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ORCIDZachary B. Abrams
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2020 – today
- 2024
[c9]Kriti Bhattarai, Inez Y. Oh, Zachary B. Abrams, Albert M. Lai:
Document-level Clinical Entity and Relation extraction via Knowledge Base-Guided Generation. BioNLP@ACL 2024: 318-327- [i2]Kriti Bhattarai, Inez Y. Oh, Zachary B. Abrams, Albert M. Lai:
Document-level Clinical Entity and Relation Extraction via Knowledge Base-Guided Generation. CoRR abs/2407.10021 (2024) - 2023
- [j12]Abigail E. Lewis
, Nicole Gray Weiskopf, Zachary B. Abrams, Randi E. Foraker, Albert M. Lai, Philip R. O. Payne, Aditi Gupta:
Electronic health record data quality assessment and tools: a systematic review. J. Am. Medical Informatics Assoc. 30(10): 1730-1740 (2023) - 2022
- [c8]Sayantan Kumar, Sean C. Yu, Thomas George Kannampallil, Zachary B. Abrams, Andrew P. Michelson, Philip R. O. Payne:
Self-explaining neural network with concept-based explanations for ICU mortality prediction. BCB 2022: 8:1-8:9 - 2021
- [j11]Zachary B. Abrams, Caitlin E. Coombes, Suli Li, Kevin R. Coombes:
Mercator: a pipeline for multi-method, unsupervised visualization and distance generation. Bioinform. 37(17): 2780-2781 (2021) - [j10]Zachary B. Abrams, Dwayne G. Tally, Lynne V. Abruzzo, Kevin R. Coombes:
RCytoGPS: an R package for reading and visualizing cytogenetics data. Bioinform. 37(23): 4589-4590 (2021) - [j9]Zachary B. Abrams, Dwayne G. Tally, Lin Zhang, Caitlin E. Coombes, Philip R. O. Payne, Lynne V. Abruzzo, Kevin R. Coombes:
Pattern recognition in lymphoid malignancies using CytoGPS and Mercator. BMC Bioinform. 22(1): 100 (2021) - [j8]Caitlin E. Coombes, Xin Liu, Zachary B. Abrams, Kevin R. Coombes, Guy N. Brock:
Simulation-derived best practices for clustering clinical data. J. Biomed. Informatics 118: 103788 (2021) - 2020
- [j7]Caitlin E. Coombes, Zachary B. Abrams, Suli Li, Lynne V. Abruzzo, Kevin R. Coombes:
Unsupervised machine learning and prognostic factors of survival in chronic lymphocytic leukemia. J. Am. Medical Informatics Assoc. 27(7): 1019-1027 (2020) - [j6]Amir Asiaee T., Zachary B. Abrams, Samantha Nakayiza, Deepa Sampath, Kevin R. Coombes:
Explaining Gene Expression Using Twenty-One MicroRNAs. J. Comput. Biol. 27(7): 1157-1170 (2020) - [c7]Zachary B. Abrams, Lin Zhang, Ricky Rodriguez, Lynne V. Abruzzo, Kevin R. Coombes, Philip R. P. Payne:
CytoGPS: A Web-Enabled Karyotype Analysis Tool for Cytogeneticists and Biomedical Data Scientists. AMIA 2020 - [i1]Caitlin E. Coombes, Zachary B. Abrams, Samantha Nakayiza, Guy N. Brock, Kevin R. Coombes:
Umpire 2.0: Simulating realistic, mixed-type, clinical data for machine learning. F1000Research 9: 1186 (2020)
2010 – 2019
- 2019
- [j5]Mark R. Zucker, Lynne V. Abruzzo, Carmen D. Herling, Lynn L. Barron, Michael J. Keating, Zachary B. Abrams, Nyla A. Heerema, Kevin R. Coombes:
Inferring clonal heterogeneity in cancer using SNP arrays and whole genome sequencing. Bioinform. 35(17): 2924-2931 (2019) - [j4]Mark R. Zucker, Lynne V. Abruzzo, Carmen D. Herling, Lynn L. Barron, Michael J. Keating, Zachary B. Abrams, Nyla A. Heerema, Kevin R. Coombes:
Inferring clonal heterogeneity in cancer using SNP arrays and whole genome sequencing. Bioinform. 35(17): 3216 (2019) - [j3]Zachary B. Abrams, Lin Zhang, Lynne V. Abruzzo, Nyla A. Heerema, Suli Li, Tom Dillon, Ricky Rodriguez, Kevin R. Coombes, Philip R. O. Payne:
CytoGPS: a web-enabled karyotype analysis tool for cytogenetics. Bioinform. 35(24): 5365-5366 (2019) - [j2]Zachary B. Abrams, Travis S. Johnson, Kun Huang, Philip R. O. Payne, Kevin R. Coombes:
A protocol to evaluate RNA sequencing normalization methods. BMC Bioinform. 20-S(24): 679 (2019) - 2018
- [j1]Min Wang, Zachary B. Abrams, Steven M. Kornblau, Kevin R. Coombes:
Thresher: determining the number of clusters while removing outliers. BMC Bioinform. 19(1): 9:1-9:15 (2018) - 2017
- [c6]Travis S. Johnson, Zachary B. Abrams, Yan Zhang, Kun Huang:
Mapping Neuronal Cell Types Using Integrative Multi-Species Modeling of Human and Mouse Single Cell RNA Sequencing. PSB 2017: 599-610 - 2016
- [c5]Tasneem Motiwala, Zachary B. Abrams, Kelly Regan, Bobbie Kite, Gregg M. Gascon, Philip R. O. Payne:
Use of Administrative Data to Predict Risk of Liver Disease. CRI 2016 - [c4]Satyajeet Raje, Zachary B. Abrams, Kevin R. Coombes, Philip R. O. Payne:
Using Karyotype Data for Automated Disease Classification: A Proof of Concept Demonstration. CRI 2016 - [c3]Kelly Regan, Zachary B. Abrams, Michael F. Sharpnack, Arunima Srivastava, Kun Huang, Nigam Shah, Philip R. O. Payne:
Session Introduction. PSB 2016: 1-8 - 2015
- [c2]Zachary B. Abrams, Satyajeet Raje:
KaryoViz: Designing A Karyotype Visualization Platform for Clinical Decision Support. AMIA 2015 - [c1]Zachary B. Abrams, Andrea L. Peabody, Nyla A. Heerema, Philip R. O. Payne:
Text Mining and Data Modeling of Karyotypes to aid in Drug Repurposing Efforts. MedInfo 2015: 1037
Coauthor Index
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