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ORCIDJournal of Biomedical Informatics, Volume 42
Volume 42, Number 1, February 2009
- Sandro Tognazzo
, Bovo Emanuela, Fiore Anna Rita, Guzzinati Stefano, Monetti Daniele, Stocco Cramen Fiorella, Zambon Paola:
Probabilistic classifiers and automated cancer registration: An exploratory application. 1-10 - Robert Moskovitch, Yuval Shahar:
Vaidurya: A multiple-ontology, concept-based, context-sensitive clinical-guideline search engine. 11-21 - Xingwei Wang, Bin Zheng, Shibo Li, John J. Mulvihill, Marc C. Wood, Hong Liu:
Automated classification of metaphase chromosomes: Optimization of an adaptive computerized scheme. 22-31 - Jun Wang, Xiaobo Zhou, Fuhai Li, Pamela Bradley, Shih-Fu Chang, Norbert Perrimon, Stephen T. C. Wong:
An image score inference system for RNAi genome-wide screening based on fuzzy mixture regression modeling. 32-40 - Yan Chen, Huanying Gu, Yehoshua Perl, James Geller, Michael Halper:
Structural group auditing of a UMLS semantic type's extent. 41-52 - John M. Paulett, Curtis P. Langlotz:
Improving language models for radiology speech recognition. 53-58 - Qi Shen, Wei-Min Shi, Wei Kong:
New gene selection method for multiclass tumor classification by class centroid. 59-65 - Blanca Gallego, Vitali Sintchenko, Qinning Wang, Lester Hiley, Gwendolyn L. Gilbert, Enrico W. Coiera:
Biosurveillance of emerging biothreats using scalable genotype clustering. 66-73 - Luis Tari, Chitta Baral, Seungchan Kim:
Fuzzy c-means clustering with prior biological knowledge. 74-81 - Guilherme Del Fiol, Peter J. Haug:
Classification models for the prediction of clinicians' information needs. 82-89 - Xia Jiang, Garrick L. Wallstrom, Gregory F. Cooper, Michael M. Wagner:
Bayesian prediction of an epidemic curve. 90-99 - Xiaoming Wang, Lili Liu, James Fackenthal, Shelly Cummings, Oluwatobi I. Olopade, Kisha Hope, Jonathan C. Silverstein, Olufunmilayo I. Olopade:
Translational integrity and continuity: Personalized biomedical data integration. 100-112 - Petra Kralj Novak, Nada Lavrac, Dragan Gamberger, Antonija Krstacic:
CSM-SD: Methodology for contrast set mining through subgroup discovery. 113-122 - Spencer S. Jones, R. Scott Evans, Todd L. Allen, Alun Thomas, Peter J. Haug, Shari J. Welch, Gregory L. Snow:
A multivariate time series approach to modeling and forecasting demand in the emergency department. 123-139 - Costas P. Exarchos, Costas Papaloukas, Themis P. Exarchos, Anastassios N. Troganis, Dimitrios I. Fotiadis:
Prediction of cis/trans isomerization using feature selection and support vector machines. 140-149 - Catalina Martínez-Costa, Marcos Menárguez Tortosa, Jesualdo Tomás Fernández-Breis, José Alberto Maldonado:
A model-driven approach for representing clinical archetypes for Semantic Web environments. 150-164 - Mor Peleg, Nuaman Asbeh, Tsvi Kuflik, Mitchell Schertz:
Onto-clust - A methodology for combining clustering analysis and ontological methods for identifying groups of comorbidities for developmental disorders. 165-175
- Vimla L. Patel, Nicole A. Yoskowitz, José F. Arocha, Edward H. Shortliffe:
Cognitive and learning sciences in biomedical and health instructional design: A review with lessons for biomedical informatics education. 176-197
Volume 42, Number 2, April 2009
- Edward H. Shortliffe, Andrea Califano, Lawrence Hunter:
New JBI emphasis on translational bioinformatics. 199-200
- Efrat German, Akiva Leibowitz, Yuval Shahar:
An architecture for linking medical decision-support applications to clinical databases and its evaluation. 203-218 - Ingrid Petric, Tanja Urbancic, Bojan Cestnik, Marta Macedoni-Luksic:
Literature mining method RaJoLink for uncovering relations between biomedical concepts. 219-227 - Saliha Durmus Tekir, Kazim Yalçin Arga, Kutlu Ö. Ülgen:
Drug targets for tumorigenesis: Insights from structural analysis of EGFR signaling network. 228-236 - Kenneth J. Turner:
Abstraction and analysis of clinical guidance trees. 237-250 - John Lakoumentas, John Drakos, Marina Karakantza, George Nikiforidis, George Sakellaropoulos:
Bayesian clustering of flow cytometry data for the diagnosis of B-Chronic Lymphocytic Leukemia. 251-261 - Suzhen Wang, Jielai Xia, Lili Yu, Chanjuan Li, Li Xu, Liang Zheng:
Realization of simulations for blinded internal pilot study based on web. 262-271 - Itay Segal, Yuval Shahar:
A distributed system for support and explanation of shared decision-making in the prenatal testing domain. 272-286 - Sangeeta B. English, Shou-Ching Shih, Marco Ramoni, Lois E. Smith, Atul J. Butte:
Use of Bayesian networks to probabilistically model and improve the likelihood of validation of microarray findings by RT-PCR. 287-295 - Gloria Díaz, Fabio A. González, Eduardo Romero:
A semi-automatic method for quantification and classification of erythrocytes infected with malaria parasites in microscopic images. 296-307 - Bilal A. Ahmed, Michael E. Matheny, Phillip L. Rice, John R. Clarke, Omolola Ogunyemi:
A comparison of methods for assessing penetrating trauma on retrospective multi-center data. 308-316 - Geva Vashitz, Joachim Meyer, Yisrael Parmet, Roni Peleg, Dan Goldfarb, Avi Porath, Harel Gilutz:
Defining and measuring physicians' responses to clinical reminders. 317-326 - Meredith Nahm, Jiajie Zhang:
Operationalization of the UFuRT methodology for usability analysis in the clinical research data management domain. 327-333 - Adam Wright, David W. Bates, Blackford Middleton, Tonya Hongsermeier, Vipul Kashyap, Sean M. Thomas, Dean F. Sittig:
Creating and sharing clinical decision support content with Web 2.0: Issues and examples. 334-346 - Dominikus Herzberg, Nicola Marsden, Peter Kübler, Corinna Leonhardt, Sabine Thomanek, Hartmut Jung, Annette Becker:
Specifying computer-based counseling systems in health care: A new approach to user-interface and interaction design. 347-355 - Laritza M. Taft, R. Scott Evans, Chi-Ren Shyu, Marlene J. Egger, Nitesh V. Chawla, Joyce A. Mitchell, Sidney N. Thornton, Bruce E. Bray, Michael W. Varner:
Countering imbalanced datasets to improve adverse drug event predictive models in labor and delivery. 356-364 - Bill Andreopoulos, Aijun An, Xiaogang Wang, Dirk Labudde:
Efficient layered density-based clustering of categorical data. 365-376 - Paul A. Harris, Robert Taylor, Robert Thielke, Jonathon Payne, Nathaniel Gonzalez, Jose G. Conde:
Research electronic data capture (REDCap) - A metadata-driven methodology and workflow process for providing translational research informatics support. 377-381 - Martti Tolvanen, Pauli J. Ojala, Petri Törönen, Heidi Anderson, Jukka Partanen, Hannu Turpeinen:
Interspliced transcription chimeras: Neglected pathological mechanism infiltrating gene accession queries? 382-389
- Trevor Cohen, Dominic Widdows:
Empirical distributional semantics: Methods and biomedical applications. 390-405
Volume 42, Number 3, June 2009
- James Geller, Yehoshua Perl, Michael Halper, Ronald Cornet:
Special Issue on Auditing of Terminologies. 407-411
- Xinxin Zhu, Jungwei Fan, David M. Baorto, Chunhua Weng, James J. Cimino:
A review of auditing methods applied to the content of controlled biomedical terminologies. 413-425
- Lowell Vizenor, Olivier Bodenreider, Alexa T. McCray:
Auditing associative relations across two knowledge sources. 426-439 - Fleur Mougin, Olivier Bodenreider, Anita Burgun:
Analyzing polysemous concepts from a clinical perspective: Application to auditing concept categorization in the UMLS. 440-451 - Yan Chen, Huanying Helen Gu, Yehoshua Perl, James Geller:
Structural group-based auditing of missing hierarchical relationships in UMLS. 452-467 - C. Paul Morrey, James Geller, Michael Halper, Yehoshua Perl:
The Neighborhood Auditing Tool: A hybrid interface for auditing the UMLS. 468-489 - Geraldine Wade, S. Trent Rosenbloom:
The impact of SNOMED CT revisions on a mapped interface terminology: Terminology development and implementation issues. 490-493 - David M. Baorto, Li Li, James J. Cimino:
Practical experience with the maintenance and auditing of a large medical ontology. 494-503 - Guoqian Jiang, Jyotishman Pathak, Christopher G. Chute:
Formalizing ICD coding rules using Formal Concept Analysis. 504-517 - Werner Ceusters:
Applying evolutionary terminology auditing to the Gene Ontology. 518-529 - Sherri de Coronado, Lawrence W. Wright, Gilberto Fragoso, Margaret W. Haber, Elizabeth A. Hahn-Dantona, Francis W. Hartel, Sharon L. Quan, Tracy Safran, Nicole Thomas, Lori Whiteman:
The NCI Thesaurus quality assurance life cycle. 530-539 - Ira J. Kalet, José L. V. Mejino Jr., Vania Wang, Mark Whipple, James F. Brinkley:
Content-specific auditing of a large scale anatomy ontology. 540-549 - Huanying Helen Gu, Duo Helen Wei, José L. V. Mejino Jr., Gai Elhanan:
Relationship auditing of the FMA ontology. 550-557 - Olivier Bodenreider, Lee B. Peters:
A graph-based approach to auditing RxNorm. 558-570 - James J. Cimino, Terry F. Hayamizu, Olivier Bodenreider, Brian Davis, Grace A. Stafford, Martin Ringwald:
The caBIG terminology review process. 571-580
Volume 42, Number 4, August 2009
- David R. Kaufman, Jenia Pevzner, Martha Rodriguez, James J. Cimino, Susana Ebner, Lesley Fields, Vilma Moreno, Christina McGuiness, Ruth S. Weinstock, Steven Shea, Justin Starren:
Understanding workflow in telehealth video visits: Observations from the IDEATel project. 581-592 - Kanav Kahol, Mithra Vankipuram, Marshall L. Smith:
Cognitive simulators for medical education and training. 593-604 - Dominik Lutter, Thomas Langmann, Peter Ugocsai, C. Moehle, E. Seibold, W. D. Splettstoesser, Peter Gruber, Elmar Wolfgang Lang, Gerd Schmitz:
Analyzing time-dependent microarray data using independent component analysis derived expression modes from human macrophages infected with F. tularensis holartica. 605-611 - Julie Bourbeillon, Catherine Garbay, Françoise Giroud:
Mass data exploration in oncology: An information synthesis approach. 612-623 - Christian Fiegl, Carsten Pontow:
Online scheduling of pick-up and delivery tasks in hospitals. 624-632 - Meliha Yetisgen-Yildiz, Wanda Pratt:
A new evaluation methodology for literature-based discovery systems. 633-643 - Eugenia G. Giannopoulou, Spiros D. Garbis, Antonia Vlahou, Sofia Kossida, George Lepouras, Elias S. Manolakos:
Proteomic Feature Maps: A new visualization approach in proteomics analysis. 644-653 - Hong-Qiang Wang, Hau-San Wong, Hailong Zhu, Timothy T. C. Yip:
A neural network-based biomarker association information extraction approach for cancer classification. 654-666 - Ayse P. Gurses, Yan Xiao, Peter Fu-Ming Hu:
User-designed information tools to support communication and care coordination in a trauma hospital. 667-677 - Len Y. Tanaka, Jorge R. Herskovic, M. Sriram Iyengar, Elmer V. Bernstam:
Sequential result refinement for searching the biomedical literature. 678-684 - Bing Liu, Jiuyong Li, Anna Tsykin:
Discovery of functional miRNA-mRNA regulatory modules with computational methods. 685-691 - Louise Deléger, Magnus Merkel, Pierre Zweigenbaum:
Translating medical terminologies through word alignment in parallel text corpora. 692-701 - Eric S. Hall, Mollie R. Poynton, Scott P. Narus, Spencer S. Jones, R. Scott Evans, Michael W. Varner, Sidney N. Thornton:
Patient-level analysis of outcomes using structured labor and delivery data. 702-709 - Anália Lourenço, Rafael Carreira, Sónia Carneiro, Paulo Maia, Daniel Glez-Peña, Florentino Fdez-Riverola, Eugénio C. Ferreira, Isabel Rocha, Miguel Rocha:
@Note: A workbench for Biomedical Text Mining. 710-720 - Melanie Osl, Stephan Dreiseitl, F. Cerqueira, Michael Netzer, Bernhard Pfeifer, Christian Baumgartner:
Demoting redundant features to improve the discriminatory ability in cancer data. 721-725 - Zhiping Wang, Seongho Kim, Sara K. Quinney, Yingying Guo, Stephen D. Hall, Luis M. Rocha, Lang Li:
Literature mining on pharmacokinetics numerical data: A feasibility study. 726-735 - Mor Peleg, Judith Somekh, Dov Dori:
A methodology for eliciting and modeling exceptions. 736-747
- Rashmi Kandwal, P. K. Garg, R. D. Garg:
Health GIS and HIV/AIDS studies: Perspective and retrospective. 748-755
Volume 42, Number 5, October 2009
- Wendy Webber Chapman, K. Bretonnel Cohen:
Current issues in biomedical text mining and natural language processing. 757-759
- Dina Demner-Fushman, Wendy Webber Chapman, Clement J. McDonald:
What can natural language processing do for clinical decision support? 760-772
- Son Doan, Ai Kawazoe, Mike Conway, Nigel Collier:
Towards role-based filtering of disease outbreak reports. 773-780 - Joshua C. Denny, Lisa Bastarache, Elizabeth Ann Sastre, Anderson Spickard III:
Tracking medical students' clinical experiences using natural language processing. 781-789 - Grace Yuet-Chee Chung:
Towards identifying intervention arms in randomized controlled trials: Extracting coordinating constructions. 790-800 - Marcelo Fiszman, Dina Demner-Fushman, Halil Kilicoglu, Thomas C. Rindflesch:
Automatic summarization of MEDLINE citations for evidence-based medical treatment: A topic-oriented evaluation. 801-813 - Aurélie Névéol, Sonya E. Shooshan, Susanne M. Humphrey, James G. Mork, Alan R. Aronson:
A recent advance in the automatic indexing of the biomedical literature. 814-823 - Lam C. Tsoi, Ravi Patel, Wenle Zhao, W. Jim Zheng:
Text-mining approach to evaluate terms for ontology development. 824-830 - Zhiyong Lu, W. John Wilbur:
Improving accuracy for identifying related PubMed queries by an integrated approach. 831-838 - Henk Harkema, John N. Dowling, Tyler Thornblade, Wendy Webber Chapman:
ConText: An algorithm for determining negation, experiencer, and temporal status from clinical reports. 839-851 - Laura Rimell, Stephen Clark:
Porting a lexicalized-grammar parser to the biomedical domain. 852-865 - Man Lan, Chew Lim Tan, Jian Su:
Feature generation and representations for protein-protein interaction classification. 866-872 - Ira Goldstein, Özlem Uzuner:
Specializing for predicting obesity and its co-morbidities. 873-886 - Hui Yang, John A. Keane, Casey M. Bergman, Goran Nenadic:
Assigning roles to protein mentions: The case of transcription factors. 887-894 - Lawrence H. Smith, W. John Wilbur:
The value of parsing as feature generation for gene mention recognition. 895-904 - Sujan Kumar Saha, Sudeshna Sarkar, Pabitra Mitra:
Feature selection techniques for maximum entropy based biomedical named entity recognition. 905-911 - Mei-Yu Hsiao, Chien-Chung Chen, Jyh-Horng Chen:
Using UMLS to construct a generalized hierarchical concept-based dictionary of brain functions for information extraction from the fMRI literature. 912-922 - Agnieszka Mykowiecka, Malgorzata Marciniak, Anna Kupsc:
Rule-based information extraction from patients' clinical data. 923-936 - Anni Coden, Guergana K. Savova, Igor L. Sominsky, Michael A. Tanenblatt, James J. Masanz, Karin Schuler, James W. Cooper, Wei Guan, Piet C. de Groen:
Automatically extracting cancer disease characteristics from pathology reports into a Disease Knowledge Representation Model. 937-949 - Angus Roberts, Robert J. Gaizauskas, Mark Hepple, George Demetriou, Yikun Guo, Ian Roberts, Andrea Setzer:
Building a semantically annotated corpus of clinical texts. 950-966 - Carlos Cano, Thomas Monaghan, Armando Blanco, Dennis P. Wall, Leonid Peshkin:
Collaborative text-annotation resource for disease-centered relation extraction from biomedical text. 967-977
Volume 42, Number 6, December 2009
- Richard D. Boyce, Carol Collins, John R. Horn, Ira Kalet:
Computing with evidence: Part I: A drug-mechanism evidence taxonomy oriented toward confidence assignment. 979-989 - Richard D. Boyce, Carol Collins, John R. Horn, Ira Kalet:
Computing with evidence: Part II: An evidential approach to predicting metabolic drug-drug interactions. 990-1003 - Sookyung Hyun, Stephen B. Johnson, Peter D. Stetson, Suzanne Bakken:
Development and evaluation of nursing user interface screens using multiple methods. 1004-1012 - Matteo Paoletti, Gianna Camiciottoli, Eleonora Meoni, Francesca Bigazzi, Lucia Cestelli, Massimo Pistolesi, Carlo Marchesi:
Explorative data analysis techniques and unsupervised clustering methods to support clinical assessment of Chronic Obstructive Pulmonary Disease (COPD) phenotypes. 1013-1021 - Rajat K. De, Anupam Ghosh:
Interval based fuzzy systems for identification of important genes from microarray gene expression data: Application to carcinogenic development. 1022-1028 - George Ölund, Anders Brinne, Pontus Lindqvist, Jan-Eric Litton:
Unleashing genotypes in epidemiology - A novel method for managing high throughput information. 1029-1034 - Hua Min, Frank J. Manion, Elizabeth Goralczyk, Yu-Ning Wong, Eric A. Ross, J. Robert Beck:
Integration of prostate cancer clinical data using an ontology. 1035-1045 - Serhan Tatar, Ilyas Cicekli:
Two learning approaches for protein name extraction. 1046-1055
- Sheena Xin Liu:
Symmetry and asymmetry analysis and its implications to computer-aided diagnosis: A review of the literature. 1056-1064
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