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ORCIDLucila Ohno-Machado
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- affiliation: University of California San Diego, Division of Medial Informatics
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2020 – today
- 2024
[j185]Roger Lacson
, Yufei Yu, Tsung-Ting Kuo, Lucila Ohno-Machado:
Biomedical blockchain with practical implementations and quantitative evaluations: a systematic review. J. Am. Medical Informatics Assoc. 31(6): 1423-1435 (2024)- [j184]Thomas J. S. Durant, Elizabeth Knight, Brent G. Nelson, Sarah Dudgeon, Seung J. Lee, Dominic Walliman, Hobart P. Young, Lucila Ohno-Machado, Wade L. Schulz:
A primer for quantum computing and its applications to healthcare and biomedical research. J. Am. Medical Informatics Assoc. 31(8): 1774-1784 (2024) - [i8]Aidan Gilson, Xuguang Ai, Qianqian Xie, Sahana Srinivasan, Krithi Pushpanathan, Maxwell B. Singer, Jimin Huang, Hyunjae Kim, Erping Long, Peixing Wan, Luciano V. Del Priore, Lucila Ohno-Machado, Hua Xu, Dianbo Liu, Ron A. Adelman, Yih-Chung Tham, Qingyu Chen:
Language Enhanced Model for Eye (LEME): An Open-Source Ophthalmology-Specific Large Language Model. CoRR abs/2410.03740 (2024) - 2023
- [j183]Brad Morse, Katherine K. Kim, Zixuan Xu, Cynthia G. Matsumoto, Lisa M. Schilling, Lucila Ohno-Machado, Selene S. Mak, Michelle S. Keller:
Patient and researcher stakeholder preferences for use of electronic health record data: a qualitative study to guide the design and development of a platform to honor patient preferences. J. Am. Medical Informatics Assoc. 30(6): 1137-1149 (2023) - [j182]Tsung-Ting Kuo, Anh Pham, Maxim E. Edelson, Jihoon Kim, Jason Chan, Yash Gupta, Lucila Ohno-Machado, David M. Anderson, Chandrasekar Balacha, Tyler Bath, Sally L. Baxter, Andrea Becker-Pennrich, Douglas S. Bell, Elmer V. Bernstam, Ngan Chau, Michele E. Day, Jason N. Doctor, Scott L. DuVall, Robert El-Kareh, Renato Florian, Robert W. Follett, Benjamin P. Geisler, Alessandro Ghigi, Assaf Gottlieb, Ludwig Christian G. Hinske, Zhaoxian Hu, Diana Ir, Xiaoqian Jiang, Katherine K. Kim, Tara K. Knight, Jejo D. Koola, Nelson Lee, Ulrich Mansmann, Michael E. Matheny, Daniella Meeker, Zongyang Mou, Larissa Neumann, Nghia H. Nguyen, Nick Anderson, Eunice Park, Paulina Paul, Mark J. Pletcher, Kai W. Post, Clemens Rieder, Clemens Scherer, Lisa M. Schilling, Andrey Soares, Spencer L. SooHoo, Ekin Soysal, Steven Covington, Brian Tep, Brian Toy, Baocheng Wang, Zhen R. Wu, Hua Xu, Yong K. Choi, Kai Zheng, Yujia Zhou, Rachel A Zucker:
Blockchain-enabled immutable, distributed, and highly available clinical research activity logging system for federated COVID-19 data analysis from multiple institutions. J. Am. Medical Informatics Assoc. 30(6): 1167-1178 (2023) - [j181]William W. Stead, Randolph A. Miller, Lucila Ohno-Machado, Suzanne Bakken:
JAMIA at 30: looking back and forward. J. Am. Medical Informatics Assoc. 31(1): 1-9 (2023) - [j180]Lucila Ohno-Machado, Xiaoqian Jiang, Tsung-Ting Kuo, Shiqiang Tao, Luyao Chen, Pritham Ram, Guo-Qiang Zhang, Hua Xu:
A hierarchical strategy to minimize privacy risk when linking "De-identified" data in biomedical research consortia. J. Biomed. Informatics 139: 104322 (2023) - 2022
- [j179]Tsung-Ting Kuo, Lucila Ohno-Machado:
NLM's sponsorship of research in biomedical informatics (1985-2016). Inf. Serv. Use 42(1): 61-70 (2022) - [j178]Christoph U. Lehmann, Patricia F. Brennan, Don E. Detmer, Gretchen P. Jackson, Lucila Ohno-Machado, Charles Safran, Jeffrey J. Williamson, Edward H. Shortliffe:
A tribute to Karen Greenwood and her contributions to the American Medical Informatics Association. J. Am. Medical Informatics Assoc. 29(5): 1011-1013 (2022) - [j177]Cynthia Triplett, Burgundy J. Fletcher, Riley Taitingfong, Ying Zhang, Tauqeer Ali, Lucila Ohno-Machado, Cinnamon S. Bloss:
Codesigning a community-based participatory research project to assess tribal perspectives on privacy and health data sharing: A report from the Strong Heart Study. J. Am. Medical Informatics Assoc. 29(6): 1120-1127 (2022) - [j176]Fatemeh Amrollahi, Supreeth Prajwal Shashikumar, Angela Meier, Lucila Ohno-Machado, Shamim Nemati, Gabriel Wardi:
Inclusion of social determinants of health improves sepsis readmission prediction models. J. Am. Medical Informatics Assoc. 29(7): 1263-1270 (2022) - [j175]Ken Wiley, Laura Findley, Madison Goldrich, Tejinder K. Rakhra-Burris, Ana Stevens, Pamela Williams, Carol J. Bult, Rex L. Chisholm, Patricia Deverka, Geoffrey S. Ginsburg, Eric D. Green, Gail P. Jarvik, George A. Mensah, Erin Ramos, Mary V. Relling, Dan M. Roden, Robb Rowley, Gil Alterovitz, Samuel J. Aronson, Lisa Bastarache, James J. Cimino, Erin L. Crowgey, Guilherme Del Fiol, Robert R. Freimuth, Mark A. Hoffman, Janina M. Jeff, Kevin B. Johnson, Kensaku Kawamoto, Subha Madhavan, Eneida A. Mendonça, Lucila Ohno-Machado, Siddharth Pratap, Casey Overby Taylor, Marylyn D. Ritchie, Nephi Walton, Chunhua Weng, Teresa Zayas-Cabán, Teri A. Manolio, Marc S. Williams:
A research agenda to support the development and implementation of genomics-based clinical informatics tools and resources. J. Am. Medical Informatics Assoc. 29(8): 1342-1349 (2022) - [j174]Tsung-Ting Kuo, Xiaoqian Jiang, Haixu Tang, XiaoFeng Wang, Arif Ozgun Harmanci, Miran Kim, Kai W. Post, Diyue Bu, Tyler Bath, Jihoon Kim, Weijie Liu, Hongbo Chen, Lucila Ohno-Machado:
The evolving privacy and security concerns for genomic data analysis and sharing as observed from the iDASH competition. J. Am. Medical Informatics Assoc. 29(12): 2182-2190 (2022) - [j173]Andrea H. Ramirez, Lina M. Sulieman, David J. Schlueter, Alese E. Halvorson, Jun Qian, Francis Ratsimbazafy, Roxana Loperena-Cortes, Kelsey R. Mayo, Melissa A. Basford, Nicole Deflaux, Karthik Muthuraman, Karthik Natarajan, Abel N. Kho, Hua Xu, Consuelo H. Wilkins, Hoda Anton-Culver, Eric Boerwinkle, Mine Cicek, Cheryl R. Clark, Elizabeth Cohn, Lucila Ohno-Machado, Sheri D. Schully, Brian K. Ahmedani, Maria Argos, Robert M. Cronin, Christopher J. O'Donnell, Mona Fouad, David B. Goldstein, Philip Greenland, Scott J. Hebbring, Elizabeth W. Karlson, Parinda Khatri, Bruce Korf, Jordan W. Smoller, Stephen Sodeke, John Wilbanks, Justin Hentges, Stephen Mockrin, Christopher Lunt, Stephanie A. Devaney, Kelly Gebo, Joshua C. Denny, Robert J. Carroll, David Glazer, Paul A. Harris, George Hripcsak, Anthony A. Philippakis, Dan M. Roden:
The All of Us Research Program: Data quality, utility, and diversity. Patterns 3(8): 100570 (2022) - [j172]Wenrui Dai, Xiaoqian Jiang, Luca Bonomi, Yong Li, Hongkai Xiong, Lucila Ohno-Machado:
VERTICOX: Vertically Distributed Cox Proportional Hazards Model Using the Alternating Direction Method of Multipliers. IEEE Trans. Knowl. Data Eng. 34(2): 996-1010 (2022) - [c119]Sharon E. Davis, Henry Ssemaganda, Jejo Koola, Jialin Mao, Dax M. Westerman, Theodore Speroff, Usha Govindarajulu, Craig Ramsay, Lucila Ohno-Machado, Frederic S. Resnic, Michael E. Matheny:
A Framework for Generating Synthetic Clinical Datasets with Learning Effects to Support Methods Development and Validation. AMIA 2022 - [c118]Jejo D. Koola, Jialin Mao, Sharon E. Davis, Henry Ssemaganda, Dax M. Westerman, Lucila Ohno-Machado, Frederic S. Resnic, Michael E. Matheny:
A Framework for Detecting Medical Device Safety Signals Confounded by Learning Effects Using Machine Learning. AMIA 2022 - [c117]Tsung-Ting Kuo, Xiaoqian Jiang, Hua Xu, Li Xiong, Lucila Ohno-Machado:
Existing and emerging privacy challenges and solutions for federated data coordination. AMIA 2022 - [c116]Henry Ssemaganda, Frederic S. Resnic, Sharon E. Davis, Usha Govindarajulu, Jejo Koola, Jialin Mao, Dax M. Westerman, Theodore Speroff, Craig Ramsay, Art Sedrakyan, Lucila Ohno-Machado, Michael E. Matheny:
Disentangling and Characterizing Device Safety Signals and Learning Effects. AMIA 2022 - [c115]Shiqiang Tao, Wei-Chun Chou, Jianfu Li, Jingcheng Du, Pritham Ram, Rashmie Abeysinghe, Hua Xu, Xiaoqian Jiang, Peter W. Rose, Lucila Ohno-Machado, Guo-Qiang Zhang:
IMI-CDE: an interactive interface for collaborative mapping of study variables to common data elements. ICHI 2022: 465-468 - 2021
- [j171]Xu Zuo, Yong Chen, Lucila Ohno-Machado, Hua Xu:
How do we share data in COVID-19 research? A systematic review of COVID-19 datasets in PubMed Central Articles. Briefings Bioinform. 22(2): 800-811 (2021) - [j170]Tsung-Ting Kuo, Tyler Bath, Shuaicheng Ma, Nicholas D. Pattengale, Meng Yang, Yang Cao, Corey M. Hudson, Jihoon Kim, Kai W. Post, Li Xiong, Lucila Ohno-Machado:
Benchmarking blockchain-based gene-drug interaction data sharing methods: A case study from the iDASH 2019 secure genome analysis competition blockchain track. Int. J. Medical Informatics 154: 104559 (2021) - [j169]Subha Madhavan, Lisa Bastarache, Jeffrey S. Brown, Atul J. Butte, David A. Dorr, Peter J. Embí, Charles P. Friedman, Kevin B. Johnson, Jason H. Moore, Isaac S. Kohane, Philip R. O. Payne, Jessica D. Tenenbaum, Mark G. Weiner, Adam B. Wilcox, Lucila Ohno-Machado:
Use of electronic health records to support a public health response to the COVID-19 pandemic in the United States: a perspective from 15 academic medical centers. J. Am. Medical Informatics Assoc. 28(2): 393-401 (2021) - [j168]Jihoon Kim, Larissa Neumann, Paulina Paul, Michele E. Day, Michael Aratow, Douglas S. Bell, Jason N. Doctor, Ludwig Christian G. Hinske, Xiaoqian Jiang, Katherine K. Kim, Michael E. Matheny, Daniella Meeker, Mark J. Pletcher, Lisa M. Schilling, Spencer L. SooHoo, Hua Xu, Kai Zheng, Lucila Ohno-Machado:
Privacy-protecting, reliable response data discovery using COVID-19 patient observations. J. Am. Medical Informatics Assoc. 28(8): 1765-1776 (2021) - [j167]Yingxiang Huang, Xiaoqian Jiang, Rodney A. Gabriel, Lucila Ohno-Machado:
Calibrating predictive model estimates in a distributed network of patient data. J. Biomed. Informatics 117: 103758 (2021) - [c114]Xiaoqian Jiang, Luca Bonomi, Jaideep Vaidya, Li Xiong, Lucila Ohno-Machado:
Privacy-Preserving Federated Biomedical Data Analysis. AMIA 2021 - [c113]Anh Pham, Robert El-Kareh, Lucila Ohno-Machado, Tsung-Ting Kuo:
Early Prediction of Positive Clostridioides Difficile Test Results. AMIA 2021 - 2020
- [j166]Sally L. Baxter, Helena E. Gali, Michael F. Chiang, Michelle R. Hribar, Lucila Ohno-Machado, Robert El-Kareh, Abigail E. Huang, Heather E. Chen, Andrew Camp, Don O. Kikkawa, Bobby S. Korn, Jeffrey E. Lee, Christopher A. Longhurst, Marlene Millen:
Promoting Quality Face-to-Face Communication during Ophthalmology Encounters in the Electronic Health Record Era. Appl. Clin. Inform. 11(01): 130-141 (2020) - [j165]Jason N. Doctor, Jaideep Vaidya, Xiaoqian Jiang, Shuang Wang, Lisa M. Schilling, Toan Ong, Michael E. Matheny, Lucila Ohno-Machado, Daniella Meeker:
Efficient determination of equivalence for encrypted data. Comput. Secur. 97: 101939 (2020) - [j164]Luca Bonomi, Xiaoqian Jiang, Lucila Ohno-Machado:
Protecting patient privacy in survival analyses. J. Am. Medical Informatics Assoc. 27(3): 366-375 (2020) - [j163]Yingxiang Huang, Wentao Li, Fima Macheret, Rodney A. Gabriel, Lucila Ohno-Machado:
A tutorial on calibration measurements and calibration models for clinical prediction models. J. Am. Medical Informatics Assoc. 27(4): 621-633 (2020) - [j162]Tsung-Ting Kuo, Rodney A. Gabriel, Krishna R. Cidambi, Lucila Ohno-Machado:
EXpectation Propagation LOgistic REgRession on permissioned blockCHAIN (ExplorerChain): decentralized online healthcare/genomics predictive model learning. J. Am. Medical Informatics Assoc. 27(5): 747-756 (2020) - [j161]Xiao Dong, Jianfu Li, Ekin Soysal, Jiang Bian, Scott L. DuVall, Elizabeth Hanchrow, Hongfang Liu, Kristine E. Lynch, Michael E. Matheny, Karthik Natarajan, Lucila Ohno-Machado, Serguei Pakhomov, Ruth Madeleine Reeves, Amy M. Sitapati, Swapna Abhyankar, Theresa Cullen, Jami Deckard, Xiaoqian Jiang, Robert Murphy, Hua Xu:
COVID-19 TestNorm: A tool to normalize COVID-19 testing names to LOINC codes. J. Am. Medical Informatics Assoc. 27(9): 1437-1442 (2020) - [j160]Riley Taitingfong, Cinnamon S. Bloss, Cynthia Triplett, Julie Cakici, Nanibaa' Garrison, Shelley Cole, Julie A. Stoner, Lucila Ohno-Machado:
A systematic literature review of Native American and Pacific Islanders' perspectives on health data privacy in the United States. J. Am. Medical Informatics Assoc. 27(12): 1987-1998 (2020) - [j159]Miran Kim, Junghye Lee, Lucila Ohno-Machado, Xiaoqian Jiang:
Secure and Differentially Private Logistic Regression for Horizontally Distributed Data. IEEE Trans. Inf. Forensics Secur. 15: 695-710 (2020) - [c112]Jihoon Kim, Paulina Paul, Pravina Kota, Yu R. Park, Julie A. Stoner, Wenyu Wang, Ying Zhang, Elisa Lee, Lucila Ohno-Machado:
Longitudinal Cohort Data Transformation Based on a Common Data Model and Metadata Standards: Examples from the Strong Heart Study. AMIA 2020
2010 – 2019
- 2019
- [j158]Tsung-Ting Kuo, Rodney A. Gabriel, Lucila Ohno-Machado:
Fair compute loads enabled by blockchain: sharing models by alternating client and server roles. J. Am. Medical Informatics Assoc. 26(5): 392-403 (2019) - [j157]Olivier Harismendy, Jihoon Kim, Xiaojun Xu, Lucila Ohno-Machado:
Evaluating and sharing global genetic ancestry in biomedical datasets. J. Am. Medical Informatics Assoc. 26(5): 457-461 (2019) - [j156]Tsung-Ting Kuo, Hugo Zavaleta Rojas, Lucila Ohno-Machado:
Comparison of blockchain platforms: a systematic review and healthcare examples. J. Am. Medical Informatics Assoc. 26(5): 462-478 (2019) - [c111]Luca Bonomi, Xiaoqian Jiang, Lucila Ohno-Machado:
Protecting Patient Privacy in Survival Analyses. AMIA 2019 - [c110]Yong Kyung Choi, Javier E. Lopez, Daniella Meeker, Lucila Ohno-Machado, Katherine K. Kim:
Engaging heart failure patients from a clinical data research network: A survey on willingness to participate in different types of research. AMIA 2019 - [c109]Xiaoqian Jiang, Luca Bonomi, Lucila Ohno-Machado:
VERTICOX: Vertically Distributed Cox Proportional Hazards Model. AMIA 2019 - [c108]Tsung-Ting Kuo, Amar Das, Kim Augustine, Peng Dana Zhang, Lucila Ohno-Machado:
Current Applications of Blockchain Technology in Biomedical Research and Healthcare. AMIA 2019 - [e1]Lucila Ohno-Machado, Brigitte Séroussi:
MEDINFO 2019: Health and Wellbeing e-Networks for All - Proceedings of the 17th World Congress on Medical and Health Informatics, Lyon, France, 25-30 August 2019. Studies in Health Technology and Informatics 264, IOS Press 2019, ISBN 978-1-64368-002-6 [contents] - 2018
- [j155]Wei Wei, Zhanglong Ji, Yupeng He, Kai Zhang, Yuanchi Ha, Qi Li, Lucila Ohno-Machado:
Finding relevant biomedical datasets: the UC San Diego solution for the bioCADDIE Retrieval Challenge. Database J. Biol. Databases Curation 2018: bay017 (2018) - [j154]Feng Chen, Xiaoqian Jiang, Shuang Wang, Lisa M. Schilling, Daniella Meeker, Toan Ong, Michael E. Matheny, Jason N. Doctor, Lucila Ohno-Machado, Jaideep Vaidya:
Perfectly Secure and Efficient Two-Party Electronic-Health-Record Linkage. IEEE Internet Comput. 22(2): 32-41 (2018) - [j153]Lucila Ohno-Machado:
Special Focus on Biomedical Data Science. J. Am. Medical Informatics Assoc. 25(1): 1 (2018) - [j152]Patricia Flatley Brennan, Michael F. Chiang, Lucila Ohno-Machado:
Biomedical informatics and data science: evolving fields with significant overlap. J. Am. Medical Informatics Assoc. 25(1): 2-3 (2018) - [j151]Lucila Ohno-Machado:
Informatics systems for health care providers, patients, and families. J. Am. Medical Informatics Assoc. 25(2): 110 (2018) - [j150]Lucila Ohno-Machado:
Clinical research informatics: a growing subspecialization of biomedical informatics. J. Am. Medical Informatics Assoc. 25(3): 223 (2018) - [j149]Xiaoling Chen, Anupama E. Gururaj, Ibrahim Burak Özyurt, Ruiling Liu, Ergin Soysal, Trevor Cohen, Firat Tiryaki, Yueling Li, Nansu Zong, Min Jiang, Deevakar Rogith, Mandana Salimi, Hyeon-Eui Kim, Philippe Rocca-Serra, Alejandra N. González-Beltrán, Claudiu Farcas, Todd Johnson, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Ian Fore, Lucila Ohno-Machado, Jeffrey S. Grethe, Hua Xu:
DataMed - an open source discovery index for finding biomedical datasets. J. Am. Medical Informatics Assoc. 25(3): 300-308 (2018) - [j148]Ram Dixit, Deevakar Rogith, Vidya Narayana, Mandana Salimi, Anupama E. Gururaj, Lucila Ohno-Machado, Hua Xu, Todd R. Johnson:
User needs analysis and usability assessment of DataMed - a biomedical data discovery index. J. Am. Medical Informatics Assoc. 25(3): 337-344 (2018) - [j147]Lucila Ohno-Machado:
Enabling patients to be active participants in healthcare via informatics interventions. J. Am. Medical Informatics Assoc. 25(4): 369 (2018) - [j146]Lucila Ohno-Machado:
Clinical decision support: informatics interventions for better patient care. J. Am. Medical Informatics Assoc. 25(5): 457 (2018) - [j145]Lucila Ohno-Machado:
Electronic health records and health information exchange. J. Am. Medical Informatics Assoc. 25(6): 617 (2018) - [j144]Lucila Ohno-Machado:
The role of informatics in promoting patient safety. J. Am. Medical Informatics Assoc. 25(7): 773 (2018) - [j143]Lucila Ohno-Machado:
Informatics for all: from provider- to patient-based applications that can include family and friends. J. Am. Medical Informatics Assoc. 25(8): 923 (2018) - [j142]Lucila Ohno-Machado:
Sharing data from electronic health records within, across, and beyond healthcare institutions: Current trends and perspectives. J. Am. Medical Informatics Assoc. 25(9): 1113 (2018) - [j141]Lucila Ohno-Machado:
Data science and artificial intelligence to improve clinical practice and research. J. Am. Medical Informatics Assoc. 25(10): 1273 (2018) - [j140]Lucila Ohno-Machado:
Clinical informatics applications of medication reconciliation, decision support systems, and online portal patient-provider communications. J. Am. Medical Informatics Assoc. 25(11): 1431 (2018) - [j139]Lucila Ohno-Machado:
A diversified informatics portfolio covering health sciences and healthcare. J. Am. Medical Informatics Assoc. 25(12): 1583 (2018) - [j138]Lucila Ohno-Machado:
Reflections on the journey of editing a scientific journal. J. Am. Medical Informatics Assoc. 25(12): 1584-1585 (2018) - [i7]Tsung-Ting Kuo, Lucila Ohno-Machado:
ModelChain: Decentralized Privacy-Preserving Healthcare Predictive Modeling Framework on Private Blockchain Networks. CoRR abs/1802.01746 (2018) - [i6]Jason N. Doctor, Jaideep Vaidya, Xiaoqian Jiang, Shuang Wang, Lisa M. Schilling, Toan Ong, Michael E. Matheny, Lucila Ohno-Machado, Daniella Meeker:
Efficient Determination of Equivalence for Encrypted Data. CoRR abs/1803.03760 (2018) - [i5]Tsung-Ting Kuo, Jina Huh, Jihoon Kim, Robert E. El-Kareh, Siddharth Singh, Stephanie Feudjio Feupe, Vincent Kuri, Gordon Lin, Michele E. Day, Lucila Ohno-Machado, Chun-Nan Hsu:
The Impact of Automatic Pre-annotation in Clinical Note Data Element Extraction - the CLEAN Tool. CoRR abs/1808.03806 (2018) - 2017
- [j137]Christian Hinske, Felipe R. C. dos Santos, Daniel T. Ohara, Lucila Ohno-Machado, Simone Kreth, Pedro A. F. Galante:
MiRIAD update: using alternative polyadenylation, protein interaction network analysis and additional species to enhance exploration of the role of intragenic miRNAs and their host genes. Database J. Biol. Databases Curation 2017: bax053 (2017) - [j136]Trevor Cohen, Kirk Roberts, Anupama E. Gururaj, Xiaoling Chen, Saeid Pournejati, George Alter, William R. Hersh, Dina Demner-Fushman, Lucila Ohno-Machado, Hua Xu:
A publicly available benchmark for biomedical dataset retrieval: the reference standard for the 2016 bioCADDIE dataset retrieval challenge. Database J. Biol. Databases Curation 2017: bax061 (2017) - [j135]Kirk Roberts, Anupama E. Gururaj, Xiaoling Chen, Saeid Pournejati, William R. Hersh, Dina Demner-Fushman, Lucila Ohno-Machado, Trevor Cohen, Hua Xu:
Information retrieval for biomedical datasets: the 2016 bioCADDIE dataset retrieval challenge. Database J. Biol. Databases Curation 2017: bax068 (2017) - [j134]Feng Chen, Shuang Wang, Xiaoqian Jiang, Sijie Ding, Yao Lu, Jihoon Kim, Süleyman Cenk Sahinalp, Chisato Shimizu, Jane C. Burns, Victoria J. Wright, Eileen Png, Martin L. Hibberd, David D. Lloyd, Hai Yang, Amalio Telenti, Cinnamon S. Bloss, Dov Fox, Kristin E. Lauter, Lucila Ohno-Machado:
PRINCESS: Privacy-protecting Rare disease International Network Collaboration via Encryption through Software guard extensionS. Bioinform. 33(6): 871-878 (2017) - [j133]Meng Wang, Zhanglong Ji, Shuang Wang, Jihoon Kim, Hai Yang, Xiaoqian Jiang, Lucila Ohno-Machado:
Mechanisms to protect the privacy of families when using the transmission disequilibrium test in genome-wide association studies. Bioinform. 33(23): 3716-3725 (2017) - [j132]Lucila Ohno-Machado:
Using health information technology for clinical decision support and predictive analytics. J. Am. Medical Informatics Assoc. 24(1): 1 (2017) - [j131]Lucila Ohno-Machado:
Health information technology and patient safety. J. Am. Medical Informatics Assoc. 24(2): 243 (2017) - [j130]Hyeoneui Kim, Elizabeth A. Bell, Jihoon Kim, Amy M. Sitapati, Joe Ramsdell, Claudiu Farcas, Dexter Friedman, Stephanie Feudjio Feupe, Lucila Ohno-Machado:
iCONCUR: informed consent for clinical data and bio-sample use for research. J. Am. Medical Informatics Assoc. 24(2): 380-387 (2017) - [j129]Lucila Ohno-Machado:
Advancing healthcare and biomedical research via new data-driven approaches. J. Am. Medical Informatics Assoc. 24(3): 471 (2017) - [j128]Lucila Ohno-Machado:
Education of informatics professionals and development of electronic information resources for clinicians, patients, health scientists, and study participants. J. Am. Medical Informatics Assoc. 24(4): 679 (2017) - [j127]Jean Louis Raisaro, Florian Tramèr, Zhanglong Ji, Diyue Bu, Yongan Zhao, W. Knox Carey, David D. Lloyd, Heidi Sofia, Dixie Baker, Paul Flicek, Suyash S. Shringarpure, Carlos D. Bustamante, Shuang Wang, Xiaoqian Jiang, Lucila Ohno-Machado, Haixu Tang, XiaoFeng Wang, Jean-Pierre Hubaux:
Addressing Beacon re-identification attacks: quantification and mitigation of privacy risks. J. Am. Medical Informatics Assoc. 24(4): 799-805 (2017) - [j126]Lucila Ohno-Machado:
Understanding and mitigating the digital divide in health care. J. Am. Medical Informatics Assoc. 24(5): 881 (2017) - [j125]Lucila Ohno-Machado:
JAMIA is going green. J. Am. Medical Informatics Assoc. 24(6): 1045 (2017) - [j124]Tsung-Ting Kuo, Hyeon-Eui Kim, Lucila Ohno-Machado:
Blockchain distributed ledger technologies for biomedical and health care applications. J. Am. Medical Informatics Assoc. 24(6): 1211-1220 (2017) - [j123]Lucila Ohno-Machado:
Electronic health records: usability and utilization by health care providers and patients. J. Am. Medical Informatics Assoc. 24(e1): e1 (2017) - [j122]Kathleen M. Jagodnik, Simon Koplev, Sherry L. Jenkins, Lucila Ohno-Machado, Benedict Paten, Stephan C. Schürer, Michel Dumontier, Ruben Verborgh, Alex Bui, Peipei Ping, Neil J. McKenna, Ravi K. Madduri, Ajay Pillai, Avi Ma'ayan:
Developing a framework for digital objects in the Big Data to Knowledge (BD2K) commons: Report from the Commons Framework Pilots workshop. J. Biomed. Informatics 71: 49-57 (2017) - [c107]Douglas S. Bell, Lisa Dahm, Nick R. Anderson, Ida Sim, Pralav P. Dessai, Marianne Zachariah, Lucila Ohno-Machado:
Self-Service Cohort Discovery across Five Academic Health Centers: Usage and User Evaluations of the University of California Research eXchange. AMIA 2017 - [c106]Elizabeth A. Bell, Diana Guijarro, Imho Jang, Wenhong Zhu, Tyler Bath, Gwangnoh Yun, Masud Rahman, Chao Jiang, Xiaoqian Jiang, Lucila Ohno-Machado, Hyeoneui Kim:
Honoring Patient's Data Sharing Preferences: Implementation Challenges. AMIA 2017 - [c105]Xiaoling Chen, Jun Xu, Jingqi Wang, Anupama E. Gururaj, Lucila Ohno-Machado, Hua Xu:
A Natural Language Processing System for Biomedical Dataset Retrieval. AMIA 2017 - [c104]Ram Dixit, Deevakar Rogith, Vidya Narayana, Mandana Salimi, Anupama E. Gururaj, Lucila Ohno-Machado, Hua Xu, Todd R. Johnson:
Meeting User Needs for a Data Discovery Index of Biomedical Big Data. AMIA 2017 - [c103]Chao Jiang, Xiaoqian Jiang, Shuang Wang, Diana Guijarro, Elizabeth A. Bell, Imho Jang, Gwangnoh Yun, Masud Rahman, Lucila Ohno-Machado, Hyeoneui Kim:
MALTASE: a Mobile AppLication To improve patients' Access to their data Sharing preferencE. AMIA 2017 - [c102]Katherine K. Kim, Lucila Ohno-Machado:
Consumer Views of Electronic Health and Genetic Data Sharing: Findings of a National Survey. AMIA 2017 - [c101]Kirk Roberts, Anupama E. Gururaj, Xiaoling Chen, Saeid Pournejati, Trevor Cohen, William R. Hersh, Dina Demner-Fushman, Lucila Ohno-Machado, Hua Xu:
Information Retrieval for Biomedical Datasets: The 2016 bioCADDIE Challenge. AMIA 2017 - [c100]Jaideep Vaidya, Basit Shafiq, Muazzam Asani, Nabil R. Adam, Xiaoqian Jiang, Lucila Ohno-Machado:
A Scalable Privacy-preserving Data Generation Methodology for Exploratory Analysis. AMIA 2017 - [c99]Wei Wei, Zhanglong Ji, Lucila Ohno-Machado:
Using a Convolutional Neural Network for Automatic Medical Subject Headings (MeSH) Assignment. AMIA 2017 - [c98]Jonathan Wickes, Hyeoneui Kim, Hyun-Dae Kim, Jihoon Kim, Wenhong Zhu, Lucila Ohno-Machado, Olivier Harismendy:
Project A-G-T-C: Adding Genetic Test data in Clinical data warehouse. AMIA 2017 - [c97]Xiaoqian Jiang, Claudiu Farcas, Benedict Paten, Mark Diekhans, Paul Avillach, Wallace Wadge, David Haussler, Lucila Ohno-Machado, Ida Sim:
Count Everything: Secure Count Query Framework Across Big Data Centers. CRI 2017 - [c96]Hanna Suominen, Henning Müller, Lucila Ohno-Machado, Sanna Salanterä, Günter Schreier, Leif Hanlen:
Prerequisites for International Exchanges of Health Information for Record Research: Comparison of Australian, Austrian, Finnish, Swiss, and US Policies. MedInfo 2017: 1312 - 2016
- [j121]Lucila Ohno-Machado:
Using informatics to engage patients and healthcare providers. J. Am. Medical Informatics Assoc. 23(1): 1 (2016) - [j120]Lucila Ohno-Machado:
A message to the next generation of biomedical informatics professionals. J. Am. Medical Informatics Assoc. 23(2): 241 (2016) - [j119]Yong Li, Xiaoqian Jiang, Shuang Wang, Hongkai Xiong, Lucila Ohno-Machado:
VERTIcal Grid lOgistic regression (VERTIGO). J. Am. Medical Informatics Assoc. 23(3): 570-579 (2016) - [j118]Lucila Ohno-Machado:
Building systems that change clinical practice and advance health sciences research. J. Am. Medical Informatics Assoc. 23(5): 857 (2016) - [j117]Lucila Ohno-Machado:
Data-driven informatics tools targeting patients and providers. J. Am. Medical Informatics Assoc. 23(6): 1039 (2016) - [j116]Lucila Ohno-Machado:
Data and the clinical decision support loop. J. Am. Medical Informatics Assoc. 23(e1): e1 (2016) - [j115]Haoyi Shi, Chao Jiang, Wenrui Dai, Xiaoqian Jiang, Yuzhe Richard Tang, Lucila Ohno-Machado, Shuang Wang:
Secure Multi-pArty Computation Grid LOgistic REgression (SMAC-GLORE). BMC Medical Informatics Decis. Mak. 16(S-3): 89 (2016) - [c95]Elizabeth A. Bell, Diana Guijarro, Hyeon-Eui Kim, Alexander Richardson, Jina Huh, Shuang Wang, Lucila Ohno-Machado:
Categorizing Clinical Data to Make it Easier for Patients to Indicate Their Data Sharing Preferences. AMIA 2016 - [c94]Claudiu Farcas, Tyler Bath, Paulina Paul, Antonios Koures, Lucila Ohno-Machado:
A Multi-Institutional Honest Broker in the Cloud. AMIA 2016 - [c93]Rodney A. Gabriel, Jihoon Kim, Lucila Ohno-Machado:
Developing a predictive model for discharge delay in the Post-Anesthesia Care Unit. AMIA 2016 - [c92]Jeffrey S. Grethe, Ibrahim Burak Özyurt, Hua Xu, Xiaoling Chen, Ruiling Liu, Ergin Soysal, Anupama E. Gururaj, Hyeon-Eui Kim, Trevor Cohen, Todd R. Johnson, Mandana Salimi, Saeid Pournejati, Min Jiang, Claudiu Farcas, Alejandra N. González-Beltrán, Philippe Rocca-Serra, Muhamamd F. Amith, Cui Tao, Ian Fore, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Lucila Ohno-Machado:
A Scalable Dataset Indexing Infrastructure for the bioCADDIE Data Discovery System. AMIA 2016 - [c91]Imho Jang, Diana Guijarro, Jimmy Quach, Jihoon Kim, Hyeon-Eui Kim, Elizabeth A. Bell, Robert E. El-Kareh, Lucila Ohno-Machado:
Does Health Status Affect Patient Preferences for Sharing Clinical Data for Research? AMIA 2016 - [c90]Hyeon-Eui Kim, Jeeyae Choi, Imho Jang, Jimmy Quach, Lucila Ohno-Machado:
Feasibility of Representing Data from Published Nursing Research Using the OMOP Common Data Model. AMIA 2016 - [c89]Katherine K. Kim, Dmitry Khodyakov, Kate Marie, Marika Booth, Paul A. Heidenreich, Zhaoping Li, Michael K. Ong, Jane C. Burns, Daniella Meeker, Lucila Ohno-Machado:
An Online Delphi Consensus Panel for Prioritizing Person-Centered Outcomes Research Topics. AMIA 2016 - [c88]Tsung-Ting Kuo, Pallavi Rao, Cleo K. Maehara, Son Doan, Juan D. Chaparro, Michele E. Day, Claudiu Farcas, Lucila Ohno-Machado, Chun-Nan Hsu:
Ensembles of NLP Tools for Data Element Extraction from Clinical Notes. AMIA 2016 - [c87]Michael E. Matheny, Dax M. Westerman, Laura Pearlman, Josh Gieringer, Xiaoqian Jiang, Claudiu Farcas, Tara K. Knight, Shuang Wang, Amy Perkins, Lucila Ohno-Machado, Bill Clarke, Daniella Meeker:
An Integrated Privacy Preserving Collaborative Analytics Platform: The PCORnet pSCANNER-PopMedNet TM Software Suite. AMIA 2016 - [c86]Lucila Ohno-Machado, George Hripcsak, Michael E. Matheny, Yuan Wu, Xiaoqian Jiang:
Calibration of Predictive Models for Clinical Decision Making: Personalizing Prevention, Treatment, and Disease Progression. AMIA 2016 - [c85]Lucila Ohno-Machado, Hyeon-Eui Kim, Elizabeth A. Bell, Xiaoqian Jiang, Dexter Friedman, Claudiu Farcas:
iCONCUR: informed CONsent for Clinical data and biosample Use for Research. AMIA 2016 - [c84]Siddharth Singh, Paulina Paul, Chun-Nan Hsu, Lucila Ohno-Machado:
Developing an Electronic Health Record-Based Cohort of Patients with Inflammatory Bowel Diseases for Observational Patient-Centered Outcomes Research. AMIA 2016 - [c83]Wei Wei, Zhanglong Ji, Lucila Ohno-Machado:
Using the hierarchical structure of the Medical Subject Headings (MeSH) for automatic MeSH term assignment. AMIA 2016 - [c82]Hua Xu, Jeffrey S. Grethe, Xiaoling Chen, Ruiling Liu, Ergin Soysal, Anupama E. Gururaj, Yueling Li, Ibrahim Burak Özyurt, Hyeon-Eui Kim, Trevor Cohen, Todd R. Johnson, Mandana Salimi, Saeid Pournejati, Min Jiang, Claudiu Farcas, Alejandra N. González-Beltrán, Philippe Rocca-Serra, Muhamamd F. Amith, Cui Tao, Ian Fore, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Lucila Ohno-Machado:
Development of DataMed, a Data Discovery Index Prototype by bioCADDIE: Laying the Groundwork for Biomedical Data Discovery. AMIA 2016 - [i4]Hanna Suominen, Henning Müller, Lucila Ohno-Machado, Sanna Salanterä, Günter Schreier, Leif Hanlen:
Prerequisites for International Exchanges of Health Information: Comparison of Australian, Austrian, Finnish, Swiss, and US Privacy Policies. CoRR abs/1612.04902 (2016) - 2015
- [j114]Lucila Ohno-Machado:
Highlights. J. Am. Medical Informatics Assoc. 22(1): 1 (2015) - [j113]Yongan Zhao, XiaoFeng Wang, Xiaoqian Jiang, Lucila Ohno-Machado, Haixu Tang:
Choosing blindly but wisely: differentially private solicitation of DNA datasets for disease marker discovery. J. Am. Medical Informatics Assoc. 22(1): 100-108 (2015) - [j112]Lucila Ohno-Machado:
Highlights. J. Am. Medical Informatics Assoc. 22(2): 259 (2015) - [j111]Lucila Ohno-Machado:
A journal's role in resource sharing and reproducibility. J. Am. Medical Informatics Assoc. 22(3): 491 (2015) - [j110]Lucila Ohno-Machado:
Tailoring informatics interventions to patients and healthcare providers. J. Am. Medical Informatics Assoc. 22(4): 747 (2015) - [j109]Katherine K. Kim, Jill G. Joseph, Lucila Ohno-Machado:
Comparison of consumers' views on electronic data sharing for healthcare and research. J. Am. Medical Informatics Assoc. 22(4): 821-830 (2015) - [j108]Lucila Ohno-Machado:
Mining electronic health record data: finding the gold nuggets. J. Am. Medical Informatics Assoc. 22(5): 937 (2015) - [j107]Lucila Ohno-Machado:
Trends in informatics and journal peer-review processes. J. Am. Medical Informatics Assoc. 22(6): 1113 (2015) - [j106]Dong Han, Shuang Wang, Chao Jiang, Xiaoqian Jiang, Hyeon-Eui Kim, Jimeng Sun, Lucila Ohno-Machado:
Trends in biomedical informatics: automated topic analysis of JAMIA articles. J. Am. Medical Informatics Assoc. 22(6): 1153-1163 (2015) - [j105]Daniella Meeker, Xiaoqian Jiang, Michael E. Matheny, Claudiu Farcas, Michel D'Arcy, Laura Pearlman, Lavanya Nookala, Michele E. Day, Katherine K. Kim, Hyeoneui Kim, Aziz A. Boxwala, Robert E. El-Kareh, Grace Kuo, Frederic S. Resnic, Carl Kesselman, Lucila Ohno-Machado:
A system to build distributed multivariate models and manage disparate data sharing policies: implementation in the scalable national network for effectiveness research. J. Am. Medical Informatics Assoc. 22(6): 1187-1195 (2015) - [j104]Chia-Lun Lu, Shuang Wang, Zhanglong Ji, Yuan Wu, Li Xiong, Xiaoqian Jiang, Lucila Ohno-Machado:
WebDISCO: a web service for distributed cox model learning without patient-level data sharing. J. Am. Medical Informatics Assoc. 22(6): 1212-1219 (2015) - [j103]Lucila Ohno-Machado:
Special online issue focusing on patients and caregivers. J. Am. Medical Informatics Assoc. 22(e1): e1 (2015) - [j102]Yuan Wu, Xiaoqian Jiang, Shuang Wang, Wenchao Jiang, Pinghao Li, Lucila Ohno-Machado:
Grid multi-category response logistic models. BMC Medical Informatics Decis. Mak. 15: 10 (2015) - [c81]Fern FitzHenry, Jesse Brannen, Jason N. Denton, Jonathan R. Nebeker, Scott L. DuVall, Freneka F. Minter, Jeffrey Scehnet, Brian C. Sauer, Lucila Ohno-Machado, Michael E. Matheny:
Transforming the National Department of Veterans Affairs Data Warehouse to the OMOP Common Data Model. AMIA 2015 - [c80]Jessica D. Tenenbaum, Greg Biggers, Bradley A. Malin, Lucila Ohno-Machado, Leslie Wolf:
Patient privacy and "de-identified" health records in the genomic era. AMIA 2015 - [p1]Shuang Wang, Xiaoqian Jiang, Dov Fox, Lucila Ohno-Machado:
Preserving Genome Privacy in Research Studies. Medical Data Privacy Handbook 2015: 425-441 - 2014
- [j101]Ludwig Christian G. Hinske, Gustavo S. França, Hugo A. M. Torres, Daniel T. Ohara, Camila Miranda Lopes-Ramos, Jens Heyn, Luiz F. L. Reis, Lucila Ohno-Machado, Simone Kreth, Pedro A. F. Galante:
miRIAD - integrating microRNA inter- and intragenic data. Database J. Biol. Databases Curation 2014 (2014) - [j100]Jihoon Kim, Eric Levy, Alex Ferbrache, Petra Stepanowsky, Claudiu Farcas, Shuang Wang, Stefan Brunner, Tyler Bath, Yuan Wu, Lucila Ohno-Machado:
MAGI: a Node.js web service for fast microRNA-Seq analysis in a GPU infrastructure. Bioinform. 30(19): 2826-2827 (2014) - [j99]Lucila Ohno-Machado:
The role of scientific publication in times of change. J. Am. Medical Informatics Assoc. 21(1): 1 (2014) - [j98]Son Doan, Ko-Wei Lin, Mike Conway, Lucila Ohno-Machado, Alexander Hsieh, Stephanie Feudjio Feupe, Asher Garland, Mindy K. Ross, Xiaoqian Jiang, Seena Farzaneh, Rebecca Walker, Neda Alipanah, Jing Zhang, Hua Xu, Hyeoneui Kim:
PhenDisco: phenotype discovery system for the database of genotypes and phenotypes. J. Am. Medical Informatics Assoc. 21(1): 31-36 (2014) - [j97]Lucila Ohno-Machado:
NIH's Big Data to Knowledge initiative and the advancement of biomedical informatics. J. Am. Medical Informatics Assoc. 21(2): 193 (2014) - [j96]Pinghao Li, Xiaoqian Jiang, Shuang Wang, Jihoon Kim, Hongkai Xiong, Lucila Ohno-Machado:
HUGO: Hierarchical mUlti-reference Genome cOmpression for aligned reads. J. Am. Medical Informatics Assoc. 21(2): 363-373 (2014) - [j95]Lucila Ohno-Machado:
Informatics support for clinical decisions. J. Am. Medical Informatics Assoc. 21(3): 385 (2014) - [j94]Lucila Ohno-Machado:
Networking the country to promote health and scientific discovery. J. Am. Medical Informatics Assoc. 21(4): 575 (2014) - [j93]Lucila Ohno-Machado, Zia Agha, Douglas S. Bell, Lisa Dahm, Michele E. Day, Jason N. Doctor, Davera Gabriel, Maninder K. Kahlon, Katherine K. Kim, Michael A. Hogarth, Michael E. Matheny, Daniella Meeker, Jonathan R. Nebeker:
Brief communication: pSCANNER: patient-centered Scalable National Network for Effectiveness Research. J. Am. Medical Informatics Assoc. 21(4): 621-626 (2014) - [j92]Katherine K. Kim, Dennis K. Browe, Holly C. Logan, Roberta Holm, Lori Hack, Lucila Ohno-Machado:
Data governance requirements for distributed clinical research networks: triangulating perspectives of diverse stakeholders. J. Am. Medical Informatics Assoc. 21(4): 714-719 (2014) - [j91]Lucila Ohno-Machado:
Structuring text and standardizing data for clinical and population health applications. J. Am. Medical Informatics Assoc. 21(5): 763 (2014) - [j90]Lucila Ohno-Machado:
Focusing on the patient: mHealth, social media, electronic health records, and decision support systems. J. Am. Medical Informatics Assoc. 21(6): 953 (2014) - [j89]Lucila Ohno-Machado:
Disseminating informatics knowledge and training the next generation of leaders. J. Am. Medical Informatics Assoc. 21(6): 954-956 (2014) - [j88]Xiaoqian Jiang, Yongan Zhao, Xiaofeng Fang, Bradley A. Malin, Shuang Wang, Lucila Ohno-Machado, Haixu Tang:
A community assessment of privacy preserving techniques for human genomes. BMC Medical Informatics Decis. Mak. 14(S-1): S1 (2014) - [j87]Aditya Krishna Menon, Xiaoqian Jiang, Jihoon Kim, Jaideep Vaidya, Lucila Ohno-Machado:
Detecting inappropriate access to electronic health records using collaborative filtering. Mach. Learn. 95(1): 87-101 (2014) - [c79]Elizabeth A. Bell, Lucila Ohno-Machado, María Adela Grando:
Sharing My Health Data: A Survey of Data Sharing Preferences of Healthy Individuals. AMIA 2014 - [c78]Cynthia S. Gadd, Lucila Ohno-Machado, William R. Hersh, Rebecca S. Crowley:
Informatics without Borders: International Outreach of US-based Training Programs. AMIA 2014 - [c77]Hyeoneui Kim, Lucila Ohno-Machado, Janet Oh, Xiaoqian Jiang:
Trends in Publication of Nursing Informatics Research. AMIA 2014 - [c76]Suchi Saria, Gabriel J. Escobar, Paul C. Tang, Lucila Ohno-Machado, Alex Dummett:
Predictive Analytics in Healthcare (HPA): Considerations and Challenges. AMIA 2014 - [c75]Wei Wei, Shuang Wang, Xiaoqian Jiang, Lucila Ohno-Machado:
A Keyword Suggestion Strategy Based on Citation Networks. AMIA 2014 - [i3]Son Doan, Mike Conway, Tu Minh Phuong, Lucila Ohno-Machado:
Natural Language Processing in Biomedicine: A Unified System Architecture Overview. CoRR abs/1401.0569 (2014) - 2013
- [j86]Wenchao Jiang, Pinghao Li, Shuang Wang, Yuan Wu, Meng Xue, Lucila Ohno-Machado, Xiaoqian Jiang:
WebGLORE: a Web service for Grid LOgistic REgression. Bioinform. 29(24): 3238-3240 (2013) - [j85]Vineet Bafna, Alin Deutsch, Andrew Heiberg, Christos Kozanitis, Lucila Ohno-Machado, George Varghese:
Abstractions for genomics. Commun. ACM 56(1): 83-93 (2013) - [j84]Lucila Ohno-Machado:
Sharing data for the public good and protecting individual privacy: informatics solutions to combine different goals. J. Am. Medical Informatics Assoc. 20(1): 1 (2013) - [j83]James J. Gardner, Li Xiong, Yonghui Xiao, Jingjing Gao, Andrew R. Post, Xiaoqian Jiang, Lucila Ohno-Machado:
SHARE: system design and case studies for statistical health information release. J. Am. Medical Informatics Assoc. 20(1): 109-116 (2013) - [j82]Lucila Ohno-Machado:
Informatics that works for you. J. Am. Medical Informatics Assoc. 20(2): 211 (2013) - [j81]Lucila Ohno-Machado:
Health surveillance using the internet and other sources of information. J. Am. Medical Informatics Assoc. 20(3): 403 (2013) - [j80]Noman Mohammed, Xiaoqian Jiang, Rui Chen, Benjamin C. M. Fung, Lucila Ohno-Machado:
Privacy-preserving heterogeneous health data sharing. J. Am. Medical Informatics Assoc. 20(3): 462-469 (2013) - [j79]Atul J. Butte, Lucila Ohno-Machado:
Making it personal: translational bioinformatics. J. Am. Medical Informatics Assoc. 20(4): 595-596 (2013) - [j78]Lucila Ohno-Machado, Prakash M. Nadkarni, Kevin B. Johnson:
Natural language processing: algorithms and tools to extract computable information from EHRs and from the biomedical literature. J. Am. Medical Informatics Assoc. 20(5): 805 (2013) - [j77]Lucila Ohno-Machado:
Data science and informatics: when it comes to biomedical data, is there a real distinction? J. Am. Medical Informatics Assoc. 20(6): 1009 (2013) - [j76]Shuang Wang, Xiaoqian Jiang, Yuan Wu, Lijuan Cui, Samuel Cheng, Lucila Ohno-Machado:
EXpectation Propagation LOgistic REgRession (EXPLORER): Distributed privacy-preserving online model learning. J. Biomed. Informatics 46(3): 480-496 (2013) - [j75]Xiaoqian Jiang, Zhanglong Ji, Shuang Wang, Noman Mohammed, Samuel Cheng, Lucila Ohno-Machado:
Differential-Private Data Publishing Through Component Analysis. Trans. Data Priv. 6(1): 19-34 (2013) - [c74]Valerie Florance, Perry L. Miller, Lucila Ohno-Machado, George Hripcsak, William R. Hersh, George Demiris:
Training the Informatics Research Workforce, Part 2. AMIA 2013 - [c73]Wenrui Dai, Hongkai Xiong, Xiaoqian Jiang, Lucila Ohno-Machado:
An Adaptive Difference Distribution-Based Coding with Hierarchical Tree Structure for DNA Sequence Compression. DCC 2013: 371-380 - [c72]Shuang Wang, Xiaoqian Jiang, Lijuan Cui, Wenrui Dai, Nikos Deligiannis, Pinghao Li, Hongkai Xiong, Samuel Cheng, Lucila Ohno-Machado:
Genome Sequence Compression with Distributed Source Coding. DCC 2013: 525 - [c71]Aminmohammad Roozgard, Nafise Barzigar, Shuang Wang, Xiaoqian Jiang, Lucila Ohno-Machado, Samuel Cheng:
Nucleotide sequence alignment using sparse coding and belief propagation. EMBC 2013: 588-591 - [c70]Yannis Katsis, Chaitanya K. Baru, Ted Chan, Sanjoy Dasgupta, Claudiu Farcas, William G. Griswold, Jeannie Huang, Lucila Ohno-Machado, Yannis Papakonstantinou, Fredric Raab, Kevin Patrick:
DELPHI: Data E-platform for personalized population health. Healthcom 2013: 115-119 - [c69]Claudiu Farcas, Natasha Balac, Lucila Ohno-Machado:
Biomedical CyberInfrastructure challenges. XSEDE 2013: 6:1-6:4 - 2012
- [j74]Lucila Ohno-Machado:
Computer-based safety surveillance and patient-centered health records. J. Am. Medical Informatics Assoc. 19(1): 1 (2012) - [j73]Lucila Ohno-Machado:
Informatics research to enable clinically relevant, personalized genomic medicine. J. Am. Medical Informatics Assoc. 19(2): 149-150 (2012) - [j72]Lucila Ohno-Machado, Vineet Bafna, Aziz A. Boxwala, Brian E. Chapman, Wendy Webber Chapman, Kamalika Chaudhuri, Michele E. Day, Claudiu Farcas, Nathaniel D. Heintzman, Xiaoqian Jiang, Hyeoneui Kim, Jihoon Kim, Michael E. Matheny, Frederic S. Resnic, Staal Amund Vinterbo:
iDASH: integrating data for analysis, anonymization, and sharing. J. Am. Medical Informatics Assoc. 19(2): 196-201 (2012) - [j71]Xiaoqian Jiang, Melanie Osl, Jihoon Kim, Lucila Ohno-Machado:
Calibrating predictive model estimates to support personalized medicine. J. Am. Medical Informatics Assoc. 19(2): 263-274 (2012) - [j70]Lucila Ohno-Machado:
Cost-effectiveness of informatics and health IT: impact on finances and quality of care. J. Am. Medical Informatics Assoc. 19(3): 327 (2012) - [j69]Lucila Ohno-Machado:
Where do we stand in the maze of health information systems? J. Am. Medical Informatics Assoc. 19(4): 497 (2012) - [j68]Lucila Ohno-Machado:
Informatics 2.0: implications of social media, mobile health, and patient-reported outcomes for healthcare and individual privacy. J. Am. Medical Informatics Assoc. 19(5): 683 (2012) - [j67]Yuan Wu, Xiaoqian Jiang, Jihoon Kim, Lucila Ohno-Machado:
Grid Binary LOgistic REgression (GLORE): building shared models without sharing data. J. Am. Medical Informatics Assoc. 19(5): 758-764 (2012) - [j66]Marcio von Muhlen, Lucila Ohno-Machado:
Reviewing social media use by clinicians. J. Am. Medical Informatics Assoc. 19(5): 777-781 (2012) - [j65]Lucila Ohno-Machado:
Careers in informatics: a diversity of options with an abundance of jobs. J. Am. Medical Informatics Assoc. 19(6): 919 (2012) - [j64]Pankaj Sarin, Richard D. Urman, Lucila Ohno-Machado:
An improved model for predicting postoperative nausea and vomiting in ambulatory surgery patients using physician-modifiable risk factors. J. Am. Medical Informatics Assoc. 19(6): 995-1002 (2012) - [j63]Xiaoqian Jiang, Aziz A. Boxwala, Robert E. El-Kareh, Jihoon Kim, Lucila Ohno-Machado:
A patient-driven adaptive prediction technique to improve personalized risk estimation for clinical decision support. J. Am. Medical Informatics Assoc. 19(e1) (2012) - [j62]Lucila Ohno-Machado:
Big science, big data, and a big role for biomedical informatics. J. Am. Medical Informatics Assoc. 19(e1) (2012) - [c68]Alexander Hsieh, Michael Conway, Hyeoneui Kim, Lucila Ohno-Machado:
Identifying Age Variables in dbGaP using Natural Language Processing. AMIA 2012 - [c67]Xiaoqian Jiang, Jihoon Kim, Yuan Wu, Lucila Ohno-Machado:
Selecting Cases for Whom Additional Tests Can Improve Prognostication. AMIA 2012 - [c66]Myoung Lah, Karen Calfas, James H. Fowler, Lucila Ohno-Machado:
Sharing Facebook Data For Research: Are College Students Willing to Donate their Data? AMIA 2012 - [c65]Jialan Que, Xiaoqian Jiang, Lucila Ohno-Machado:
A Collaborative Framework for Distributed Privacy-Preserving Support Vector Machine Learning. AMIA 2012 - [c64]Yuan Wu, Xiaoqian Jiang, Lucila Ohno-Machado:
Institutional Privacy-preserving Distributed binary Logistic Regression (IPDLR). AMIA 2012 - [c63]Petra Stepanowsky, Jihoon Kim, Lucila Ohno-Machado:
A Robust Feature Selection Method for Novel Pre-microRNA Identification Using a Combination of Nucleotide-Structure Triplets. HISB 2012: 61 - [c62]Son Doan, Lucila Ohno-Machado, Nigel Collier:
Enhancing Twitter Data Analysis with Simple Semantic Filtering: Example in Tracking Influenza-Like Illnesses. HISB 2012: 62-71 - [c61]Neda Alipanah, Hyeoneui Kim, Lucila Ohno-Machado:
Building an Ontology of Phenotypes for Existing GWAS Studies. HISB 2012: 111 - [c60]Shuang Wang, Xiaoqian Jiang, Lucila Ohno-Machado, Lijuan Cui, Samuel Cheng, Hongkai Xiong:
Privacy-Preserving Biometric System for Secure Fingerprint Authentication. HISB 2012: 128 - [c59]Shuang Wang, Xiaoqian Jiang, Lucila Ohno-Machado, Lijuan Cui, Samuel Cheng:
SecUre Privacy-presERving Medical Image CompRessiOn (SUPERMICRO). HISB 2012: 130 - [c58]Xiaoqian Jiang, Shuang Wang, Zhanglong Ji, Lucila Ohno-Machado, Li Xiong:
A Randomized Response Model for Privacy-Preserving Data Dissemination. HISB 2012: 138 - [c57]Aditya Krishna Menon, Xiaoqian Jiang, Shankar Vembu, Charles Elkan, Lucila Ohno-Machado:
Predicting accurate probabilities with a ranking loss. ICML 2012 - [i2]Aditya Krishna Menon, Xiaoqian Jiang, Shankar Vembu, Charles Elkan, Lucila Ohno-Machado:
Predicting accurate probabilities with a ranking loss. CoRR abs/1206.4661 (2012) - [i1]Son Doan, Lucila Ohno-Machado, Nigel Collier:
Enhancing Twitter Data Analysis with Simple Semantic Filtering: Example in Tracking Influenza-Like Illnesses. CoRR abs/1210.0848 (2012) - 2011
- [j61]Jihoon Kim, Kiltesh Patel, Hyunchul Jung, Winston Patrick Kuo, Lucila Ohno-Machado:
AnyExpress: Integrated toolkit for analysis of cross-platform gene expression data using a fast interval matching algorithm. BMC Bioinform. 12: 75 (2011) - [j60]Lucila Ohno-Machado:
What's new in informatics. J. Am. Medical Informatics Assoc. 18(1): 1 (2011) - [j59]Lucila Ohno-Machado:
A new JAMIA. J. Am. Medical Informatics Assoc. 18(1): 2 (2011) - [j58]Lucila Ohno-Machado:
Electronic health records and computer-based clinical decision support: are we there yet? J. Am. Medical Informatics Assoc. 18(2): 109 (2011) - [j57]Harold P. Lehmann, Lucila Ohno-Machado:
Evaluation of informatics systems: beyond RCTs and beyond the hospital. J. Am. Medical Informatics Assoc. 18(2): 110-111 (2011) - [j56]Lucila Ohno-Machado:
Informatics is about algorithms, systems, people, and social networks. J. Am. Medical Informatics Assoc. 18(3): 209 (2011) - [j55]Lucila Ohno-Machado:
A hybrid open-access model to bridge the publishing divide and reach out to a broader community. J. Am. Medical Informatics Assoc. 18(3): 210-211 (2011) - [j54]Lucila Ohno-Machado:
Biomedical informatics: how we got here and where we are headed. J. Am. Medical Informatics Assoc. 18(4): 351 (2011) - [j53]Indra Neil Sarkar, Atul J. Butte, Yves A. Lussier, Peter Tarczy-Hornoch, Lucila Ohno-Machado:
Translational bioinformatics: linking knowledge across biological and clinical realms. J. Am. Medical Informatics Assoc. 18(4): 354-357 (2011) - [j52]Aziz A. Boxwala, Jihoon Kim, Janice M. Grillo, Lucila Ohno-Machado:
Using statistical and machine learning to help institutions detect suspicious access to electronic health records. J. Am. Medical Informatics Assoc. 18(4): 498-505 (2011) - [j51]Lucila Ohno-Machado:
Realizing the full potential of electronic health records: the role of natural language processing. J. Am. Medical Informatics Assoc. 18(5): 539 (2011) - [j50]Prakash M. Nadkarni, Lucila Ohno-Machado, Wendy Webber Chapman:
Natural language processing: an introduction. J. Am. Medical Informatics Assoc. 18(5): 544-551 (2011) - [j49]Lucila Ohno-Machado:
Use of electronic health record systems for decision support. J. Am. Medical Informatics Assoc. 18(6): 729 (2011) - [j48]Lucila Ohno-Machado:
Innovative approaches to support patient decision making, improve safety, and enable large-scale clinical research. J. Am. Medical Informatics Assoc. 18(Supplement): 1 (2011) - [j47]Hyeoneui Kim, Xiaoqian Jiang, Jihoon Kim, Lucila Ohno-Machado:
Trends in biomedical informatics: most cited topics from recent years. J. Am. Medical Informatics Assoc. 18(Supplement): 166-170 (2011) - 2010
- [j46]Ronilda Lacson, Michael Mbagwu, Hisham Yousif, Lucila Ohno-Machado:
Assessing the quality of annotations in asthma gene expression experiments. BMC Bioinform. 11(S-9): S8 (2010) - [j45]Kumiko Ohashi, Sakiko Ota, Lucila Ohno-Machado, Hiroshi Tanaka:
Smart medical environment at the point of care: Auto-tracking clinical interventions at the bed side using RFID technology. Comput. Biol. Medicine 40(6): 545-554 (2010) - [j44]Hyeoneui Kim, Jeeyae Choi, Sarah Thompson, Lindsay Meeker, Patricia C. Dykes, Denise Goldsmith, Lucila Ohno-Machado:
Automating pressure ulcer risk assessment using documented patient data. Int. J. Medical Informatics 79(12): 840-848 (2010) - [j43]Ronilda Lacson, Erik Pitzer, Jihoon Kim, Pedro A. F. Galante, Christian Hinske, Lucila Ohno-Machado:
DSGeo: Software tools for cross-platform analysis of gene expression data in GEO. J. Biomed. Informatics 43(5): 709-715 (2010)
2000 – 2009
- 2009
- [j42]Erik Pitzer, Ronilda Lacson, Christian Hinske, Jihoon Kim, Pedro A. F. Galante, Lucila Ohno-Machado:
Towards large-scale sample annotation in gene expression repositories. BMC Bioinform. 10(S-9): 9 (2009) - [j41]Ronilda Lacson, Erik Pitzer, Christian Hinske, Pedro A. F. Galante, Lucila Ohno-Machado:
Evaluation of a large-scale biomedical data annotation initiative. BMC Bioinform. 10(S-9): 10 (2009) - [j40]Dorothy Curtis, Jacob Bailey, Esteban J. Pino, Thomas O. Stair, Staal Amund Vinterbo, Jason Waterman, Eugene Shih, John V. Guttag, Robert A. Greenes, Lucila Ohno-Machado:
Using ambient intelligence for physiological monitoring. J. Ambient Intell. Smart Environ. 1(2): 129-142 (2009) - [j39]Lucila Ohno-Machado, Randolph A. Miller:
Editorial: Outstanding Submissions to the AMIA Annual Symposium Now Featured in JAMIA. J. Am. Medical Informatics Assoc. 16(1): 143-144 (2009) - [j38]Lucila Ohno-Machado, Donald Ellison, Edward H. Shortliffe:
Special Features: Presentation of the 2008 Morris F. Collen Award to Robert A. Greenes. J. Am. Medical Informatics Assoc. 16(3): 413-418 (2009) - 2008
- [j37]Dorothy Curtis, Esteban J. Pino, Jacob Bailey, Eugene Shih, Jason Waterman, Staal Amund Vinterbo, Thomas O. Stair, John V. Guttag, Robert A. Greenes, Lucila Ohno-Machado:
Application of Information Technology: SMART - An Integrated Wireless System for Monitoring Unattended Patients. J. Am. Medical Informatics Assoc. 15(1): 44-53 (2008) - [c56]Kumiko Ohashi, Sakiko Ota, Lucila Ohno-Machado, Hiroshi Tanaka:
Comparison of RFID Systems for Tracking Clinical Interventions at the Bedside. AMIA 2008 - [c55]Melanie Osl, Lucila Ohno-Machado, Christian Baumgartner, Bernhard Tilg, Stephan Dreiseitl:
Improving Calibration of Logistic Regression Models by Local Estimates. AMIA 2008 - [c54]Dorothy Curtis, Eugene Shih, Jason Waterman, John V. Guttag, Jacob Bailey, Thomas O. Stair, Robert A. Greenes, Lucila Ohno-Machado:
Physiological signal monitoring in the waiting areas of an emergency room. BODYNETS 2008: 5 - 2007
- [j36]Pedro A. F. Galante, Jeff Trimarchi, Constance L. Cepko, Sandro J. de Souza, Lucila Ohno-Machado, Winston Patrick Kuo:
Automatic correspondence of tags and genes (ACTG): a tool for the analysis of SAGE, MPSS and SBS data. Bioinform. 23(7): 903-905 (2007) - [j35]Beatriz Stransky, Junior Barrera, Lucila Ohno-Machado, Sandro J. de Souza:
Modeling Cancer: Integration of "omics" Information in Dynamic Systems. J. Bioinform. Comput. Biol. 5(4): 977-986 (2007) - [j34]Michael E. Matheny, Frederic S. Resnic, Nipun Arora, Lucila Ohno-Machado:
Effects of SVM parameter optimization on discrimination and calibration for post-procedural PCI mortality. J. Biomed. Informatics 40(6): 688-697 (2007) - [c53]Michael E. Matheny, Nipun Arora, Lucila Ohno-Machado, Frederic S. Resnic:
Rare Adverse Event Monitoring of Medical Devices with the Use of an Automated Surveillance Tool. AMIA 2007 - 2006
- [j33]Staal Amund Vinterbo, Stephan Dreiseitl, Lucila Ohno-Machado:
Approximation properties of haplotype tagging. BMC Bioinform. 7: 8 (2006) - [j32]Michael E. Matheny, Lucila Ohno-Machado, Frederic S. Resnic:
Research Paper: Monitoring Device Safety in Interventional Cardiology. J. Am. Medical Informatics Assoc. 13(2): 180-187 (2006) - [j31]Griffin M. Weber, Lucila Ohno-Machado, Stuart M. Shieber:
Representation in stochastic search for phylogenetic tree reconstruction. J. Biomed. Informatics 39(1): 43-50 (2006) - 2005
- [j30]Staal Amund Vinterbo, Eun-Young Kim, Lucila Ohno-Machado:
Small, fuzzy and interpretable gene expression based classifiers. Bioinform. 21(9): 1964-1970 (2005) - [j29]Lucila Ohno-Machado:
Clinical machine learning. J. Biomed. Informatics 38(5): 345-346 (2005) - [j28]Michael E. Matheny, Lucila Ohno-Machado, Frederic S. Resnic:
Discrimination and calibration of mortality risk prediction models in interventional cardiology. J. Biomed. Informatics 38(5): 367-375 (2005) - [j27]Kelly H. Zou, Frederic S. Resnic, Ion-Florin Talos, Daniel Goldberg-Zimring, Jui G. Bhagwat, Steven Haker, Ron Kikinis, Ferenc A. Jolesz, Lucila Ohno-Machado:
A global goodness-of-fit test for receiver operating characteristic curve analysis via the bootstrap method. J. Biomed. Informatics 38(5): 395-403 (2005) - [j26]Thomas A. Lasko, Jui G. Bhagwat, Kelly H. Zou, Lucila Ohno-Machado:
The use of receiver operating characteristic curves in biomedical informatics. J. Biomed. Informatics 38(5): 404-415 (2005) - [c52]Heimar F. Marin, Eduardo Massad, Eduardo P. Marques, Raymundo S. Azevedo, Lucila Ohno-Machado:
Training Health Informatics Professionals in Brazil: Rationale for the Development of a New Certificate Program. AMIA 2005 - [c51]Michael E. Matheny, Lucila Ohno-Machado, Frederic S. Resnic:
Exploration of a Bayesian Updating Tool to Provide Real-Time Safety Monitoring for New Medical Devices. AMIA 2005 - [c50]Esteban J. Pino, Lucila Ohno-Machado, Eduardo P. Wiechmann, Dorothy Curtis:
Real-Time ECG Algorithms for Ambulatory Patient Monitoring. AMIA 2005 - [c49]Tomohiro Sawa, Takashi Funahara, Hirokazu Nagatani, Masaharu Okahara, Keiko Sase, Yoshinori Nakata, Lucila Ohno-Machado:
WLAN PDA to improve efficiency in patient care documentation. AMIA 2005 - [c48]Jason Waterman, Dorothy Curtis, Michel Goraczko, Eugene Shih, Pankaj Sarin, Esteban J. Pino, Lucila Ohno-Machado, Robert A. Greenes, John V. Guttag, Thomas O. Stair:
Demonstration of SMART (Scalable Medical Alert Response Technology). AMIA 2005 - [c47]Steven Haker, William M. Wells III, Simon K. Warfield, Ion-Florin Talos, Jui G. Bhagwat, Daniel Goldberg-Zimring, Asim Mian, Lucila Ohno-Machado, Kelly H. Zou:
Combining Classifiers Using Their Receiver Operating Characteristics and Maximum Likelihood Estimation. MICCAI 2005: 506-514 - 2004
- [j25]Griffin M. Weber, Staal Amund Vinterbo, Lucila Ohno-Machado:
Multivariate selection of genetic markers in diagnostic classification. Artif. Intell. Medicine 31(2): 155-167 (2004) - [j24]Agnieszka Szot, Francine L. Jacobson, Samson Munn, Darius Jazayeri, Edward Nardell, David Harrison, Ralph Drosten, Lucila Ohno-Machado, Laura M. Smeaton, Hamish S. F. Fraser:
Diagnostic accuracy of chest X-rays acquired using a digital camera for low-cost teleradiology. Int. J. Medical Informatics 73(1): 65-73 (2004) - [j23]Lucila Ohno-Machado, Paulo Sérgio Panse Silveira, Staal Amund Vinterbo:
Protecting patient privacy by quantifiable control of disclosures in disseminated databases. Int. J. Medical Informatics 73(7-8): 599-606 (2004) - [j22]Lucila Ohno-Machado:
Research on machine learning issues in biomedical informatics modeling. J. Biomed. Informatics 37(4): 221-223 (2004) - [j21]Richard Butterworth, Dan A. Simovici, Gustavo S. Santos, Lucila Ohno-Machado:
A greedy algorithm for supervised discretization. J. Biomed. Informatics 37(4): 285-292 (2004) - [j20]Winston Patrick Kuo, Eun-Young Kim, Jeff Trimarchi, Tor-Kristian Jenssen, Staal Amund Vinterbo, Lucila Ohno-Machado:
A primer on gene expression and microarrays for machine learning researchers. J. Biomed. Informatics 37(4): 293-303 (2004) - [j19]Szymon Jaroszewicz, Dan A. Simovici, Winston Patrick Kuo, Lucila Ohno-Machado:
The Goodman-Kruskal coefficient and its applications in genetic diagnosis of cancer. IEEE Trans. Biomed. Eng. 51(7): 1095-1102 (2004) - [c46]Heimar F. Marin, Eduardo Massad, Eduardo P. Marques, Lucila Ohno-Machado:
International Training in Health Informatics: A Brazilian Experience. MedInfo 2004: 898-902 - 2003
- [j18]Andreas Alexander Albrecht, Staal Amund Vinterbo, Lucila Ohno-Machado:
An Epicurean learning approach to gene-expression data classification. Artif. Intell. Medicine 28(1): 75-87 (2003) - [j17]Tomohiro Sawa, Lucila Ohno-Machado:
A neural network-based similarity index for clustering DNA microarray data. Comput. Biol. Medicine 33(1): 1-15 (2003) - [c45]David A. Klapper, Joshua Weaver, Hubert Fernandez, Lucila Ohno-Machado:
Classification of Movement States in Parkinson's Disease Using a Wearable Ambulatory Monitor. AMIA 2003 - [c44]Tomohiro Sawa, Masaharu Okahara, Masayuki Santo, Ulrich Schmidt, Yoshinori Nakata, Shigeho Morita, Lucila Ohno-Machado:
Preoperative Information Management System using Wireless PDAs. AMIA 2003 - [c43]Lucila Ohno-Machado, Winston Patrick Kuo:
Stochastic Algorithms for Gene Expression Analysis (Invited Talk). SAGA 2003: 39-49 - 2002
- [j16]Winston Patrick Kuo, Tor-Kristian Jenssen, Atul J. Butte, Lucila Ohno-Machado, Isaac S. Kohane:
Analysis of matched mRNA measurements from two different microarray technologies. Bioinform. 18(3): 405-412 (2002) - [j15]Tomohiro Sawa, Lucila Ohno-Machado:
Generation of Dynamically Configured Check Lists for Intra-Operative Problems: Using a Set Covering Algorithm. J. Am. Medical Informatics Assoc. 9(Supplement): 28-33 (2002) - [j14]Stephan Dreiseitl, Staal Amund Vinterbo, Lucila Ohno-Machado:
Disambiguation Data: Extracting Information from Anonymized Sources. J. Am. Medical Informatics Assoc. 9(Supplement): 110-114 (2002) - [j13]Lucila Ohno-Machado, Staal Amund Vinterbo, Stephan Dreiseitl:
Effects of Data Anonymization by Cell Suppression on Descriptive Statistics and Predictive Modeling Performance. J. Am. Medical Informatics Assoc. 9(Supplement): 115-119 (2002) - [j12]Ju-Han Kim, Isaac S. Kohane, Lucila Ohno-Machado:
Visualization and evaluation of clusters for exploratory analysis of gene expression data. J. Biomed. Informatics 35(1): 25-36 (2002) - [j11]Stephan Dreiseitl, Lucila Ohno-Machado:
Logistic regression and artificial neural network classification models: a methodology review. J. Biomed. Informatics 35(5-6): 352-359 (2002) - [j10]Lucila Ohno-Machado, Staal Amund Vinterbo, Griffin M. Weber:
Classification of gene expression data using fuzzy logic. J. Intell. Fuzzy Syst. 12(1): 19-24 (2002) - [c42]Vishwanath Anantraman, Tarjei S. Mikkelsen, Reshma Khilnani, Vikram S. Kumar, Alex Pentland, Lucila Ohno-Machado:
Open source handheld-based EMR for paramedics working in rural areas. AMIA 2002 - [c41]Winston Patrick Kuo, Tor-Kristian Jenssen, Peter J. Park, Mark W. Lingen, Rifat Hasina, Lucila Ohno-Machado:
Gene expression levels in different stages of progression in oral squamous cell carcinoma. AMIA 2002 - [c40]Lucila Ohno-Machado, Heimar F. Marin, Eduardo P. Marques, Eduardo Massad, Marivan S. Abrahao, Hamish S. F. Fraser:
Training in Medical Informatics in Northeastern Brazil. AMIA 2002 - [c39]Lucila Ohno-Machado, Staal Amund Vinterbo, Stephan Dreiseitl, Tor-Kristian Jenssen, Winston Patrick Kuo:
Comparing imperfect measurements with the Bland-Altman technique: application in gene expression analysis. AMIA 2002 - [c38]Heta N. Ray, Aziz A. Boxwala, Vishwanath Anantraman, Lucila Ohno-Machado:
Providing context-sensitive decision-support based on WHO guidelines. AMIA 2002 - [c37]Tomohiro Sawa, Yoshinori Nakata, Tetsuya Sakamoto, Kunio Suwa, Shigeho Morita, Lucila Ohno-Machado:
Pharmacokinetic Simulation of Muscle Relaxants: Prediction of Onset Based on Potency. AMIA 2002 - [c36]Agnieszka Szot, Darius Jazayeri, Francine L. Jacobson, Lucila Ohno-Machado, Laura M. Smeaton, Hamish Fraser:
Evaluation of the Diagnostic Accuracy of Chest X-rays Acquired Using a Digital Camera for Low-cost Teleradiology. AMIA 2002 - [c35]Griffin M. Weber, Staal Amund Vinterbo, Lucila Ohno-Machado:
Building an asynchronous web-based tool for machine learning classification. AMIA 2002 - [c34]Andreas Alexander Albrecht, Staal Amund Vinterbo, C. K. Wong, Lucila Ohno-Machado:
A Simulated Annealing and Resampling Method for Training Perceptrons to Classify Gene-Expression Data. ICANN 2002: 401-407 - 2001
- [j9]Samuel J. Wang, Lucila Ohno-Machado, Hamish S. F. Fraser, R. Lee Kennedy:
Using patient-reportable clinical history factors to predict myocardial infarction. Comput. Biol. Medicine 31(1): 1-13 (2001) - [j8]Stephan Dreiseitl, Lucila Ohno-Machado, Harald Kittler, Staal Amund Vinterbo, Holger Billhardt, Michael Binder:
A Comparison of Machine Learning Methods for the Diagnosis of Pigmented Skin Lesions. J. Biomed. Informatics 34(1): 28-36 (2001) - [j7]Lucila Ohno-Machado:
Modeling Medical Prognosis: Survival Analysis Techniques. J. Biomed. Informatics 34(6): 428-439 (2001) - [c33]Vishwanath Anantraman, Griffin M. Weber, Hamish Fraser, Heimar F. Marin, Eduardo P. Marques, Eduardo Massad, Lucila Ohno-Machado:
International Training in Medical Informatics: The Second Year of the Brazil/USA Project. AMIA 2001 - [c32]Nachman Ash, Omolola Ogunyemi, Qing T. Zeng, Lucila Ohno-Machado:
Finding appropriate clinical trials: evaluating encoded eligibility criteria with incomplete data. AMIA 2001 - [c31]Stephan Dreiseitl, Staal Amund Vinterbo, Lucila Ohno-Machado:
Disambiguation data: extracting information from anonymized sources. AMIA 2001 - [c30]Lucila Ohno-Machado, Staal Amund Vinterbo, Stephan Dreiseitl:
Effects of data anonymization by cell suppression on descriptive statistics and predictive modeling performance. AMIA 2001 - [c29]Tomohiro Sawa, Lucila Ohno-Machado:
Generation of dynamically configured check lists for intra-operative problems using a set of covering algorithms. AMIA 2001 - [c28]Staal Amund Vinterbo, Lucila Ohno-Machado, Stephan Dreiseitl:
Hiding information by cell suppression. AMIA 2001 - [c27]Lucila Ohno-Machado, Heimar F. Marin, Eduardo P. Marques, Eduardo Massad, Robert A. Greenes:
Training in Medical Informatics: Combining Onsite and Online Instruction. MedInfo 2001: 1066-1070 - [c26]Ju-Han Kim, Lucila Ohno-Machado, Isaac S. Kohane:
Unsupervised Learning from Complex Data: The Matrix Incision Tree Algorithm. Pacific Symposium on Biocomputing 2001: 30-41 - 2000
- [j6]Staal Amund Vinterbo, Lucila Ohno-Machado:
A genetic algorithm approach to multi-disorder diagnosis. Artif. Intell. Medicine 18(2): 117-132 (2000) - [c25]Felipe Atienza, Nieves Martínez-Alzamora, José A. De Velasco, Stephan Dreiseitl, Lucila Ohno-Machado:
Risk stratification in heart failure using artificial neural networks. AMIA 2000 - [c24]Linda K. Goodwin, Sean Maher, Lucila Ohno-Machado, Mary Ann Iannacchione, Patrick Crockett, Stephan Dreiseitl, Staal Amund Vinterbo, W. Edward Hammond:
Building knowledge in a complex preterm birth problem domain. AMIA 2000 - [c23]Ronilda C. Lacson, Lucila Ohno-Machado:
Major complications after angioplasty in patients with chronic renal failure: a comparison of predictive models. AMIA 2000 - [c22]Lucila Ohno-Machado, Aziz A. Boxwala, Hamish Fraser, Robert A. Greenes, Isaac S. Kohane, Heimar F. Marin, Eduardo P. Marques, Eduardo Massad, Beatriz H. Rocha, Roberto A. Rocha, Laura M. Smeaton, Peter Szolovits:
First Steps Towards Implementing an International Training Program in Medical Informatics: The Brazil/USA Project. AMIA 2000 - [c21]Lucila Ohno-Machado, Ronilda Lacson, Eduardo Massad:
Decision trees and fuzzy logic: a comparison of models for the selection of measles vaccination strategies in Brazil. AMIA 2000 - [c20]Mor Peleg, Aziz A. Boxwala, Omolola Ogunyemi, Qing T. Zeng, Samson W. Tu, Ronilda Lacson, Elmer V. Bernstam, Nachman Ash, Peter Mork, Lucila Ohno-Machado, Edward H. Shortliffe, Robert A. Greenes:
GLIF3: the evolution of a guideline representation format. AMIA 2000 - [c19]Frederic S. Resnic, Jeffrey J. Popma, Lucila Ohno-Machado:
Development and evaluation of models to predict death and myocardial infarction following coronary angioplasty and stenting. AMIA 2000 - [c18]Samuel J. Wang, Gilad J. Kuperman, Lucila Ohno-Machado, Andrew B. Onderdonk, Heidi Sandige, David W. Bates:
Using electronic data to predict the probability of true bacteremia from positive blood cultures. AMIA 2000
1990 – 1999
- 1999
- [j5]Aleksander Øhrn, Lucila Ohno-Machado:
Using Boolean reasoning to anonymize databases. Artif. Intell. Medicine 15(3): 235-254 (1999) - [c17]Stephan Dreiseitl, Lucila Ohno-Machado:
Self-Organizing Maps for Visualization of Medical Data Sets. AMIA 1999 - [c16]Stephan Dreiseitl, Lucila Ohno-Machado, Staal Amund Vinterbo:
Evaluating variable selection methods for diagnosis of myocardial infarction. AMIA 1999 - [c15]Hamish S. F. Fraser, Lucila Ohno-Machado, Vincent Carey, Gregory Sharp, Shapur Naimi:
Evaluation of Guidelines to Help Patients Recognize Myocardial Infarction. AMIA 1999 - [c14]Robert A. Greenes, Aziz A. Boxwala, William N. Sloan, Lucila Ohno-Machado, Stephan R. A. Deibel:
A framework and tools for authoring, editing, documenting, sharing, searching, navigating, and executing computer-based clinical guidelines. AMIA 1999 - [c13]Sandra Kogan, Lucila Ohno-Machado, Aziz A. Boxwala, Jeanne Guillemin, Jeannie Tam, Kathleen Keefe, Thomas DiCesare, Jonathan L. Schaffer, Robert A. Greenes:
HealthAware: A Consumer Health Information Destination Which Links to a Health Care Delivery Network. AMIA 1999 - [c12]Lucila Ohno-Machado, Staal Amund Vinterbo, Aleksander Øhrn, Stephan Dreiseitl:
Clinical Data Processing Tools: A Machine Learning Resource. AMIA 1999 - [c11]Lucila Ohno-Machado, Samuel J. Wang, Perry Mar, Aziz A. Boxwala:
Decision support for clinical trial eligibility determination in breast cancer. AMIA 1999 - [c10]Gregory Sharp, Lucila Ohno-Machado, Hamish Fraser:
The C-Index as a Selection Tool in Decision Tree Construction: An Example in Myocardial Infarction. AMIA 1999 - [c9]Staal Amund Vinterbo, Lucila Ohno-Machado:
A genetic algorithm to select variables in logistic regression: example in the domain of myocardial infarction. AMIA 1999 - [c8]Samuel J. Wang, Lucila Ohno-Machado, Perry Mar, Aziz A. Boxwala, Robert A. Greenes:
Enhancing Arden Syntax for Clinical Trial Eligibility Criteria. AMIA 1999 - 1998
- [j4]Lucila Ohno-Machado, John H. Gennari, Shawn N. Murphy, Nilesh L. Jain, Samson W. Tu, Diane E. Oliver, Edward Pattison-Gordon, Robert A. Greenes, Edward H. Shortliffe, G. Octo Barnett:
Research Paper: The GuideLine Interchange Format: A Model for Representing Guidelines. J. Am. Medical Informatics Assoc. 5(4): 357-372 (1998) - [c7]Lucila Ohno-Machado, Aziz A. Boxwala, Jeanne Guillemin, Kathy Keefe, Gregory Sharp, Todd Rowland, John P. Ehresman, Jeannie Tam, Luke Sato, Robert A. Greenes:
Linking Health Education and Health Care Service Information via the WWW: The HealthAware Project. AMIA 1998 - [c6]Lucila Ohno-Machado, Hamish S. F. Fraser, Aleksander Øhrn:
Improving machine learning performance by removing redundant cases in medical data sets. AMIA 1998 - [c5]Aleksander Øhrn, Lucila Ohno-Machado, Todd Rowland:
Building manageable rough set classifiers. AMIA 1998 - [c4]Todd Rowland, Lucila Ohno-Machado, Aleksander Øhrn:
Comparison of multiple prediction models for ambulation following spinal cord injury. AMIA 1998 - [c3]Lucila Ohno-Machado, Donald Bialek:
Diagnosing Breast Cancer from FNAs: Variable Relevance in Neural Network and Logistic Regression Models. MedInfo 1998: 537-540 - 1997
- [j3]Lucila Ohno-Machado:
A comparison of Cox proportional hazards and artificial neural network models for medical prognosis. Comput. Biol. Medicine 27(1): 55-65 (1997) - [j2]Lucila Ohno-Machado, Mark A. Musen:
Sequential versus standard neural networks for pattern recognition: An example using the domain of coronary heart disease. Comput. Biol. Medicine 27(4): 267-281 (1997) - [j1]Lucila Ohno-Machado, Mark A. Musen:
Modular Neural Networks for Medical Prognosis: Quantifying the Benefits of Combining Neural Networks for Survival Prediction. Connect. Sci. 9(1): 71-86 (1997) - [c2]Lucila Ohno-Machado, Aziz A. Boxwala, John P. Ehresman, Darrell N. Smith, Robert A. Greenes:
A virtual repository approach to clinical and utilization studies: application in mammography as alternative to a national database. AMIA 1997 - 1995
- [c1]Lucila Ohno-Machado, Mark A. Musen:
Learning Rare Categories in Backpropagation. SBIA 1995: 201-209
Coauthor Index
[j182] [j180] [j174] [j172] [c117] [c115] [j168] [j167] [c114] [j165] [j164] [j161] [j159] [c111] [c109] [j154] [i6] [j134] [j133] [j127] [c106] [c103] [c100] [c97] [j119] [j115] [c87] [c86] [c85] [j113] [j106] [j105] [j104] [j102] [p1] [j98] [j96] [j88] [j87] [c77] [c75] [j86] [j83] [j80] [j76] [j75] [c73] [c72] [c71] [j72] [j71] [j67] [j63] [c67] [c65] [c64] [c60] [c59] [c58] [c57] [i2] [j47]
Hyeon-Eui Kim
aka: Hyeoneui Kim
aka: Hyeoneui Kim
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