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2020 – today
- 2024
[j92]Shawn T. O'Neil, Charisse R. Madlock-Brown, Kenneth Wilkins, Brenda M. McGrath, Hannah E. Davis, Gina S. Assaf, Hannah Wei, Parya Zareie, Evan T. French, Johanna Loomba, Julie A. McMurry, Andrea Zhou, Christopher G. Chute, Richard A. Moffitt, Emily R. Pfaff, Yun Jae Yoo, Peter Leese, Robert F. Chew, Michael Lieberman, Melissa A. Haendel:
Finding Long-COVID: temporal topic modeling of electronic health records from the N3C and RECOVER programs. npj Digit. Medicine 7(1) (2024)- [c160]Samson W. Tu
, Ann-Helene Almborg, Andrea Martinuzzi, Vincenzo Della Mea, Kathy L. Giannangelo, Christopher G. Chute, Cassandra Linton, Ronald Cornet, Can Celik, Robert Jakob:
Linking Health Terminologies: A Unified Approach to the WHO Family of International Classifications. MIE 2024: 1333-1337 - 2023
- [j91]Pascal S. Brandt, Abel N. Kho, Yuan Luo, Jennifer A. Pacheco, Theresa L. Walunas, Hakon Hakonarson, George Hripcsak, Cong Liu, Ning Shang, Chunhua Weng, Nephi Walton, David S. Carrell, Paul K. Crane, Eric B. Larson, Christopher G. Chute, Iftikhar J. Kullo, Robert J. Carroll, Joshua C. Denny, Andrea H. Ramirez, Wei-Qi Wei, Jyotishman Pathak, Laura K. Wiley, Rachel L. Richesson, Justin B. Starren, Luke V. Rasmussen:
Characterizing variability of electronic health record-driven phenotype definitions. J. Am. Medical Informatics Assoc. 30(3): 427-437 (2023) - [j90]Peter Leese, Adit Anand, Andrew T. Girvin, Amin Manna, Saaya Patel, Yun Jae Yoo, Rachel Wong, Melissa A. Haendel, Christopher G. Chute, Tellen D. Bennett, Janos G. Hajagos, Emily R. Pfaff, Richard A. Moffitt:
Clinical encounter heterogeneity and methods for resolving in networked EHR data: a study from N3C and RECOVER programs. J. Am. Medical Informatics Assoc. 30(6): 1125-1136 (2023) - [j89]Emily R. Pfaff, Andrew T. Girvin, Miles Crosskey, Srushti Gangireddy, Hiral Master, Wei-Qi Wei, Vern Eric Kerchberger, Mark G. Weiner, Paul A. Harris, Melissa A. Basford, Christopher Lunt, Christopher G. Chute, Richard A. Moffitt, Melissa A. Haendel:
De-black-boxing health AI: demonstrating reproducible machine learning computable phenotypes using the N3C-RECOVER Long COVID model in the All of Us data repository. J. Am. Medical Informatics Assoc. 30(7): 1305-1312 (2023) - [j88]Sijia Liu, Andrew Wen, Liwei Wang, Huan He, Sunyang Fu, Robert T. Miller, Andrew E. Williams, Daniel R. Harris, Ramakanth Kavuluru, Mei Liu, Noor Abu-El-Rub, Dalton Schutte, Rui Zhang, Masoud Rouhizadeh, John D. Osborne, Yongqun He, Umit Topaloglu, Stephanie S. Hong, Joel H. Saltz, Thomas Schaffter, Emily R. Pfaff, Christopher G. Chute, Tim Duong, Melissa A. Haendel, Rafael Fuentes, Peter Szolovits, Hua Xu, Hongfang Liu:
An open natural language processing (NLP) framework for EHR-based clinical research: a case demonstration using the National COVID Cohort Collaborative (N3C). J. Am. Medical Informatics Assoc. 30(12): 2036-2040 (2023) - [c159]Guohui Xiao, Emily R. Pfaff, Eric Prud'hommeaux, David Booth, Deepak K. Sharma, Nan Huo, Yue Yu, Nansu Zong, Kathryn J. Ruddy, Christopher G. Chute, Guoqian Jiang:
FHIR-Ontop-OMOP: Querying OMOP clinical databases as FHIR-compliant Clinical Knowledge Graphs. SWAT4HCLS 2023: 165-166 - 2022
- [j87]Nicolas Matentzoglu, James P. Balhoff, Susan M. Bello, Chris Bizon, Matthew H. Brush, Tiffany J. Callahan, Christopher G. Chute, William D. Duncan, Chris T. A. Evelo, Davera Gabriel, John Graybeal, Alasdair J. G. Gray, Benjamin M. Gyori, Melissa A. Haendel, Henriette Harmse, Nomi L. Harris, Ian Harrow, Harshad Hegde, Amelia L. Hoyt, Charles Tapley Hoyt, Dazhi Jiao, Ernesto Jiménez-Ruiz, Simon Jupp, Hyeongsik Kim, Sebastian Köhler, Thomas Liener, Qinqin Long, James Malone, James A. McLaughlin, Julie A. McMurry, Sierra A. T. Moxon, Monica C. Munoz-Torres, David Osumi-Sutherland, James A. Overton, Bjoern Peters, Tim E. Putman, Núria Queralt-Rosinach, Kent A. Shefchek, Harold Solbrig, Anne E. Thessen, Tania Tudorache, Nicole A. Vasilevsky, Alex H. Wagner, Christopher J. Mungall:
A Simple Standard for Sharing Ontological Mappings (SSSOM). Database J. Biol. Databases Curation 2022(2022) (2022) - [j86]Emily R. Pfaff, Andrew T. Girvin, Davera Gabriel, Kristin Kostka, Michele Morris, Matvey B. Palchuk, Harold P. Lehmann, Benjamin R. C. Amor, Mark Bissell, Katie R. Bradwell, Sigfried Gold, Stephanie S. Hong, Johanna Loomba, Amin Manna, Julie A. McMurry, Emily Niehaus, Nabeel Qureshi, Anita Walden, Xiaohan Tanner Zhang, Richard L. Zhu, Richard A. Moffitt, Christopher G. Chute, William G. Adams, Shaymaa Al-Shukri, Alfred Anzalone, Ahmad Baghal, Tellen D. Bennett, Elmer V. Bernstam, Mark M. Bissell, Brian Bush, Thomas R. Campion Jr., Victor Castro, Jack Chang, Deepa D. Chaudhari, Wenjin Chen, San Chu, James J. Cimino, Keith A. Crandall, Mark Crooks, Sara J. Deakyne Davies, John Dipalazzo, David A. Dorr, Dan Eckrich, Sarah E. Eltinge, Daniel G. Fort, George Golovko, Snehil Gupta, Melissa A. Haendel, Janos G. Hajagos, David A. Hanauer, Brett M. Harnett, Ronald Horswell, Nancy Huang, Steven G. Johnson, Michael Kahn, Kamil Khanipov, Curtis Kieler, Katherine Ruiz De Luzuriaga, Sarah E. Maidlow, Ashley Martinez, Jomol Mathew, James C. McClay, Gabriel McMahan, Brian Melancon, Stéphane M. Meystre, Lucio Miele, Hiroki Morizono, Ray Pablo, Lav P. Patel, Jimmy Phuong, Daniel J. Popham, Claudia P. Pulgarin, Carlos Santos, Indra Neil Sarkar, Nancy Sazo, Soko Setoguchi, Selvin Soby, Sirisha Surampalli, Christine Suver, Uma Maheswara Reddy Vangala, Shyam Visweswaran, James von Oehsen, Kellie M. Walters, Laura K. Wiley, David A. Williams, Adrian H. Zai:
Synergies between centralized and federated approaches to data quality: a report from the national COVID cohort collaborative. J. Am. Medical Informatics Assoc. 29(4): 609-618 (2022) - [j85]Katie R. Bradwell, Jacob T. Wooldridge, Benjamin R. C. Amor, Tellen D. Bennett, Adit Anand, Carolyn Bremer, Yun Jae Yoo, Zhenglong Qian, Steven G. Johnson, Emily R. Pfaff, Andrew T. Girvin, Amin Manna, Emily Niehaus, Stephanie S. Hong, Xiaohan Tanner Zhang, Richard L. Zhu, Mark Bissell, Nabeel Qureshi, Joel H. Saltz, Melissa A. Haendel, Christopher G. Chute, Harold P. Lehmann, Richard A. Moffitt:
Harmonizing units and values of quantitative data elements in a very large nationally pooled electronic health record (EHR) dataset. J. Am. Medical Informatics Assoc. 29(7): 1172-1182 (2022) - [j84]Jason A. Thomas, Randi E. Foraker, Noa Zamstein, Jon D. Morrow, Philip R. O. Payne, Adam B. Wilcox, Melissa A. Haendel, Christopher G. Chute, Kenneth R. Gersing, Anita Walden, Tellen D. Bennett, David A. Eichmann, Justin Guinney, Warren A. Kibbe, Hongfang Liu, Emily R. Pfaff, Peter N. Robinson, Joel H. Saltz, Heidi Spratt, Justin Starren, Christine Suver, Chunlei Wu, Davera Gabriel, Stephanie S. Hong, Kristin Kostka, Harold P. Lehmann, Richard A. Moffitt, Michele Morris, Matvey B. Palchuk, Xiaohan Tanner Zhang, Richard L. Zhu, Benjamin R. C. Amor, Mark M. Bissell, Marshall Clark, Andrew T. Girvin, Adam M. Lee, Robert T. Miller, Kellie M. Walters, Yooree Chae, Connor Cook, Alexandra Dest, Racquel R. Dietz, Thomas Dillon, Patricia A. Francis, Rafael Fuentes, Alexis Graves, Andrew J. Neumann, Shawn T. O'Neil, Usman Sheikh, Andréa M. Volz, Elizabeth Zampino, Christopher P. Austin, Samuel Bozzette, Mariam Deacy, Nicole Garbarini, Michael G. Kurilla, Sam G. Michael, Joni L. Rutter, Meredith Temple-O'Connor, Katie Rebecca Bradwell, Amin Manna, Nabeel Qureshi, Mary Morrison Saltz, Julie A. McMurry, Carolyn T. Bramante, Jeremy Richard Harper, Wenndy Hernandez, Farrukh M. Koraishy, Federico Mariona, Saidulu Mattapally, Amit Saha, Satyanarayana Vedula, Yujuan Fu, Nisha Mathews, Ofer Mendelevitch:
Demonstrating an approach for evaluating synthetic geospatial and temporal epidemiologic data utility: results from analyzing >1.8 million SARS-CoV-2 tests in the United States National COVID Cohort Collaborative (N3C). J. Am. Medical Informatics Assoc. 29(8): 1350-1365 (2022) - [j83]Yue Yu, Nansu Zong, Andrew Wen, Sijia Liu, Daniel J. Stone, David Knaack, Alanna M. Chamberlain, Emily R. Pfaff, Davera Gabriel, Christopher G. Chute, Nilay Shah, Guoqian Jiang:
Developing an ETL tool for converting the PCORnet CDM into the OMOP CDM to facilitate the COVID-19 data integration. J. Biomed. Informatics 127: 104002 (2022) - [j82]Guohui Xiao, Emily R. Pfaff, Eric Prud'hommeaux, David Booth, Deepak K. Sharma, Nan Huo, Yue Yu, Nansu Zong, Kathryn J. Ruddy, Christopher G. Chute, Guoqian Jiang:
FHIR-Ontop-OMOP: Building clinical knowledge graphs in FHIR RDF with the OMOP Common data Model. J. Biomed. Informatics 134: 104201 (2022) - [c158]Christopher G. Chute, Susan H. Fenton, Mary H. Stanfill, Kathy L. Giannangelo:
Making a Case for Adoption of ICD-11 Morbidity Reporting in the U.S.: Multiple Perspectives. AMIA 2022 - [c157]Nan Huo, Yue Yu, Nansu Zong, Andrea Cheville, Claude Nanjo, Eric Prud'hommeaux, Deirdre Pachman, Guohui Xiao, Emily R. Pfaff, Christopher G. Chute, Guoqian Jiang, Kathryn J. Ruddy:
Modeling a Cancer Symptom Control Domain Using HL7 FHIR: Applicability of the Minimal Common Oncology Data Elements (mCODE). AMIA 2022 - [c156]Yue Yu, Kathryn J. Ruddy, Nan Huo, Nansu Zong, Deirdre Pachman, Christopher G. Chute, Emily R. Pfaff, Andrea Cheville, Guoqian Jiang:
A Comparative Study on the Capability of Real-World Antineoplastic Drug Data Collection by CanMED, ATC and HemOnc. AMIA 2022 - [c155]Saurav Sengupta, Johanna Loomba, Suchetha Sharma, Donald E. Brown, Lorna E. Thorpe, Melissa A. Haendel, Christopher G. Chute, Stephanie S. Hong:
Analyzing historical diagnosis code data from NIH N3C and RECOVER Programs using deep learning to determine risk factors for Long Covid. BIBM 2022: 2797-2802 - [i4]Saurav Sengupta, Johanna Loomba, Suchetha Sharma, Donald E. Brown, Lorna E. Thorpe, Melissa A. Haendel, Christopher G. Chute, Stephanie S. Hong:
Analyzing historical diagnosis code data from NIH N3C and RECOVER Programs using deep learning to determine risk factors for Long Covid. CoRR abs/2210.02490 (2022) - 2021
- [j81]Melissa A. Haendel, Christopher G. Chute, Tellen D. Bennett, David A. Eichmann, Justin Guinney, Warren A. Kibbe, Philip R. O. Payne, Emily R. Pfaff, Peter N. Robinson, Joel H. Saltz, Heidi Spratt, Christine Suver, John Wilbanks, Adam B. Wilcox, Andrew E. Williams, Chunlei Wu, Clair Blacketer, Robert L. Bradford, James J. Cimino, Marshall Clark, Evan W. Colmenares, Patricia A. Francis, Davera Gabriel, Alexis Graves, Raju Hemadri, Stephanie S. Hong, George Hripcsak, Dazhi Jiao, Jeffrey G. Klann, Kristin Kostka, Adam M. Lee, Harold P. Lehmann, Lora Lingrey, Robert T. Miller, Michele Morris, Shawn N. Murphy, Karthik Natarajan, Matvey B. Palchuk, Usman Sheikh, Harold Solbrig, Shyam Visweswaran, Anita Walden, Kellie M. Walters, Griffin M. Weber, Xiaohan Tanner Zhang, Richard L. Zhu, Benjamin R. C. Amor, Andrew T. Girvin, Amin Manna, Nabeel Qureshi, Michael G. Kurilla, Sam G. Michael, Lili M. Portilla, Joni L. Rutter, Christopher P. Austin, Ken R. Gersing:
The National COVID Cohort Collaborative (N3C): Rationale, design, infrastructure, and deployment. J. Am. Medical Informatics Assoc. 28(3): 427-443 (2021) - [j80]James E. Harrison, Stefanie Weber, Robert Jakob, Christopher G. Chute:
ICD-11: an international classification of diseases for the twenty-first century. BMC Medical Informatics Decis. Mak. 21-S(6): 206 (2021) - [j79]Saskia E. Drösler, Stefanie Weber, Christopher G. Chute:
ICD-11 extension codes support detailed clinical abstraction and comprehensive classification. BMC Medical Informatics Decis. Mak. 21-S(6): 278 (2021) - [j78]Christopher G. Chute, Can Çelik:
Overview of ICD-11 architecture and structure. BMC Medical Informatics Decis. Mak. 21-S(6): 378 (2021) - [j77]Kristy Mabon, Olafr Steinum, Christopher G. Chute:
Postcoordination of codes in ICD-11. BMC Medical Informatics Decis. Mak. 21-S(6): 379 (2021) - [j76]Alan J. Forster, Christopher G. Chute, Harold Alan Pincus, William A. Ghali:
ICD-11: A catalyst for advancing patient safety surveillance globally. BMC Medical Informatics Decis. Mak. 21-S(6): 383 (2021) - [j75]Sebastian Köhler, Michael A. Gargano, Nicolas Matentzoglu, Leigh Carmody, David Lewis-Smith, Nicole A. Vasilevsky, Daniel Danis, Ganna Balagura, Gareth Baynam, Amy M. Brower, Tiffany J. Callahan, Christopher G. Chute, Johanna L. Est, Peter D. Galer, Shiva Ganesan, Matthias Griese, Matthias Haimel, Julia Pazmandi, Marc Hanauer, Nomi L. Harris, Michael Hartnett, Maximilian Hastreiter, Fabian Hauck, Yongqun He, Tim Jeske, Hugh Kearney, Gerhard Kindle, Christoph Klein, Katrin Knoflach, Roland Krause, David Lagorce, Julie A. McMurry, Jillian A. Miller, Monica C. Munoz-Torres, Rebecca L. Peters, Christina K. Rapp, Ana Rath, Shahmir A. Rind, Avi Z. Rosenberg, Michael M. Segal, Markus G. Seidel, Damian Smedley, Tomer Talmy, Yarlalu Thomas, Samuel A. Wiafe, Julie Xian, Zafer Yüksel, Ingo Helbig, Christopher J. Mungall, Melissa A. Haendel, Peter N. Robinson:
The Human Phenotype Ontology in 2021. Nucleic Acids Res. 49(Database-Issue): D1207-D1217 (2021) - [i3]Sijia Liu, Andrew Wen, Liwei Wang, Huan He, Sunyang Fu, Robert T. Miller, Andrew E. Williams, Daniel R. Harris, Ramakanth Kavuluru, Mei Liu, Noor Abu-El-Rub, Rui Zhang, John D. Osborne, Masoud Rouhizadeh, Yongqun He, Emily R. Pfaff, Christopher G. Chute, Tim Duong, Melissa A. Haendel, Rafael Fuentes, Peter Szolovits, Hua Xu, Hongfang Liu:
An Open Natural Language Processing Development Framework for EHR-based Clinical Research: A case demonstration using the National COVID Cohort Collaborative (N3C). CoRR abs/2110.10780 (2021) - [i2]Nicolas Matentzoglu, James P. Balhoff, Susan M. Bello, Chris Bizon, Matthew H. Brush, Tiffany J. Callahan, Christopher G. Chute, William D. Duncan, Chris T. A. Evelo, Davera Gabriel, John Graybeal, Alasdair J. G. Gray, Benjamin M. Gyori, Melissa A. Haendel, Henriette Harmse, Nomi L. Harris, Ian Harrow, Harshad Hegde, Amelia L. Hoyt, Charles Tapley Hoyt, Dazhi Jiao, Ernesto Jiménez-Ruiz, Simon Jupp, Hyeongsik Kim, Sebastian Köhler, Thomas Liener, Qinqin Long, James Malone, James A. McLaughlin, Julie A. McMurry, Sierra A. T. Moxon, Monica C. Munoz-Torres, David Osumi-Sutherland, James A. Overton, Bjoern Peters, Tim E. Putman, Núria Queralt-Rosinach, Kent A. Shefchek, Harold Solbrig, Anne E. Thessen, Tania Tudorache, Nicole A. Vasilevsky, Alex H. Wagner, Christopher J. Mungall:
A Simple Standard for Sharing Ontological Mappings (SSSOM). CoRR abs/2112.07051 (2021) - 2020
- [c154]Samson W. Tu, Csongor Nyulas, Tania Tudorache, Mark A. Musen, Andrea Martinuzzi, Coen H. van Gool, Vincenzo Della Mea, Christopher G. Chute, Lucilla Frattura, Nicholas R. Hardiker, Huib ten Napel, Richard Madden, Ann-Helene Almborg, Jeewani Anupama Ginige, Catherine Sykes, Can Çelik, Robert Jakob:
Toward a Harmonized WHO Family of International Classifications Content Model. AMIA 2020 - [c153]Samson W. Tu, Csongor I. Nyulas, Tania Tudorache, Mark A. Musen, Andrea Martinuzzi, Coen H. van Gool, Vincenzo Della Mea, Christopher G. Chute, Lucilla Frattura, Nick Hardiker, Huib ten Napel, Richard Madden, Ann-Helene Almborg, Jeewani Anupama Ginige, Catherine Sykes, Can Celik, Robert Jakob:
Toward a Harmonized WHO Family of International Classifications Content Model. MIE 2020: 1409-1410
2010 – 2019
- 2019
- [j74]Christopher G. Chute, Suzanne Bakken, William M. Tierney, Gretchen Purcell Jackson, James J. Cimino:
The 2018 fellow cohort of the American College of Medical Informatics. J. Am. Medical Informatics Assoc. 26(10): 1150-1155 (2019) - [j73]Karamarie Fecho, Stanley C. Ahalt, Saravanan Arunachalam, James Champion, Christopher G. Chute, Sarah Davis, Kenneth Gersing, Gustavo Glusman, Jennifer Hadlock, Jewel Lee, Emily R. Pfaff, Max Robinson, Eric Sid, Casey N. Ta, Hao Xu, Richard L. Zhu, Qian Zhu, David B. Peden:
Sex, obesity, diabetes, and exposure to particulate matter among patients with severe asthma: Scientific insights from a comparative analysis of open clinical data sources during a five-day hackathon. J. Biomed. Informatics 100 (2019) - [j72]Alan L. Rector, Stefan Schulz, Jean Marie Rodrigues, Christopher G. Chute, Harold Solbrig:
On beyond Gruber: "Ontologies" in today's biomedical information systems and the limits of OWL. J. Biomed. Informatics X 2: 100002 (2019) - [j71]Xingmin Aaron Zhang, Amy Yates, Nicole A. Vasilevsky, Jean-Philippe F. Gourdine, Tiffany J. Callahan, Leigh C. Carmody, Daniel Danis, Marcin P. Joachimiak, Vida Ravanmehr, Emily R. Pfaff, James Champion, Kimberly Robasky, Hao Xu, Karamarie Fecho, Nephi A. Walton, Richard L. Zhu, Justin Ramsdill, Christopher J. Mungall, Sebastian Köhler, Melissa A. Haendel, Clement J. McDonald, Daniel J. Vreeman, David B. Peden, Tellen D. Bennett, James A. Feinstein, Blake Martin, Adrianne L. Stefanski, Lawrence E. Hunter, Christopher G. Chute, Peter N. Robinson:
Semantic integration of clinical laboratory tests from electronic health records for deep phenotyping and biomarker discovery. npj Digit. Medicine 2 (2019) - 2018
- [j70]Samuel J. Aronson, Lawrence J. Babb, Darren C. Ames, Richard A. Gibbs, Eric Venner, John J. Connelly, Keith Marsolo, Chunhua Weng, Marc S. Williams, Andrea L. Hartzler, Wayne H. Liang, James D. Ralston, Emily Beth Devine, Shawn N. Murphy, Christopher G. Chute, Pedro J. Caraballo, Iftikhar J. Kullo, Robert R. Freimuth, Luke V. Rasmussen, Firas H. Wehbe, Josh F. Peterson, Jamie R. Robinson, Ken Wiley, Casey Overby Taylor, eMERGE Network EHRI Working Group:
Empowering genomic medicine by establishing critical sequencing result data flows: the eMERGE example. J. Am. Medical Informatics Assoc. 25(10): 1375-1381 (2018) - [c152]Yizhen Zhong, Luke V. Rasmussen, Yu Deng, Jennifer A. Pacheco, Maureen E. Smith, Justin Starren, Wei-Qi Wei, Peter Speltz, Joshua C. Denny, Nephi Walton, George Hripcsak, Christopher G. Chute, Yuan Luo:
Characterizing Design Patterns of EHR-Driven Phenotype Extraction Algorithms. BIBM 2018: 1143-1146 - [i1]Yizhen Zhong, Luke V. Rasmussen, Yu Deng, Jennifer A. Pacheco, Maureen E. Smith, Justin Starren, Wei-Qi Wei, Peter Speltz, Joshua C. Denny, Nephi Walton, George Hripcsak, Christopher G. Chute, Yuan Luo:
Characterizing Design Patterns of EHR-Driven Phenotype Extraction Algorithms. CoRR abs/1811.06183 (2018) - 2017
- [j69]Deepak K. Sharma, Harold R. Solbrig, Cui Tao, Chunhua Weng, Christopher G. Chute, Guoqian Jiang:
Building a semantic web-based metadata repository for facilitating detailed clinical modeling in cancer genome studies. J. Biomed. Semant. 8(1): 19:1-19:11 (2017) - [j68]Kavishwar B. Wagholikar, Joshua C. Mandel, Jeffrey G. Klann, Nich Wattanasin, Michael Mendis, Christopher G. Chute, Kenneth D. Mandl, Shawn N. Murphy:
SMART-on-FHIR implemented over i2b2. J. Am. Medical Informatics Assoc. 24(2): 398-402 (2017) - [c151]Casey L. Overby, Phillip Thompkins, Harold P. Lehmann, Christopher G. Chute, Jeanne Sheffield:
Value of Genetics-informed Drug Dosing Guidance in Pregnant Women: A Needs Assessment with Obstetric Healthcare Providers at Johns Hopkins. AMIA 2017 - [c150]Christopher G. Chute, Stanley M. Huff:
The Pluripotent Rendering of Clinical Data for Precision Medicine. MedInfo 2017: 337-340 - [c149]Stefan Schulz, Jean Marie Rodrigues, Alan L. Rector, Christopher G. Chute:
Interface Terminologies, Reference Terminologies and Aggregation Terminologies: A Strategy for Better Integration. MedInfo 2017: 940-944 - 2016
- [j67]Casey L. Overby, John J. Connolly, Christopher G. Chute, Joshua C. Denny, Robert R. Freimuth, Andrea L. Hartzler, Ingrid A. Holm, Shannon F. Manzi, Jyotishman Pathak, Peggy L. Peissig, Maureen E. Smith, Marc S. Williams, Brian H. Shirts, Elena M. Stoffel, Peter Tarczy-Hornoch, Carolyn Rohrer Vitek, Wendy A. Wolf, Justin Starren, Luke V. Rasmussen:
Practical considerations for implementing genomic information resources. Appl. Clin. Inform. 07(03): 870-882 (2016) - [j66]Na Hong, Jyotishman Pathak, Christopher G. Chute, Guoqian Jiang:
Developing a modular architecture for creation of rule-based clinical diagnostic criteria. BioData Min. 9: 33 (2016) - [j65]Guoqian Jiang, Julie Evans, Cory M. Endle, Harold R. Solbrig, Christopher G. Chute:
Using Semantic Web technologies for the generation of domain-specific templates to support clinical study metadata standards. J. Biomed. Semant. 7: 10 (2016) - [j64]Thomas A. Oniki, Ning Zhuo, Calvin E. Beebe, Hongfang Liu, Joseph F. Coyle, Craig G. Parker, Harold R. Solbrig, Kyle Marchant, Vinod Kaggal, Christopher G. Chute, Stanley M. Huff:
Clinical element models in the SHARPn consortium. J. Am. Medical Informatics Assoc. 23(2): 248-256 (2016) - [j63]Guoqian Jiang, Richard C. Kiefer, Luke V. Rasmussen, Harold R. Solbrig, Huan Mo, Jennifer A. Pacheco, Jie Xu, Enid N. H. Montague, William K. Thompson, Joshua C. Denny, Christopher G. Chute, Jyotishman Pathak:
Developing a data element repository to support EHR-driven phenotype algorithm authoring and execution. J. Biomed. Informatics 62: 232-242 (2016) - [c148]Eric Prud'hommeaux, Harold R. Solbrig, Deepak K. Sharma, Christopher G. Chute, Guoqian Jiang:
A Semantic Web RDF-based Approach for Modeling HL7 FHIR Profiles. CRI 2016 - [c147]Kavishwar B. Wagholikar, Joshua C. Mandel, Jeffrey G. Klann, Nich Wattanasin, Michael Mendis, Christopher G. Chute, Kenneth D. Mandl, Shawn N. Murphy:
Read only SMART on FHIR Façade for I2b2. CRI 2016 - 2015
- [j62]Liwei Wang, Hongfang Liu, Christopher G. Chute, Qian Zhu:
Cancer based pharmacogenomics network supported with scientific evidences: from the view of drug repurposing. BioData Min. 8: 9 (2015) - [j61]Guoqian Jiang, Hongfang Liu, Harold R. Solbrig, Christopher G. Chute:
Mining severe drug-drug interaction adverse events using Semantic Web technologies: a case study. BioData Min. 8: 12 (2015) - [j60]Rachel L. Richesson, Christopher G. Chute:
Health information technology data standards get down to business: maturation within domains and the emergence of interoperability. J. Am. Medical Informatics Assoc. 22(3): 492-494 (2015) - [j59]María Del Carmen Legaz-García, Marcos Menárguez Tortosa, Jesualdo Tomás Fernández-Breis, Christopher G. Chute, Cui Tao:
Transformation of standardized clinical models based on OWL technologies: from CEM to OpenEHR archetypes. J. Am. Medical Informatics Assoc. 22(3): 536-544 (2015) - [j58]Huan Mo, William K. Thompson, Luke V. Rasmussen, Jennifer A. Pacheco, Guoqian Jiang, Richard C. Kiefer, Qian Zhu, Jie Xu, Enid N. H. Montague, David S. Carrell, Todd Lingren, Frank D. Mentch, Yizhao Ni, Firas H. Wehbe, Peggy L. Peissig, Gerard Tromp, Eric B. Larson, Christopher G. Chute, Jyotishman Pathak, Joshua C. Denny, Peter Speltz, Abel N. Kho, Gail P. Jarvik, Cosmin Adrian Bejan, Marc S. Williams, Kenneth Borthwick, Terrie E. Kitchner, Dan M. Roden, Paul A. Harris:
Desiderata for computable representations of electronic health records-driven phenotype algorithms. J. Am. Medical Informatics Assoc. 22(6): 1220-1230 (2015) - [j57]Brian H. Shirts, Joseph S. Salama, Samuel J. Aronson, Wendy K. Chung, Stacy W. Gray, Lucia A. Hindorff, Gail P. Jarvik, Sharon E. Plon, Elena M. Stoffel, Peter Tarczy-Hornoch, Eliezer M. Van Allen, Karen E. Weck, Christopher G. Chute, Robert R. Freimuth, Robert Grundmeier, Andrea L. Hartzler, Rongling Li, Peggy L. Peissig, Josh F. Peterson, Luke V. Rasmussen, Justin B. Starren, Marc S. Williams, Casey Lynnette Overby:
CSER and eMERGE: current and potential state of the display of genetic information in the electronic health record. J. Am. Medical Informatics Assoc. 22(6): 1231-1242 (2015) - [j56]Qian Zhu, Hongfang Liu, Christopher G. Chute, Matthew Ferber:
EHR based Genetic Testing Knowledge Base (iGTKB) Development. BMC Medical Informatics Decis. Mak. 15-S(4): S3 (2015) - [c146]Guoqian Jiang, Harold R. Solbrig, Richard C. Kiefer, Luke V. Rasmussen, Huan Mo, Jennifer A. Pacheco, Enid N. H. Montague, Jie Xu, Peter Speltz, William K. Thompson, Joshua C. Denny, Christopher G. Chute, Jyotishman Pathak:
Harmonization of Quality Data Model with HL7 FHIR to Support EHR-driven Phenotype Authoring and Execution: A Pilot Study. AMIA 2015 - [c145]Guoqian Jiang, Harold R. Solbrig, Eric Prud'hommeaux, Cui Tao, Chunhua Weng, Christopher G. Chute:
Quality Assurance of Cancer Study Common Data Elements Using A Post-Coordination Approach. AMIA 2015 - [c144]Alan L. Rector, James R. Campbell, Bedirhan Üstün, Christopher G. Chute, Harold R. Solbrig:
Harmonization of ICD-11 and SNOMED CT - Not just mapping! Practical and Theoretical Lessons & Benefits to Users and Implementers. AMIA 2015 - [c143]Harold R. Solbrig, Eric Prud'hommeaux, Christopher G. Chute, Guoqian Jiang:
Representing and Validating Cancer Study Metadata Standard Using RDF Shapes Expression Language. AMIA 2015 - [c142]Na Hong, Dingcheng Li, Yue Yu, Hongfang Liu, Christopher G. Chute, Guoqian Jiang:
Representing Clinical Diagnostic Criteria in Quality Data Model Using Natural Language Processing. BioNLP@IJCNLP 2015: 177-182 - [c141]Jean Marie Rodrigues, David J. Robinson, Vincenzo Della Mea, James R. Campbell, Alan L. Rector, Stefan Schulz, Hazel Brear, Bedirhan Üstün, Kent A. Spackman, Christopher G. Chute, Jane Millar, Harold R. Solbrig, Kristina Brand Persson:
Semantic Alignment between ICD-11 and SNOMED CT. MedInfo 2015: 790-794 - [c140]Na Hong, Guoqian Jiang, Jyotishman Pathak, Christopher G. Chute:
A Pilot Study on Modeling of Diagnostic Criteria Using OWL and SWRL. MedInfo 2015: 1093 - [c139]Guoqian Jiang, Harold R. Solbrig, Jyotishman Pathak, Christopher G. Chute:
Developing a Standards-Based Information Model for Representing Computable Diagnostic Criteria: A Feasibility Study of the NQF Quality Data Model. MedInfo 2015: 1097 - [c138]Guoqian Jiang, Harold R. Solbrig, Richard C. Kiefer, Luke V. Rasmussen, Huan Mo, Peter Speltz, William K. Thompson, Joshua C. Denny, Christopher G. Chute, Jyotishman Pathak:
A Standards-based Semantic Metadata Repository to Support EHR-driven Phenotype Authoring and Execution. MedInfo 2015: 1098 - [c137]Na Hong, Guoqian Jiang, Jyotishman Pathak, Christopher G. Chute:
Developing a Modular Architecture for Creation of Rule-based Clinical Diagnostic Criteria. BDM2I@ISWC 2015 - [c136]Harold R. Solbrig, Eric Prud'hommeaux, Deepak K. Sharma, Christopher G. Chute, Guoqian Jiang:
Feasibility of Modeling HL7 FHIR Profiles Using RDF Shape Expressions Language. SWAT4LS 2015: 208-209 - 2014
- [j55]Yuji Zhang, Cui Tao, Guoqian Jiang, Asha A. Nair, Jian Su, Christopher G. Chute, Hongfang Liu:
Network-based analysis reveals distinct association patterns in a semantic MEDLINE-based drug-disease-gene network. J. Biomed. Semant. 5: 33 (2014) - [j54]Kimberly Clark, Deepak K. Sharma, Rui Qin, Christopher G. Chute, Cui Tao:
A use case study on late stent thrombosis for ontology-based temporal reasoning and analysis. J. Biomed. Semant. 5: 49 (2014) - [j53]George Hripcsak, Meryl Bloomrosen, Patti Flatley Brennan, Christopher G. Chute, James J. Cimino, Don E. Detmer, Margo Edmunds, Peter J. Embí, Melissa M. Goldstein, William Ed Hammond, Gail M. Keenan, Steven E. Labkoff, Shawn P. Murphy, Charles Safran, Stuart M. Speedie, Howard R. Strasberg, Freda Temple, Adam B. Wilcox:
Health data use, stewardship, and governance: ongoing gaps and challenges: a report from AMIA's 2012 Health Policy Meeting. J. Am. Medical Informatics Assoc. 21(2): 204-211 (2014) - [j52]Sunghwan Sohn, Cheryl Clark, Scott R. Halgrim, Sean P. Murphy, Christopher G. Chute, Hongfang Liu:
Research and applications: MedXN: an open source medication extraction and normalization tool for clinical text. J. Am. Medical Informatics Assoc. 21(5): 858-865 (2014) - [c135]Robert R. Freimuth, Kelly Wix, Qian Zhu, Mark Siska, Christopher G. Chute:
Evaluation of RxNorm for Medication Clinical Decision Support. AMIA 2014 - [c134]Peter J. Haug, Xinzi Wu, Jeffrey P. Ferraro, Guergana Savova, Stanley M. Huff, Christopher G. Chute:
Developing a Section Labeler for Clinical Documents. AMIA 2014 - [c133]Guoqian Jiang, Harold R. Solbrig, Bedirhan Üstün, Christopher G. Chute:
Lexical Term Standardization of ICD-11 Using Semantic Web Technologies. AMIA 2014 - [c132]Siddhartha Jonnalagadda, Soheil Moosavinasab, Chinmoy Nath, Dingcheng Li, Christopher G. Chute, Hongfang Liu:
An Automated Approach for Ranking Journals to Help in Clinician Decision Support. AMIA 2014 - [c131]Casey L. Overby, Luke V. Rasmussen, Andrea L. Hartzler, John J. Connolly, Josh F. Peterson, RoseMary Hedberg, Robert R. Freimuth, Brian H. Shirts, Joshua C. Denny, Eric B. Larson, Christopher G. Chute, Gail P. Jarvik, James D. Ralston, Alan R. Shuldiner, Iftikhar J. Kullo, Peter Tarczy-Hornoch, Marc S. Williams:
A Template for Authoring and Adapting Genomic Medicine Content in the eMERGE Infobutton Project. AMIA 2014 - [c130]Chen Wang, Michael T. Zimmermann, Naresh Prodduturi, Christopher G. Chute, Guoqian Jiang:
Adverse Drug Event-based Stratification of Tumor Mutations: A Case Study of Breast Cancer Patients Receiving Aromatase Inhibitors. AMIA 2014 - [c129]Qian Zhu, Hongfang Liu, Christopher G. Chute, Matthew Ferber:
iGenetics: An Individualized Genetic Test Recommendation System Based on EHRs. AMIA 2014 - [c128]Feichen Shen, Dingcheng Li, Hongfang Liu, Yugyung Lee, Jyotishman Pathak, Christopher G. Chute, Cui Tao:
Using semantic web technologies for quality measure phenotyping algorithm representation and automatic execution on EHR data. BHI 2014: 531-534 - [c127]Qian Zhu, Hongfang Liu, Christopher G. Chute, Matthew Ferber:
Genetic testing knowledge base (GTKB) towards individualized genetic test recommendation - An experimental study. BIBM 2014: 574-577 - [c126]Guoqian Jiang, Harold R. Solbrig, Can Celik, Bedirhan Üstün, Christopher G. Chute:
Profiling ICD-11 Terminological Content Using the Common Terminology Services 2 (CTS2) Standard. ICBO 2014 - [c125]Vincenzo Della Mea, Omar Vuattolo, Bedirhan Üstün, Alan L. Rector, Stefan Schulz, Jean Marie Rodrigues, Kent A. Spackman, David J. Robinson, Jane Millar, James R. Campbell, Christopher G. Chute, Harold R. Solbrig, Kristina Brand Persson:
A Web-Based Tool for Development of a Common Ontology between ICD11 and SNOMED-CT. ICHI 2014: 144-148 - [c124]Stefan Schulz, Jean Marie Rodrigues, Alan L. Rector, Kent A. Spackman, James R. Campbell, Bedirhan Üstün, Christopher G. Chute, Harold R. Solbrig, Vincenzo Della Mea, Jane Millar, Kristina Brand Persson:
What's in a Class? Lessons Learnt from the ICD - SNOMED CT Harmonisation. MIE 2014: 1038-1042 - [c123]Jean Marie Rodrigues, Stefan Schulz, Alan L. Rector, Kent A. Spackman, Jane Millar, James R. Campbell, Bedirhan Üstün, Christopher G. Chute, Harold R. Solbrig, Vincenzo Della Mea, Kristina Brand Persson:
ICD-11 and SNOMED CT Common Ontology: Circulatory System. MIE 2014: 1043-1047 - [c122]Guoqian Jiang, Hongfang Liu, Harold R. Solbrig, Christopher G. Chute:
Mining Severe Drug-Drug Interaction Adverse Events Using Semantic Web Technologies: A Case Study. PAKDD Workshops 2014: 628-638 - [c121]Liwei Wang, Hongfang Liu, Christopher G. Chute, Qian Zhu:
Cancer Based Pharmacogenomics Network for Drug Repurposing. PAKDD Workshops 2014: 639-651 - [c120]Qian Zhu, Cui Tao, Feichen Shen, Christopher G. Chute:
Exploring the Pharmacogenomics Knowledge Base (PharmGKB) for Repositioning Breast Cancer Drugs by Leveraging Web Ontology Language (OWL) and Cheminformatics Approaches. Pacific Symposium on Biocomputing 2014: 172-182 - [c119]Guoqian Jiang, Deepak K. Sharma, Harold R. Solbrig, Cui Tao, Chunhua Weng, Christopher G. Chute:
Building a Semantic Web-based Metadata Repository for Facilitating Detailed Clinical Modeling in Cancer Genome Studies. SWAT4LS 2014 - 2013
- [j51]Stephen T. Wu, Vinod Kaggal, Dmitriy Dligach, James J. Masanz, Pei J. Chen, Lee Becker, Wendy Webber Chapman, Guergana K. Savova, Hongfang Liu, Christopher G. Chute:
A common type system for clinical natural language processing. J. Biomed. Semant. 4: 1 (2013) - [j50]Guoqian Jiang, Harold R. Solbrig, Christopher G. Chute:
Using Semantic Web technology to support icd-11 textual definitions authoring. J. Biomed. Semant. 4: 11 (2013) - [j49]Wei-Qi Wei, Cynthia L. Leibson, Jeanine E. Ransom, Abel N. Kho, Christopher G. Chute:
The absence of longitudinal data limits the accuracy of high-throughput clinical phenotyping for identifying type 2 diabetes mellitus subjects. Int. J. Medical Informatics 82(4): 239-247 (2013) - [j48]Cui Tao, Guoqian Jiang, Thomas A. Oniki, Robert R. Freimuth, Qian Zhu, Deepak K. Sharma, Jyotishman Pathak, Stanley M. Huff, Christopher G. Chute:
A semantic-web oriented representation of the clinical element model for secondary use of electronic health records data. J. Am. Medical Informatics Assoc. 20(3): 554-562 (2013) - [j47]Cui Tao, Jyotishman Pathak, Harold R. Solbrig, Wei-Qi Wei, Christopher G. Chute:
Terminology representation guidelines for biomedical ontologies in the semantic web notations. J. Biomed. Informatics 46(1): 128-138 (2013) - [j46]Qian Zhu, Robert R. Freimuth, Zonghui Lian, Scott Bauer, Jyotishman Pathak, Cui Tao, Matthew J. Durski, Christopher G. Chute:
Harmonization and semantic annotation of data dictionaries from the Pharmacogenomics Research Network: A case study. J. Biomed. Informatics 46(2): 286-293 (2013) - [j45]Qian Zhu, Robert R. Freimuth, Jyotishman Pathak, Matthew J. Durski, Christopher G. Chute:
Disambiguation of PharmGKB drug-disease relations with NDF-RT and SPL. J. Biomed. Informatics 46(4): 690-696 (2013) - [j44]Cui Tao, Dezhao Song, Deepak K. Sharma, Christopher G. Chute:
Semantator: Semantic annotator for converting biomedical text to linked data. J. Biomed. Informatics 46(5): 882-893 (2013) - [c118]Guoqian Jiang, Harold R. Solbrig, Christopher G. Chute:
Building A Platform for Supporting Clinical Study Meta-Data Standards Authoring Using Scalable Semantic Web Technologies. AMIA 2013 - [c117]Siddhartha Jonnalagadda, Christopher G. Chute, Hongfang Liu:
Prioritize journals relevant to a clinical topic: A survey of US cardiologists about heart failure. AMIA 2013 - [c116]Dingcheng Li, Liwei Wang, Cui Tao, Christopher G. Chute, Hongfang Liu:
Coreference Resolution from Medical Corpus with Topic Modeling. AMIA 2013 - [c115]Jyotishman Pathak, Cory M. Endle, Dale Suesse, Kevin J. Peterson, Craig Stancl, Dingcheng Li, Christopher G. Chute:
PhenotypePortal: An Open-Source Library and Platform for Authoring, Executing and Visualization of Electronic Health Records Driven Phenotyping Algorithms. AMIA 2013 - [c114]Jyotishman Pathak, Richard C. Kiefer, Christopher G. Chute:
Mining Drug-Drug Interaction Patterns from Linked Clinical Data. AMIA 2013 - [c113]Sunghwan Sohn, Cheryl Clark, Scott R. Halgrim, Sean P. Murphy, Christopher G. Chute, Hongfang Liu:
Medication Extraction and Normalization from Clinical Notes. AMIA 2013 - [c112]Sunghwan Sohn, Cheryl Clark, Scott R. Halgrim, Sean P. Murphy, Christopher G. Chute, Hongfang Liu:
Clinical Drug Extraction and Normalization from Clinical Notes. AMIA 2013 - [c111]Piper A. Svensson-Ranallo, Terrence Adam, Katharine J. Nelson, Robert Krueger, Martin LaVenture, Christopher G. Chute:
Psychological Assessment Instruments: A Coverage Analysis Using SNOMED CT, LOINC and QS Terminology. AMIA 2013 - [c110]Cui Tao, Harold R. Solbrig, Craig Stancl, Kevin J. Peterson, Cory M. Endle, Scott Bauer, Deepak K. Sharma, Christopher G. Chute:
Introduction and Implementation of Common Terminology Services 2 (CTS2). AMIA 2013 - [c109]Qian Zhu, Jyotishman Pathak, Robert R. Freimuth, Christopher G. Chute:
Using standardized clinical data modeling and knowledge representation to compute pharmacogenomic data elements. AMIA 2013 - [c108]Siddhartha Jonnalagadda, Soheil Moosavinasab, Dingcheng Li, Martin D. Abel, Christopher G. Chute, Hongfang Liu:
Prioritizing journals relevant to a topic for addressing clinicians' information needs. BIBM 2013: 5-6 - [c107]Jyotishman Pathak, Richard C. Kiefer, Christopher G. Chute:
Mining drug-drug interaction patterns from linked data: A case study for Warfarin, Clopidogrel, and Simvastatin. BIBM 2013: 23-30 - [c106]Dingcheng Li, Hongfang Liu, Christopher G. Chute, Siddhartha Jonnalagadda:
Towards assigning references using semantic, journal and citation relevance. BIBM 2013: 499-503 - [c105]Jyotishman Pathak, Richard C. Kiefer, Christopher G. Chute:
Mining Anti-coagulant Drug-Drug Interactions from Electronic Health Records Using Linked Data. DILS 2013: 128-140 - [c104]Guoqian Jiang, Harold R. Solbrig, Christopher G. Chute:
A Semantic Web-Based Approach for Harvesting Multilingual Textual Definitions from Wikipedia to Support ICD-11 Revision. VDOS+DO@ICBO 2013 - [c103]Qian Zhu, Guoqian Jiang, Liwei Wang, Christopher G. Chute:
Standardized Drug and Pharmacological Class Network Construction. VDOS+DO@ICBO 2013 - [c102]Cui Tao, Dingcheng Li, Feichen Shen, Zonghui Lian, Jyotishman Pathak, Hongfang Liu, Christopher G. Chute:
Phenotyping on EHR Data Using OWL and Semantic Web Technologies. ICSH 2013: 31-32 - [c101]Harold R. Solbrig, Eric Prud'hommeaux, Christopher G. Chute, Jim Davies:
A Formal Model for RDF Dataset Constraints. JIST 2013: 244-260 - [c100]Jean Marie Rodrigues, Stefan Schulz, Alan L. Rector, Kent A. Spackman, Bedirhan Üstün, Christopher G. Chute, Vincenzo Della Mea, Jane Millar, Kristina Brand Persson:
Sharing Ontology between ICD 11 and SNOMED CT will enable Seamless Re-use and Semantic Interoperability. MedInfo 2013: 343-346 - [c99]Guoqian Jiang, Liwei Wang, Hongfang Liu, Harold R. Solbrig, Christopher G. Chute:
Building a Knowledge Base of Severe Adverse Drug Events Based on AERS Reporting Data Using Semantic Web Technologies. MedInfo 2013: 496-500 - [c98]Jyotishman Pathak, Richard C. Kiefer, Christopher G. Chute:
Using Linked Data for Mining Drug-Drug Interactions in Electronic Health Records. MedInfo 2013: 682-686 - [c97]Catalina Martínez-Costa, Diego Boscá, María Del Carmen Legaz-García, Cui Tao, Jesualdo Tomás Fernández-Breis, Stefan Schulz, Christopher G. Chute:
Isosemantic Rendering of Clinical Information Using Formal Ontologies and RDF. MedInfo 2013: 1085 - [c96]Qian Zhu, Guoqian Jiang, Liwei Wang, Christopher G. Chute:
Standardized Drug and Pharmacological Class Network Construction. MedInfo 2013: 1125 - [c95]Jean Marie Rodrigues, Stefan Schulz, Alan L. Rector, Kent A. Spackman, Bedirhan Üstün, Christopher G. Chute, Vincenzo Della Mea, Jane Millar, Kristina Brand Persson, Dipak Kalra:
Do we need a Common Ontology between ICD 11 and SNOMED CT to ensure Seamless Re-Use and Semantic Interoperability? MedInfo 2013: 1234 - [c94]Kimberly Clark, Deepak K. Sharma, Rui Qin, Christopher G. Chute, Cui Tao:
Ontology-based Temporal Analysis for Medical Device Adverse Event - A Use Case Study on Late Stent Thrombosis. SWAT4LS 2013 - [c93]Guoqian Jiang, Julie Evans, Cory M. Endle, Harold R. Solbrig, Christopher G. Chute:
Using Semantic Web Techologies for the Generation of Domain Templates to Support Clinical Study Meta-Data. SWAT4LS 2013 - 2012
- [j43]Jyotishman Pathak, Richard C. Kiefer, Suzette J. Bielinski, Christopher G. Chute:
Applying semantic web technologies for phenome-wide scan using an electronic health record linked Biobank. J. Biomed. Semant. 3: 10 (2012) - [j42]Cui Tao, Yongqun He, Hannah Yang, Gregory A. Poland, Christopher G. Chute:
Ontology-based time information representation of vaccine adverse events in VAERS for temporal analysis. J. Biomed. Semant. 3: 13 (2012) - [j41]Qian Zhu, Guoqian Jiang, Christopher G. Chute:
Profiling structured product labeling with NDF-RT and RxNorm. J. Biomed. Semant. 3: 16 (2012) - [j40]Mark A. Musen, Natalya Fridman Noy, Nigam H. Shah, Patricia L. Whetzel, Christopher G. Chute, Margaret-Anne D. Storey, Barry Smith:
The National Center for Biomedical Ontology. J. Am. Medical Informatics Assoc. 19(2): 190-195 (2012) - [j39]Abel N. Kho, M. Geoffrey Hayes, Laura Rasmussen-Torvik, Jennifer A. Pacheco, William K. Thompson, Loren L. Armstrong, Joshua C. Denny, Peggy L. Peissig, Aaron W. Miller, Wei-Qi Wei, Suzette J. Bielinski, Christopher G. Chute, Cynthia L. Leibson, Gail P. Jarvik, David R. Crosslin, Christopher S. Carlson, Katherine M. Newton, Wendy A. Wolf, Rex L. Chisholm, William L. Lowe:
Use of diverse electronic medical record systems to identify genetic risk for type 2 diabetes within a genome-wide association study. J. Am. Medical Informatics Assoc. 19(2): 212-218 (2012) - [j38]Wei-Qi Wei, Cynthia L. Leibson, Jeanine E. Ransom, Abel N. Kho, Pedro J. Caraballo, High Seng Chai, Barbara P. Yawn, Jennifer A. Pacheco, Christopher G. Chute:
Impact of data fragmentation across healthcare centers on the accuracy of a high-throughput clinical phenotyping algorithm for specifying subjects with type 2 diabetes mellitus. J. Am. Medical Informatics Assoc. 19(2): 219-224 (2012) - [j37]Guoqian Jiang, Harold R. Solbrig, Christopher G. Chute:
Quality evaluation of value sets from cancer study common data elements using the UMLS semantic groups. J. Am. Medical Informatics Assoc. 19(e1) (2012) - [j36]Guergana K. Savova, Janet E. Olson, Sean P. Murphy, Victoria L. Cafourek, Fergus J. Couch, Matthew P. Goetz, James N. Ingle, Vera J. Suman, Christopher G. Chute, Richard M. Weinshilboum:
Automated discovery of drug treatment patterns for endocrine therapy of breast cancer within an electronic medical record. J. Am. Medical Informatics Assoc. 19(e1) (2012) - [j35]Stephen T. Wu, Hongfang Liu, Dingcheng Li, Cui Tao, Mark A. Musen, Christopher G. Chute, Nigam H. Shah:
Unified Medical Language System term occurrences in clinical notes: a large-scale corpus analysis. J. Am. Medical Informatics Assoc. 19(e1) (2012) - [j34]Himali Saitwal, David Qing, Stephen Jones, Elmer V. Bernstam, Christopher G. Chute, Todd R. Johnson:
Cross-terminology mapping challenges: A demonstration using medication terminological systems. J. Biomed. Informatics 45(4): 613-625 (2012) - [j33]Susan Rea, Jyotishman Pathak, Guergana K. Savova, Thomas A. Oniki, Les Westberg, Calvin E. Beebe, Cui Tao, Craig G. Parker, Peter J. Haug, Stanley M. Huff, Christopher G. Chute:
Building a robust, scalable and standards-driven infrastructure for secondary use of EHR data: The SHARPn project. J. Biomed. Informatics 45(4): 763-771 (2012) - [j32]Himali Saitwal, David Qing, Stephen Jones, Elmer V. Bernstam, Christopher G. Chute, Todd R. Johnson:
Erratum to "Cross-terminology mapping challenges: A demonstration using medication terminological systems" [J. Biomed. Inform. (2012) 613-625]. J. Biomed. Informatics 45(6): 1217 (2012) - [c92]Robert J. Carroll, Katherine P. Liao, Anne E. Eyler, Lisa Bastarache, Dana C. Crawford, Peggy L. Peissig, Jyotishman Pathak, David Carrell, Abel N. Kho, Rongling Li, Daniel R. Masys, Gail P. Jarvik, Christopher G. Chute, Rex L. Chisholm, Eric B. Larson, Catherine A. McCarty, Iftikhar J. Kullo:
Using PheWAS to Assess Pleiotropy of Genetic Risk Scores for Rheumatoid Arthritis and Coronary Artery Disease in the eMERGE Network. AMIA 2012 - [c91]Christopher G. Chute, Alex Alexander, Timothy Peters, Kris Riess, Rod Hughbanks, Lacey Hart, Larry Lemmon, Danial Jensen, Calvin E. Beebe:
Comprehensive, Population-based, Peer-to-Peer Health Information Exchange and Clinical Data Repository Creation among Rural Practices and County Public Health Departments: The SE MN Beacon Community. AMIA 2012 - [c90]Cory M. Endle, Sahana Murthy, Dale Suesse, Craig Stancle, Dingcheng Li, Lacey Hart, Christopher G. Chute, Jyotishman Pathak:
Visualization and Reporting of Results for Electronic Health Records Driven Phenotyping using the Open-Source popHealth Platform. AMIA 2012 - [c89]Jorge R. Herskovic, Christopher G. Chute, Julian M. Goldman, Bernie Ács, David A. Kreda:
The Pan-SHARP Project: An Interdisciplinary approach to Medication Reconciliation. AMIA 2012 - [c88]Guoqian Jiang, Cory M. Endle, Harold R. Solbrig, Christopher G. Chute:
A Proposal Provenance Model for ICD-11 Revision Beta Phase. AMIA 2012 - [c87]Dingcheng Li, Sahana Murthy, Davide Sottara, Christopher G. Chute, Stanley M. Huff, Jyotishman Pathak, Cory M. Endle, Dale Suesse, Craig Stancle:
Modeling and Executing Electronic Health Records Driven Phenotyping Algorithms using the NQF Quality Data Model and JBoss® Drools Engine. AMIA 2012 - [c86]Hongfang Liu, Stephen T. Wu, Dingcheng Li, Siddhartha Jonnalagadda, Sunghwan Sohn, Kavishwar B. Wagholikar, Peter J. Haug, Stanley M. Huff, Christopher G. Chute:
Towards a semantic lexicon for clinical natural language processing. AMIA 2012 - [c85]Jyotishman Pathak, Aref Al-Kali, Jayant Talwalkar, Abel N. Kho, Joshua C. Denny, Sean P. Murphy, Kevin Bruce, Matthew J. Durski, Christopher G. Chute:
Using Electronic Health Records to Identify Patient Cohorts for Drug-Induced Thrombocytopenia, Neutropenia and Liver Injury. AMIA 2012 - [c84]Jyotishman Pathak, Richard C. Kiefer, Suzette J. Bielinski, Christopher G. Chute:
Mining the Human Phenome using Semantic Web Technologies: A Case Study for Type 2 Diabetes. AMIA 2012 - [c83]Jyotishman Pathak, Richard C. Kiefer, Robert R. Freimuth, Suzette J. Bielinski, Christopher G. Chute:
Mining Genotype-Phenotype Associations from Electronic Health Records and Biorepositories using Semantic Web Technologies. AMIA 2012 - [c82]Cui Tao, Harold R. Solbrig, Pradip Kanjamala, Kevin J. Peterson, Craig Stancle, Christopher G. Chute:
Common Terminology Services 2 (CTS2) for Biomedical Community. AMIA 2012 - [c81]Stephen T. Wu, Mark Wieland, Vinod Kaggal, Hongfang Liu, Christopher G. Chute:
Tracking Immigrant Health with Natural Language Processing. AMIA 2012 - [c80]Qian Zhu, Guoqian Jiang, Christopher G. Chute:
A Standardized Drug and Drug Class Universal Network. AMIA 2012 - [c79]Christopher G. Chute:
(1) Obstacles and options for big-data applications in biomedicine: The role of standards and normalizations. BIBM 2012: 1 - [c78]Dingcheng Li, Cui Tao, Hongfang Liu, Christopher G. Chute:
Ontology-Based Temporal Relation Modeling with MapReduce Latent Dirichlet Allocations for Big EHR Data. CGC 2012: 708-715 - [c77]Guoqian Jiang, Julie Evans, Thomas A. Oniki, Joey Coyle, Landen Bain, Stanley M. Huff, Rebecca Daniels Kush, Christopher G. Chute:
Harmonization of detailed clinical models with clinical study data standard. MIX-HS 2012: 23-30 - [c76]Hongfang Liu, Stephen T. Wu, Cui Tao, Christopher G. Chute:
Modeling UIMA type system using web ontology language: towards interoperability among UIMA-based NLP tools. MIX-HS 2012: 31-36 - [c75]Cui Tao, Yuji Zhang, Guoqian Jiang, Matt-Mouley Bouamrane, Christopher G. Chute:
Optimizing semantic MEDLINE for translational science studies using semantic web technologies. MIX-HS 2012: 53-58 - [c74]Sunghwan Sohn, Sean P. Murphy, Siddhartha Jonnalagadda, Kavishwar B. Wagholikar, Stephen T. Wu, Christopher G. Chute, Hongfang Liu, Scott R. Halgrim:
Systematic Analysis of Cross-Institutional Medication Description Patterns in Clinical Notes. HISB 2012: 118 - [c73]Cui Tao, Guoqian Jiang, Thomas A. Oniki, Robert R. Freimuth, Jyotishman Pathak, Qian Zhu, Deepak K. Sharma, Stanley M. Huff, Christopher G. Chute:
A Semantic-Web Oriented Representation of Clinical Element Model for Secondary Use of Electronic Healthcare Data. HISB 2012: 133 - [c72]Jyotishman Pathak, Richard C. Kiefer, Christopher G. Chute:
Applying linked data principles to represent patient's electronic health records at Mayo clinic: a case report. IHI 2012: 455-464 - [c71]Cui Tao, Krist Wongsuphasawat, Kimberly Clark, Catherine Plaisant, Ben Shneiderman, Christopher G. Chute:
Towards event sequence representation, reasoning and visualization for EHR data. IHI 2012: 801-806 - [c70]Jyotishman Pathak, Laura C. Weiss, Matthew J. Durski, Qian Zhu, Robert R. Freimuth, Christopher G. Chute:
Integrating VA's NDF-RT Drug Terminology with PharmGKB: Preliminary Results. Pacific Symposium on Biocomputing 2012: 400-409 - [c69]Guoqian Jiang, Harold R. Solbrig, Christopher G. Chute:
Building Standardized Semantic Web RESTful Services to Support ICD-11 Revision. SWAT4LS 2012 - 2011
- [j31]Jyotishman Pathak, Christopher G. Chute:
Letter: Further revamping VA's NDF-RT drug terminology for clinical research. J. Am. Medical Informatics Assoc. 18(3): 347-348 (2011) - [j30]Jyotishman Pathak, Janey Wang, Sudha Kashyap, Melissa A. Basford, Rongling Li, Daniel R. Masys, Christopher G. Chute:
Mapping clinical phenotype data elements to standardized metadata repositories and controlled terminologies: the eMERGE Network experience. J. Am. Medical Informatics Assoc. 18(4): 376-386 (2011) - [j29]Sunghwan Sohn, Jean-Pierre A. Kocher, Christopher G. Chute, Guergana K. Savova:
Drug side effect extraction from clinical narratives of psychiatry and psychology patients. J. Am. Medical Informatics Assoc. 18(Supplement): 144-149 (2011) - [j28]Serguei V. S. Pakhomov, Ted Pedersen, Bridget T. McInnes, Genevieve B. Melton, Alexander Ruggieri, Christopher G. Chute:
Towards a framework for developing semantic relatedness reference standards. J. Biomed. Informatics 44(2): 251-265 (2011) - [j27]Guoqian Jiang, Harold R. Solbrig, Christopher G. Chute:
Quality evaluation of cancer study Common Data Elements using the UMLS Semantic Network. J. Biomed. Informatics 44(Supplement-1): S78-S85 (2011) - [c68]Cui Tao, Natalya Fridman Noy, Harold R. Solbrig, Nigam H. Shah, Mark A. Musen, Christopher G. Chute:
Proposed SKOS Extensions for BioPortal Terminology Services. JIST 2011: 342-349 - [c67]Guoqian Jiang, Jon D. Duke, Jyotishman Pathak, Christopher G. Chute:
An Ontological Representation of Adverse Drug Events. ICBO 2011 - [c66]Guoqian Jiang, Harold R. Solbrig, Robert J. G. Chalmers, Kent A. Spackman, Alan L. Rector, Christopher G. Chute:
A Case Study of ICD-11 Anatomy Value Set Extraction from SNOMED CT. ICBO 2011 - [c65]Jyotishman Pathak, Shawn P. Murphy, Brian N. Willaert, Hilal M. Kremers, Christopher G. Chute, Barbara P. Yawn, Walter A. Rocca:
Using RxNorm to Extract Medication Data from Electronic Health Records in the Rochester Epidemiology Project. ICBO 2011 - [c64]Cui Tao, Guoqian Jiang, Kimberly Clark, Deepak K. Sharma, Christopher G. Chute:
Toward Answering Time-Related Questions from Adverse Event Reports Using Ontology-Based Approaches. ICBO 2011 - [c63]Patricia L. Whetzel, Natasha F. Noy, Nigam Shah, Paul R. Alexander, Michael Dorf, Ray W. Fergerson, Margaret-Anne D. Storey, Barry Smith, Christopher G. Chute, Mark A. Musen:
Bioportal: Ontologies and Integrated Data Resources at the Click of a Mouse. ICBO 2011 - [c62]Guoqian Jiang, Harold R. Solbrig, Christopher G. Chute:
Using semantic web technology to support ICD-11 textual definitions authoring. SWAT4LS 2011: 38-44 - [c61]Jyotishman Pathak, Richard C. Kiefer, Christopher G. Chute:
The linked clinical data project: applying semantic web technologies for clinical and translational research using electronic medical records. SWAT4LS 2011: 94-95 - 2010
- [j26]Christopher G. Chute, Scott A. Beck, Thomas B. Fisk, David N. Mohr:
The Enterprise Data Trust at Mayo Clinic: a semantically integrated warehouse of biomedical data. J. Am. Medical Informatics Assoc. 17(2): 131-135 (2010) - [j25]Jyotishman Pathak, Christopher G. Chute:
Analyzing categorical information in two publicly available drug terminologies: RxNorm and NDF-RT. J. Am. Medical Informatics Assoc. 17(4): 432-439 (2010) - [j24]Guergana K. Savova, James J. Masanz, Philip V. Ogren, Jiaping Zheng, Sunghwan Sohn, Karin Kipper Schuler, Christopher G. Chute:
Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications. J. Am. Medical Informatics Assoc. 17(5): 507-513 (2010) - [j23]Iftikhar J. Kullo, Jin Fan, Jyotishman Pathak, Guergana K. Savova, Zeenat Ali, Christopher G. Chute:
Leveraging informatics for genetic studies: use of the electronic medical record to enable a genome-wide association study of peripheral arterial disease. J. Am. Medical Informatics Assoc. 17(5): 568-574 (2010) - [j22]Jyotishman Pathak, Lee B. Peters, Christopher G. Chute, Olivier Bodenreider:
Comparing and evaluating terminology services application programming interfaces: RxNav, UMLSKS and LexBIG. J. Am. Medical Informatics Assoc. 17(6): 714-719 (2010) - [j21]Jonathan S. Schildcrout, Melissa A. Basford, Jill M. Pulley, Daniel R. Masys, Dan M. Roden, Deede Wang, Christopher G. Chute, Iftikhar J. Kullo, David Carrell, Peggy L. Peissig, Abel N. Kho, Joshua C. Denny:
An analytical approach to characterize morbidity profile dissimilarity between distinct cohorts using electronic medical records. J. Biomed. Informatics 43(6): 914-923 (2010) - [c60]Cui Tao, Harold R. Solbrig, Deepak K. Sharma, Wei-Qi Wei, Guergana K. Savova, Christopher G. Chute:
Time-Oriented Question Answering from Clinical Narratives Using Semantic-Web Techniques. ISWC (2) 2010: 241-256
2000 – 2009
- 2009
- [j20]Jyotishman Pathak, Thomas M. Johnson, Christopher G. Chute:
Survey of modular ontology techniques and their applications in the biomedical domain. Integr. Comput. Aided Eng. 16(3): 225-242 (2009) - [j19]Guoqian Jiang, Christopher G. Chute:
Viewpoint Paper: Auditing the Semantic Completeness of SNOMED CT Using Formal Concept Analysis. J. Am. Medical Informatics Assoc. 16(1): 89-102 (2009) - [j18]Jyotishman Pathak, Harold R. Solbrig, James D. Buntrock, Thomas M. Johnson, Christopher G. Chute:
Implementation Brief: LexGrid: A Framework for Representing, Storing, and Querying Biomedical Terminologies from Simple to Sublime. J. Am. Medical Informatics Assoc. 16(3): 305-315 (2009) - [j17]Guoqian Jiang, Jyotishman Pathak, Christopher G. Chute:
Formalizing ICD coding rules using Formal Concept Analysis. J. Biomed. Informatics 42(3): 504-517 (2009) - [j16]Natalya Fridman Noy, Nigam H. Shah, Patricia L. Whetzel, Benjamin Dai, Michael Dorf, Nicholas Griffith, Clément Jonquet, Daniel L. Rubin, Margaret-Anne D. Storey, Christopher G. Chute, Mark A. Musen:
BioPortal: ontologies and integrated data resources at the click of a mouse. Nucleic Acids Res. 37(Web-Server-Issue): 170-173 (2009) - 2008
- [j15]Guergana K. Savova, Philip V. Ogren, Patrick H. Duffy, James D. Buntrock, Christopher G. Chute:
Technical Brief: Mayo Clinic NLP System for Patient Smoking Status Identification. J. Am. Medical Informatics Assoc. 15(1): 25-28 (2008) - [j14]Christopher G. Chute:
Editorial Comments: Biosurveillance, Classification, and Semantic Health Technologies. J. Am. Medical Informatics Assoc. 15(2): 172-173 (2008) - [j13]Guergana K. Savova, Anni Coden, Igor L. Sominsky, Rie Johnson, Philip V. Ogren, Piet C. de Groen, Christopher G. Chute:
Word sense disambiguation across two domains: Biomedical literature and clinical notes. J. Biomed. Informatics 41(6): 1088-1100 (2008) - [c59]Jyotishman Pathak, James D. Buntrock, Christopher G. Chute:
LexSearch: An Approach for Leveraging Semantic Annotations to Searching Ontologies. AAAI Spring Symposium: Semantic Scientific Knowledge Integration 2008: 68-73 - [c58]Robert R. Freimuth, Michael W. Schauer, Preeti Lodha, Poornima Govindrao, Rakesh Nagarajan, Christopher G. Chute:
caBIG™ Compatibility Review System: Software to Support the Evaluation of Applications Using Defined Interoperability Criteria. AMIA 2008 - [c57]Vitaly Herasevich, Bekele Afessa, Christopher G. Chute, Ognjen Gajic:
Designing and testing computer based screening engine for severe sepsis/septic shock. AMIA 2008 - [c56]Jyotishman Pathak, Guoqian Jiang, Sridhar O. Dwarkanath, James D. Buntrock, Christopher G. Chute:
LexValueSets: An Approach for Context-Driven Value Sets Extraction. AMIA 2008 - [c55]Jyotishman Pathak, Thomas M. Johnson, Christopher G. Chute:
Modular ontology techniques and their applications in the biomedical domain. IRI 2008: 351-356 - [c54]Guoqian Jiang, Christopher G. Chute:
Comparing the Effects of Two Semantic Terminology Models on Classification of Clinical Notes: A Study of Heart Murmur Findings. KR-MED 2008 - [c53]Philip V. Ogren, Guergana K. Savova, Christopher G. Chute:
Constructing Evaluation Corpora for Automated Clinical Named Entity Recognition. LREC 2008 - [c52]Jyotishman Pathak, Guoqian Jiang, Sridhar O. Dwarkanath, James D. Buntrock, Christopher G. Chute:
Adopting Graph Traversal Techniques for Context-Driven Value Sets Extraction from Biomedical Knowledge Sources. ICSC 2008: 460-467 - 2007
- [j12]Ted Pedersen, Serguei V. S. Pakhomov, Siddharth Patwardhan, Christopher G. Chute:
Measures of semantic similarity and relatedness in the biomedical domain. J. Biomed. Informatics 40(3): 288-299 (2007) - 2006
- [j11]Serguei V. S. Pakhomov, Anni Coden, Christopher G. Chute:
Developing a corpus of clinical notes manually annotated for part-of-speech. Int. J. Medical Informatics 75(6): 418-429 (2006) - [j10]Serguei V. S. Pakhomov, James D. Buntrock, Christopher G. Chute:
Research Paper: Automating the Assignment of Diagnosis Codes to Patient Encounters Using Example-based and Machine Learning Techniques. J. Am. Medical Informatics Assoc. 13(5): 516-525 (2006) - [c51]Mahesh Joshi, Serguei V. S. Pakhomov, Ted Pedersen, Richard Maclin, Christopher G. Chute:
An End-to-End Supervised Target-Word Sense Disambiguation System. AAAI 2006: 1941-1942 - [c50]Mahesh Joshi, Serguei V. S. Pakhomov, Ted Pedersen, Christopher G. Chute:
A Comparative Study of Supervised Learning as Applied to Acronym Expansion in Clinical Reports. AMIA 2006 - [c49]Philip V. Ogren, Guergana Savova, James D. Buntrock, Christopher G. Chute:
Building and Evaluating Annotated Corpora for Medical NLP Systems. AMIA 2006 - [c48]Serguei V. S. Pakhomov, Christopher G. Chute:
A Hybrid Approach to Determining Modification of Clinical Diagnoses. AMIA 2006 - 2005
- [j9]Sergey V. Pakhomov, James D. Buntrock, Christopher G. Chute:
Prospective recruitment of patients with congestive heart failure using an ad-hoc binary classifier. J. Biomed. Informatics 38(2): 145-153 (2005) - [j8]Anni Coden, Sergey V. Pakhomov, Rie Kubota Ando, Patrick H. Duffy, Christopher G. Chute:
Domain-specific language models and lexicons for tagging. J. Biomed. Informatics 38(6): 422-430 (2005) - [c47]Thomas M. Johnson, Harold R. Solbrig, Daniel C. Armbrust, Christopher G. Chute:
LexGrid Editor: Terminology Authoring for the Lexical Grid. AMIA 2005 - [c46]Serguei Pakhomov, Ted Pedersen, Christopher G. Chute:
Abbreviation and Acronym Disambiguation in Clinical Discourse. AMIA 2005 - [c45]Guergana Savova, Marcelline R. Harris, Serguei Pakhomov, Christopher G. Chute:
Frame Semantics and the Domain of Functioning, Disability and Health. AMIA 2005 - [c44]Kaustubh Supekar, Christopher G. Chute, Harold R. Solbrig:
Representing Lexical Components of Medical Terminologies in OWL. AMIA 2005 - 2004
- [c43]Serguei Pakhomov, Anni Coden, Christopher G. Chute:
Creating a Test Corpus of Clinical Notes Manually Tagged for Part-of-Speech Information. NLPBA/BioNLP 2004 - [c42]Samson W. Tu, Mark A. Musen, Ravi D. Shankar, James R. Campbell, Karen M. Hrabak, James C. McClay, Stanley M. Huff, Robert C. McClure, Craig G. Parker, Roberto A. Rocha, Robert M. Abarbanel, Nick Beard, Julie Glasgow, Guy Mansfield, Prabhu Ram, Qin Ye, Eric Mays, Tony Weida, Christopher G. Chute, Kevin McDonald, David N. Mohr, Mark A. Nyman, Sidna M. Scheitel, Harold Solbrig, David A. Zill, Mary K. Goldstein:
Modeling Guidelines for Integration into Clinical Workflow. MedInfo 2004: 174-178 - [c41]Serguei V. S. Pakhomov, James D. Buntrock, Christopher G. Chute:
Using Compund Codes for Automatic Classification of Clinical Diagnoses. MedInfo 2004: 411-415 - [c40]Alexander P. Ruggieri, Serguei V. S. Pakhomov, Christopher G. Chute:
A Corpus Driven Approach Applying the "Frame Semantic" Method for Modeling Functional Status Terminology. MedInfo 2004: 434-438 - [c39]Harold R. Solbrig, Christopher G. Chute:
Terminology Access Methods Leveraging LDAP Resources. MedInfo 2004: 545-549 - 2003
- [j7]Marcelline R. Harris, Guergana K. Savova, Thomas M. Johnson, Christopher G. Chute:
A term extraction tool for expanding content in the domain of functioning, disability, and health: proof of concept. J. Biomed. Informatics 36(4-5): 250-259 (2003) - [c38]Christopher G. Chute, John S. Carter, Mark S. Tuttle, Margaret W. Haber, Steven H. Brown:
Integrating Pharmacokinetics Knowledge into a Drug Ontology As an Extension to Support Pharmacogenomics. AMIA 2003 - [c37]Marcelline R. Harris, Hyeoneui Kim, Lori Rhudy, Guergana Savova, Christopher G. Chute:
Testing the Generalizability of the ISO Model for Nursing Diagnoses. AMIA 2003 - [c36]Guergana K. Savova, Marcelline R. Harris, Thomas M. Johnson, Serguei V. S. Pakhomov, Christopher G. Chute:
A Data-Driven Approach for Extracting "the Most Specific Term" for Ontology Development. AMIA 2003 - [c35]Harold R. Solbrig, Daniel C. Armbrust, Christopher G. Chute:
The Open Terminology Services (OTS) Project: AMIA 2003 Open Source Expo. AMIA 2003 - [c34]Sergey V. Pakhomov, James D. Buntrock, Christopher G. Chute:
Identification of Patients with Congestive Heart Failure using a Binary Classifier: A Case Study. BioNLP@ACL 2003: 89-96 - 2002
- [c33]James D. Buntrock, Christopher G. Chute:
An evaluation of unmediated versus mediated retrieval services. AMIA 2002 - [c32]Christopher G. Chute:
The horizontal and vertical nature of patient phenotype retrieval: new directions for clinical text processing. AMIA 2002 - [c31]Serguei V. S. Pakhomov, Alexander Ruggieri, Christopher G. Chute:
Maximum entropy modeling for mining patient medication status from free text. AMIA 2002 - 2001
- [c30]K. Gwaltney, Christopher G. Chute, Douglas Hageman, Warren A. Kibbe, Kathleen A. McCormick, Dianne M. Reeves, Lawrence W. Wright:
An assessment of cancer clinical trials vocabulary and IT infrastructure in the U.S. AMIA 2001 - [c29]Alexander Ruggieri, Peter L. Elkin, Harold R. Solbrig, Christopher G. Chute:
Expression of a domain ontology model in unified modeling language for the World Health Organization International classification of impairment, disability, and handicap, version 2. AMIA 2001 - [c28]Peter L. Elkin, Steven H. Brown, Christopher G. Chute:
Guideline for Health Informatics: Controlled Health Vocabularies - Vocabulary Structure and High-level Indicators. MedInfo 2001: 191-195 - [c27]William A. Yasnoff, Christopher G. Chute, Jean-Raoul Scherrer, Didier Pittet:
Charting the Future of Public Health Informatics. MedInfo 2001: 1519 - [c26]Marion J. Ball, John S. Silva, Hans Peterson, Christopher G. Chute:
The Patient Record in Cancer Care. MedInfo 2001: 1526 - [c25]Robert H. Baud, Stephen B. Johnson, Christopher G. Chute, Olivier Bodenreider, Jeremy Rogers, Anita Burgun:
Natural Language Processing, Medical Terminologies, and Ontological Issues for Patient Records and Biomedical Knowledge. MedInfo 2001: 1533 - 2000
- [j6]Christopher G. Chute:
Viewpoint: Clinical Classification and Terminology: Some History and Current Observations. J. Am. Medical Informatics Assoc. 7(3): 298-303 (2000) - [j5]Marcelline R. Harris, Judith R. Graves, Harold R. Solbrig, Peter L. Elkin, Christopher G. Chute:
Review: Embedded Structures and Representation of Nursing Knowledge. J. Am. Medical Informatics Assoc. 7(6): 539-549 (2000) - [c24]Peter L. Elkin, Alexander Ruggieri, Larry Bergstrom, Brent A. Bauer, Mark Lee, Philip V. Ogren, Christopher G. Chute:
A randomized controlled trial of concept based indexing of Web page content. AMIA 2000 - [c23]Marcelline R. Harris, Judith R. Graves, Linda Herrick, Peter L. Elkin, Christopher G. Chute:
The content coverage and organizational structure of terminologies: the example of postoperative pain. AMIA 2000 - [c22]Alexander Ruggieri, Peter L. Elkin, Christopher G. Chute:
Representation by standard terminologies of health status concepts contained in two health status assessment instruments used in rheumatic disease management. AMIA 2000 - [c21]Harold R. Solbrig, Peter L. Elkin, Philip V. Ogren, Christopher G. Chute:
A formal approach to integrating synonyms with a reference terminology. AMIA 2000
1990 – 1999
- 1999
- [c20]Christopher G. Chute, Peter L. Elkin, David D. Sherertz, Mark S. Tuttle:
Desiderata for a clinical terminology server. AMIA 1999 - [c19]Dermot Dunne, Christopher G. Chute:
Detailed content and terminological properties of DSM-IV. AMIA 1999 - [c18]Peter L. Elkin, Kent R. Bailey, Philip V. Ogren, Brent A. Bauer, Christopher G. Chute:
A randomized double-blind controlled trial of automated term dissection. AMIA 1999 - [c17]Marcelline R. Harris, Christopher G. Chute:
Towards Unambiguous Representation of Nursing-Sensitive Concepts. AMIA 1999 - [c16]Furman S. McDonald, Christopher G. Chute, Philip V. Ogren, Dietlind Wahner-Roedler, Peter L. Elkin:
A large-scale evaluation of terminology integration characteristics. AMIA 1999 - [c15]Lawrence K. McKnight, Peter L. Elkin, Philip V. Ogren, Christopher G. Chute:
Barriers to the clinical implementation of compositionality. AMIA 1999 - 1998
- [j4]Christopher G. Chute, Simon P. Cohn, James R. Campbell:
Position Paper: A Framework for Comprehensive Health Terminology Systems in the United States: Development Guidelines, Criteria for Selection, and Public Policy Implications. J. Am. Medical Informatics Assoc. 5(6): 503-510 (1998) - [c14]Christopher G. Chute:
The Copernican era of healthcare terminology: a re-centering of health information systems. AMIA 1998 - [c13]Christopher G. Chute, Peter L. Elkin, Susan H. Fenton, Geoffrey E. Atkin:
A clinical terminology in the post modern era: pragmatic problem list development. AMIA 1998 - [c12]Peter L. Elkin, Kent R. Bailey, Christopher G. Chute:
A randomized controlled trial of automated term composition. AMIA 1998 - [c11]Peter L. Elkin, Mark S. Tuttle, Kevin Keck, Geoffrey E. Atkin, Christopher G. Chute:
A Java-Based Tool for Entry of a Medical Problem List, Which Accesses a Remote Large-Scale Enterprise Vocabulary Server. AMIA 1998 - [c10]Qiang Liu, James D. Buntrock, Douglas L. Crowson, Mark S. Tuttle, Peter L. Elkin, Christopher G. Chute:
A Java-Based Interface for Medical Research Project Classification Using Metaphrase. AMIA 1998 - [c9]Peter L. Elkin, Mark S. Tuttle, Kevin Keck, Keith E. Campbell, Geoffrey E. Atkin, Christopher G. Chute:
The Role of Compositionality in Standardized Problem List Generation. MedInfo 1998: 660-664 - 1997
- [j3]James R. Campbell, Paul C. Carpenter, Charles Sneiderman, Simon P. Cohn, Christopher G. Chute, Judith J. Warren:
Research Paper: Phase II Evaluation of Clinical Coding Schemes: Completeness, Taxonomy, Mapping, Definitions, and Clarity. J. Am. Medical Informatics Assoc. 4(3): 238-251 (1997) - [c8]Christopher G. Chute, Peter L. Elkin:
A clinically derived terminology: qualification to reduction. AMIA 1997 - [c7]P. L. Claus, Paul C. Carpenter, Christopher G. Chute, David N. Mohr, P. S. Gibbons:
Clinical care management and workflow by episodes. AMIA 1997 - [c6]William G. Cole, David D. Sherertz, Mark S. Tuttle, Kevin Keck, Nels Olson, Christopher G. Chute, Charles Safran:
Metaphrase: Achieving Formalized EMR Problem Lists from Informal Input. AMIA 1997 - [c5]Peter L. Elkin, David N. Mohr, Mark S. Tuttle, William G. Cole, Geoffrey E. Atkin, Kevin Keck, Thomas B. Fisk, B. H. Kaihoi, K. E. Lee, Michael C. Higgins, Henri J. Suermondt, Nels Olson, P. L. Claus, Paul C. Carpenter, Christopher G. Chute:
Standardized problem list generation, utilizing the Mayo canonical vocabulary embedded within the Unified Medical Language System. AMIA 1997 - [c4]Kevin Keck, Keith E. Campbell, Christopher G. Chute, Peter L. Elkin, Mark S. Tuttle, William G. Cole:
Supporting Postcoordination in an Electronic Problem List. AMIA 1997 - 1996
- [j2]Christopher G. Chute, Simon P. Cohn, Keith E. Campbell, Diane E. Oliver, James R. Campbell:
Research Paper: The Content Coverage of Clinical classifications. J. Am. Medical Informatics Assoc. 3(3): 224-233 (1996) - 1994
- [j1]Yiming Yang, Christopher G. Chute:
An Example-Based Mapping Method for Text Categorization and Retrieval. ACM Trans. Inf. Syst. 12(3): 252-277 (1994) - [c3]Yiming Yang, Christopher G. Chute, Geoffrey E. Atkin, Andrew Anda:
TREC-3 Retrieval Evaluation Using Expert Network. TREC 1994 - 1993
- [c2]Yiming Yang, Christopher G. Chute:
An Application of Least Squares Fit Mapping to Text Information Retrieval. SIGIR 1993: 281-290 - 1992
- [c1]Yiming Yang, Christopher G. Chute:
A Linear Least Squares Fit Mapping Method For Information Retrieval From Natural Language Texts. COLING 1992: 447-453
Coauthor Index
[c159] [j83] [j82] [c157] [c156] [j69] [j66] [j65] [j63] [c148] [j61] [j58] [c146] [c145] [c143] [c142] [c140] [c139] [c138] [c137] [c136] [j55] [c133] [c130] [c126] [c122] [c119] [j50] [j48] [c118] [c104] [c103] [c99] [c96] [c93] [j41] [j37] [c88] [c80] [c77] [c75] [c73] [c69] [j27] [c67] [c66] [c64] [c62] [j19] [j17] [c56] [c54] [c52]
Guergana K. Savova
aka: Guergana Savova
aka: Guergana Savova
Harold R. Solbrig
aka: Harold Solbrig
aka: Harold Solbrig
[j87] [j81] [i2] [j72] [j69] [j65] [j64] [j63] [c148] [j61] [c146] [c145] [c144] [c143] [c141] [c139] [c138] [c136] [c133] [c126] [c125] [c124] [c123] [c122] [c119] [j50] [j47] [c118] [c110] [c104] [c101] [c99] [c93] [j37] [c88] [c82] [c69] [j27] [c68] [c66] [c62] [c60] [j18] [c47] [c44] [c42] [c39] [c35] [c29] [j5] [c21]
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