayantan Kumar, Philip R. O. Payne, Aristeidis Sotiras:
Improving Normative Modeling for Multi-Modal Neuroimaging Data Using Mixture-of-Product-of-Experts Variational Autoencoders. ISBI 2024: 1-5 - 2023
- [c56]Bing Xue, Ahmed Sameh Said, Ziqi Xu, Hanyang Liu, Neel Shah, Hanqing Yang, Philip R. O. Payne, Chenyang Lu:
Assisting Clinical Decisions for Scarcely Available Treatment via Disentangled Latent Representation. KDD 2023: 5360-5371 - [c55]Sayantan Kumar, Philip R. O. Payne, Aristeidis Sotiras:
Normative modeling using multimodal variational autoencoders to identify abnormal brain volume deviations in Alzheimer's disease. Computer-Aided Diagnosis 2023 - 2022
- [c54]Sunny S. Lou, Seunghwan Kim, Derek Harford, Benjamin C. Warner, Philip R. O. Payne, Joanna Abraham, Thomas George Kannampallil:
Effect of Patient Switching on EHR-based Workload and Wrong-Patient Errors. AMIA 2022 - [c53]Sayantan Kumar, Sean C. Yu, Thomas George Kannampallil, Zachary B. Abrams, Andrew P. Michelson, Philip R. O. Payne:
Self-explaining neural network with concept-based explanations for ICU mortality prediction. BCB 2022: 8:1-8:9 - 2021
- [c52]Atul J. Butte, Christopher A. Longhurst, Amy Abernethy, Gretchen P. Jackson, Philip R. O. Payne:
Use of Healthcare Information Technology and Data Platforms to Inform Pandemic Response: Perspectives at the Intersection of Academic Healthcare Provider Organizations and Industry Partners. AMIA 2021 - [c51]Jessica D. Tenenbaum, Theresa Cullen, Indra Neil Sarkar, Philip R. O. Payne, Brian E. Dixon:
Public Health Informatics in a Global Pandemic: In the COVID response trenches. AMIA 2021 - [c50]Bing Xue, Neel Shah, Hanqing Yang, Charles Ziegenbein, Thomas George Kannampallil, Philip R. O. Payne, Chenyang Lu, Ahmed Sameh Said:
Multi-horizon prediction for extracorporeal support in COVID-19 patients. AMIA 2021 - [c49]Xu Teng, Adam Corpstein, Joel Holm, Willis Knox, Becker Mathie, Philip R. O. Payne, Ethan Vander Wiel, Prabin Giri, Goce Trajcevski, Aaron Dotter, Jeff J. Andrews, Scott Coughlin, Ying Qin, Juan Gabriel Serra-Perez, Nam Tran, Jaime Roman-Garja, Konstantinos Kovlakas, Emmanouil Zapartas, Simone Bavera, Devina Misra, Tassos Fragos:
CACSE: Context Aware Clustering of Stellar Evolution. SSTD 2021: 157-160 - 2020
- [c48]Heming Zhang, Jiarui Feng, Amanda Zeng, Philip R. O. Payne, Fuhai Li:
Predicting Tumor Cell Response to Synergistic Drug Combinations Using a Novel Simplified Deep Learning Model. AMIA 2020 - 2019
- [c47]Marcelo A. Lopetegui, Po-Yin Yen, Philip R. O. Payne, Peter J. Embí:
Foundations for Studying Clinical Workflow: Development of a Composite Inter-Observer Reliability Assessment for Workflow Time Studies. AMIA 2019 - [c46]Eric G. Poon, Charles P. Friedman, Philip R. O. Payne, Michael J. Pencina, Kevin B. Johnson:
Informatics-Enabled Learning Health Systems: Strategies for Success from Four Academic Medical Centers. AMIA 2019 - 2018
- [c45]Justin Starren, William R. Hersh, Christopher Longhurst, Philip R. O. Payne:
Panel: Collaborative Science Within Academic Medical Centers: Opportunities and Challenges for Informatics. AMIA 2018 - [c44]Philip R. O. Payne, Erika Sanchez-Velazquez:
Comparison of Electric Wheelchair Control Systems in a Virtual Environment. CEEC 2018: 159-162 - [c43]Jielin Xu, Kelly Regan-Fendt, Siyuan Deng, William E. Carson III, Philip R. O. Payne, Fuhai Li:
Diffusion mapping of drug targets on disease signaling network elements reveals drug combination strategies. PSB 2018: 92-103 - [c42]Philip R. O. Payne, Nigam H. Shah, Jessica D. Tenenbaum, Lara M. Mangravite:
Session introduction. PSB 2018: 240-246 - [c41]William M. Southerland, S. Joshua Swamidass, Philip R. O. Payne, Laura K. Wiley, ClarLynda R. Williams-DeVane:
The diversity and disparity in biomedical informatics (DDBI) workshop. PSB 2018: 614-617 - 2017
- [c40]Philip R. O. Payne, Mark Vance, Peter J. Embí:
A Scalable Approach to Federating Distributed Data: The Avec® Platform. AMIA 2017 - [c39]Kelly Regan, Jihyung Kil, Dongjo Ban, Gregg M. Gascon, Philip R. O. Payne:
Retrospective Analysis of EHR and Administrative Data for Drug Repurposing Hypothesis Evaluation in Melanoma. CRI 2017 - [c38]Philip R. O. Payne, Kun Huang, Nigam H. Shah, Jessica D. Tenenbaum:
Open Data for Discovery Science. PSB 2017: 649-652 - 2016
- [c37]Tasneem Motiwala, Zachary B. Abrams, Kelly Regan, Bobbie Kite, Gregg M. Gascon, Philip R. O. Payne:
Use of Administrative Data to Predict Risk of Liver Disease. CRI 2016 - [c36]Satyajeet Raje, Zachary B. Abrams, Kevin R. Coombes, Philip R. O. Payne:
Using Karyotype Data for Automated Disease Classification: A Proof of Concept Demonstration. CRI 2016 - [c35]Kelly Regan, Zachary B. Abrams, Michael F. Sharpnack, Arunima Srivastava, Kun Huang, Nigam Shah, Philip R. O. Payne:
Session Introduction. PSB 2016: 1-8 - 2015
- [c34]Bobbie Kite, Tasneem Motiwala, Philip R. O. Payne:
Analysis of the Great Divide Between Cardiovascular Risk and Health Scores. AMIA 2015 - [c33]Marcelo A. Lopetegui, Barbara A. Lara, Po-Yin Yen, Ümit V. Çatalyürek, Philip R. O. Payne:
A Novel Multiple Choice Question Generation Strategy: Alternative Uses for Controlled Vocabulary Thesauri in Biomedical-Sciences Education. AMIA 2015 - [c32]Tasneem Motiwala, Chaitanya P. Shivade, Satyajeet Raje, Albert M. Lai, Philip R. O. Payne:
RECRUIT: Roadmap to Enhance Clinical trial Recruitment Using Information Technology. AMIA 2015 - [c31]Tasneem Motiwala, Bobbie Kite, Kelly Regan, Gregg M. Gascon, Philip R. O. Payne:
Domain Analysis of Integrated Data to Reduce Cost Associated with Liver Disease. MedInfo 2015: 414-418 - [c30]Kelly Regan, Satyajeet Raje, Cartik Saravanamuthu, Philip R. O. Payne:
Conceptual Knowledge Discovery in Databases for Drug Combinations Predictions in Malignant Melanoma. MedInfo 2015: 663-667 - [c29]Zachary B. Abrams, Andrea L. Peabody, Nyla A. Heerema, Philip R. O. Payne:
Text Mining and Data Modeling of Karyotypes to aid in Drug Repurposing Efforts. MedInfo 2015: 1037 - [c28]Cartik R. Kothari, Philip R. O. Payne:
A Metadata based Knowledge Discovery Methodology for Seeding Translational Research. MedInfo 2015: 1071 - [c27]Satyajeet Raje, Bobbie Kite, Jay Ramanathan, Philip R. O. Payne:
Real-time Data Fusion Platforms: The Need of Multi-dimensional Data-driven Research in Biomedical Informatics. MedInfo 2015: 1107 - 2014
- [c26]Caryn Roth, Randi E. Foraker, Marcelo A. Lopetegui, Philip R. O. Payne:
Lessons Learned Bringing Public Health into the Primary Care Clinic through an EHR-based Application. AMIA 2014 - [c25]Chunhua Weng, Philip R. O. Payne, Mark Velez, Stephen B. Johnson, Suzanne Bakken:
Towards Symbiosis in Knowledge Representation and Natural Language Processing for Structuring Clinical Practice Guidelines. Nursing Informatics 2014: 461-469 - 2013
- [c24]Omkar Lele, Puneet Mathur, Sandeep Chatra Raveesh, Satyajeet Raje, Tara Borlawsky, Philip R. O. Payne:
Utilization of Hadoop Framework to Enable Semantic Search over Big Data. AMIA 2013 - [c23]Marcelo A. Lopetegui, Shasha Bai, Po-Yin Yen, Albert M. Lai, Peter J. Embí, Philip R. O. Payne:
Inter-Observer Reliability Assessments in Time Motion Studies: The Foundation for Meaningful Clinical Workflow Analysis. AMIA 2013 - [c22]William Stephens, Tara Borlawsky, Philip R. O. Payne:
Enabling Integrative Auditing and Reporting for the TRITON Platform using Big Data Technologies. AMIA 2013 - [c21]Mark G. Weiner, Philip R. O. Payne, Peter J. Embí, Shawn N. Murphy:
Research Informatics : Re-engineering the Research Enterprise. AMIA 2013 - [c20]Marcelo A. Lopetegui, Po-Yin Yen, Albert M. Lai, Peter J. Embí, Philip R. O. Payne:
TimeCaT: a Comprehensive Tool for Time Motion Studies. MedInfo 2013: 1266 - 2012
- [c19]Courtney Hebert, Jared Wasserman, Randi E. Foraker, Stanley Lemeshow, Hagop S. Mekhjian, Philip R. O. Payne, Peter J. Embí:
Development of an Informatics-Based Predictive Model for 30-Day Readmission Customized for a Single Hospital System. AMIA 2012 - [c18]Omkar Lele, Satyajeet Raje, Po-Yin Yen, Tara Borlawsky, Philip R. O. Payne:
ResearchIQ: An Ontology-anchored Knowledge and Resource Discovery Tool. AMIA 2012 - [c17]Marcelo A. Lopetegui, Po-Yin Yen, Albert M. Lai, Peter J. Embí, Philip R. O. Payne:
Time Capture Tool (TimeCaT): Development of a Comprehensive Application to Support Data Capture for Time Motion Studies. AMIA 2012 - [c16]Philip R. O. Payne, Arka Pattanayak, Shubhanan Deshpande, David Ervin:
CohortIQ: An Integrative Bio-specimen Discovery and Annotation Portal. AMIA 2012 - 2009
- [c15]Abhisek Kundu, Hatice Gulcin Ozer, Tara Borlawsky, Kristin C. Circle, Kun Huang, Philip R. O. Payne:
Clinical Attribute Network for Chronic Lymphocytic Leukemia. BIBM 2009: 279-282 - 2008
- [c14]Philip R. O. Payne, Tara Borlawsky, Alan Kwok, Andrew W. Greaves:
Supporting the Design of Translational Clinical Studies through the Generation and Verification of Conceptual Knowledge-anchored Hypotheses. AMIA 2008 - [c13]Joel H. Saltz, Shannon Hastings, Stephen Langella, Scott Oster, Tahsin M. Kurç, Philip R. O. Payne, Renato Ferreira, Beth Plale, Carole A. Goble, David Ervin, Ashish Sharma, Tony Pan, Justin Permar, Peter Brezany, Frank Siebenlist, Ravi K. Madduri, Ian T. Foster, Krishnakant Shanbhag, Charlie Mead, Neil P. Chue Hong:
A Roadmap for caGrid, an Enterprise Grid Architecture for Biomedical Research. HealthGrid 2008: 224-237 - 2007
- [c12]Peter J. Embí, Philip R. O. Payne, Stanley E. Kaufman, Judith R. Logan, Charles E. Barr:
Identifying Challenges and Opportunities in Clinical Research Informatics: Analysis of a Facilitated Discussion at the 2006 AMIA Annual Symposium. AMIA 2007 - [c11]Philip R. O. Payne, Eneida A. Mendonça, Justin B. Starren:
Modeling Participant-Related Clinical Research Events Using Conceptual Knowledge Acquisition Techniques. AMIA 2007 - [c10]Sharib A. Khan, Rita Kukafka, Philip R. O. Payne, J. Thomas Bigger, Stephen B. Johnson:
A Day in the Life of a Clinical Research Coordinator: Observations from Community Practice Settings. MedInfo 2007: 247-251 - 2006
- [c9]Amy E. Chused, Philip R. O. Payne, Justin B. Starren:
Novel Techniques for Survey and Classification Studies to Improve Patient Centered Websites. AMIA 2006 - [c8]James R. Deitzer, Philip R. O. Payne, Justin B. Starren:
Coverage of Clinical Trials Tasks in Existing Ontologies. AMIA 2006 - [c7]Sharib A. Khan, Philip R. O. Payne, Stephen B. Johnson, J. Thomas Bigger, Rita Kukafka:
Modeling Clinical Trials Workflow in Community Practice Settings. AMIA 2006 - [c6]Philip R. O. Payne, James R. Deitzer, Eneida A. Mendonça, Justin B. Starren:
Consensus-based Construction of a Taxonomy of Clinical Trial Tasks. AMIA 2006 - [c5]Justin B. Starren, Philip R. O. Payne, David R. Kaufman:
Human Computer Interaction Issues in Clinical Trials Management Systems. AMIA 2006 - [c4]Philip R. O. Payne, Justin Starren:
Presentation discovery: building a better icon. CHI Extended Abstracts 2006: 1223-1228 - 2003
- [c3]Andrew W. Greaves, Philip R. O. Payne, Laura Rassenti, Thomas J. Kipps:
CRC Tissue Core Management System (TCMS): Integration of Basic Science and Clinical Data for Translational Research. AMIA 2003 - [c2]Philip R. O. Payne, Andrew W. Greaves, Thomas J. Kipps:
CRC Clinical Trials Management System (CTMS): An Integrated Information Management Solution for Collaborative Clinical Research. AMIA 2003 - [c1]Justin B. Starren, Philip R. O. Payne:
Quantifying Visual Similarity in Clinical Iconic Graphics. AMIA 2003
Informal and Other Publications
- 2024
- [i10]Zehao Dong, Qihang Zhao, Philip R. O. Payne, Michael A. Province, Carlos Cruchaga, Muhan Zhang, Tianyu Zhao, Yixin Chen, Fuhai Li:
Highly Accurate Disease Diagnosis and Highly Reproducible Biomarker Identification with PathFormer. CoRR abs/2402.07268 (2024) - [i9]Sayantan Kumar, Sean C. Yu, Andrew P. Michelson, Thomas George Kannampallil, Philip R. O. Payne:
HiMAL: A Multimodal Hierarchical Multi-task Auxiliary Learning framework for predicting and explaining Alzheimer disease progression. CoRR abs/2404.03208 (2024) - [i8]Sayantan Kumar, Thomas Earnest, Braden Yang, Deydeep Kothapalli, Tammie L. S. Benzinger, Brian A. Gordon, Philip R. O. Payne, Aristeidis Sotiras:
Analysing heterogeneity in Alzheimer Disease using multimodal normative modelling on ATN biomarkers. CoRR abs/2404.05748 (2024) - 2023
- [i7]Bing Xue, Ahmed Sameh Said, Ziqi Xu, Hanyang Liu, Neel Shah, Hanqing Yang, Philip R. O. Payne, Chenyang Lu:
Assisting Clinical Decisions for Scarcely Available Treatment via Disentangled Latent Representation. CoRR abs/2307.03315 (2023) - [i6]Zehao Dong, Muhan Zhang, Qihang Zhao, Philip R. O. Payne, Michael A. Province, Carlos Cruchaga, Tianyu Zhao, Yixin Chen, Fuhai Li:
Universal Normalization Enhanced Graph Representation Learning for Gene Network Prediction. CoRR abs/2309.00738 (2023) - [i5]Sayantan Kumar, Philip R. O. Payne, Aristeidis Sotiras:
Improving Normative Modeling for Multi-modal Neuroimaging Data using mixture-of-product-of-experts variational autoencoders. CoRR abs/2312.00992 (2023) - 2022
- [i4]Zehao Dong, Yixin Chen, Philip R. O. Payne, Fuhai Li:
Interpreting mechanism of Synergism of drug combinations using attention based hierarchical graph pooling. CoRR abs/2209.09245 (2022) - 2021
- [i3]Sayantan Kumar, Inez Y. Oh, Suzanne E. Schindler, Albert M. Lai, Philip R. O. Payne, Aditi Gupta:
Machine learning for modeling the progression of Alzheimer disease dementia using clinical data: a systematic literature review. CoRR abs/2108.04174 (2021) - [i2]Sayantan Kumar, Sean C. Yu, Andrew P. Michelson, Philip R. O. Payne:
Self-explaining Neural Network with Plausible Explanations. CoRR abs/2110.04598 (2021) - 2018
- [i1]Tianyu Zhang, Liwei Zhang, Philip R. O. Payne, Fuhai Li:
Synergistic Drug Combination Prediction by Integrating Multi-omics Data in Deep Learning Models. CoRR abs/1811.07054 (2018)
Coauthor Index
Justin Starren
aka: Justin B. Starren
aka: Justin B. Starren
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