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ORCIDErgin Soysal
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2010 – 2019
- 2019
[j7]Amber Stubbs, Michele Filannino, Ergin Soysal, Samuel Henry
, Özlem Uzuner:
Cohort selection for clinical trials: n2c2 2018 shared task track 1. J. Am. Medical Informatics Assoc. 26(11): 1163-1171 (2019)- [c9]Ergin Soysal, Jeremy L. Warner, Jingqi Wang, Min Jiang, Krysten Harvey, Sandeep Kumar Jain, Xiao Dong, Hsing-yi Song, Harish Siddhanamatha, Liwei Wang, Qi Dai, Qingxia Chen, Xianglin Du, Cui Tao, Ping Yang, Joshua Charles Denny, Hongfang Liu, Hua Xu:
Developing Customizable Cancer Information Extraction Modules for Pathology Reports Using CLAMP. MedInfo 2019: 1041-1045 - 2018
- [j6]Xiaoling Chen, Anupama E. Gururaj, Ibrahim Burak Özyurt, Ruiling Liu, Ergin Soysal, Trevor Cohen, Firat Tiryaki, Yueling Li, Nansu Zong, Min Jiang, Deevakar Rogith, Mandana Salimi, Hyeon-Eui Kim, Philippe Rocca-Serra, Alejandra N. González-Beltrán, Claudiu Farcas, Todd Johnson, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Ian Fore, Lucila Ohno-Machado, Jeffrey S. Grethe, Hua Xu:
DataMed - an open source discovery index for finding biomedical datasets. J. Am. Medical Informatics Assoc. 25(3): 300-308 (2018) - [j5]Ergin Soysal, Jingqi Wang, Min Jiang, Yonghui Wu, Serguei Pakhomov, Hongfang Liu, Hua Xu:
CLAMP - a toolkit for efficiently building customized clinical natural language processing pipelines. J. Am. Medical Informatics Assoc. 25(3): 331-336 (2018) - 2017
- [j4]Yonghui Wu, Joshua C. Denny, S. Trent Rosenbloom, Randolph A. Miller, Dario A. Giuse, Lulu Wang, Carmelo Blanquicett, Ergin Soysal, Jun Xu, Hua Xu:
A long journey to short abbreviations: developing an open-source framework for clinical abbreviation recognition and disambiguation (CARD). J. Am. Medical Informatics Assoc. 24(e1): e79-e86 (2017) - [c8]Hua Xu, Ergin Soysal, Jingqi Wang, Min Jiang, Yonghui Wu:
CLAMP - A User-Centric Clinical Natural Language Processing Toolkit. AMIA 2017 - [c7]Ergin Soysal, Jeremy L. Warner, Joshua C. Denny, Hua Xu:
Identifying Metastases related Information from Pathology Reports of Lung Cancer Patients. CRI 2017 - 2016
- [j3]Yaoyun Zhang, Heng-Yi Wu, Jun Xu, Jingqi Wang, Ergin Soysal, Lang Li, Hua Xu:
Leveraging syntactic and semantic graph kernels to extract pharmacokinetic drug drug interactions from biomedical literature. BMC Syst. Biol. 10(S-3): 67 (2016) - [c6]Jeffrey S. Grethe, Ibrahim Burak Özyurt, Hua Xu, Xiaoling Chen, Ruiling Liu, Ergin Soysal, Anupama E. Gururaj, Hyeon-Eui Kim, Trevor Cohen, Todd R. Johnson, Mandana Salimi, Saeid Pournejati, Min Jiang, Claudiu Farcas, Alejandra N. González-Beltrán, Philippe Rocca-Serra, Muhamamd F. Amith, Cui Tao, Ian Fore, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Lucila Ohno-Machado:
A Scalable Dataset Indexing Infrastructure for the bioCADDIE Data Discovery System. AMIA 2016 - [c5]Hua Xu, Jeffrey S. Grethe, Xiaoling Chen, Ruiling Liu, Ergin Soysal, Anupama E. Gururaj, Yueling Li, Ibrahim Burak Özyurt, Hyeon-Eui Kim, Trevor Cohen, Todd R. Johnson, Mandana Salimi, Saeid Pournejati, Min Jiang, Claudiu Farcas, Alejandra N. González-Beltrán, Philippe Rocca-Serra, Muhamamd F. Amith, Cui Tao, Ian Fore, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Lucila Ohno-Machado:
Development of DataMed, a Data Discovery Index Prototype by bioCADDIE: Laying the Groundwork for Biomedical Data Discovery. AMIA 2016 - 2015
- [j2]Liang-Chin Huang, Ergin Soysal, W. Jim Zheng, Zhongming Zhao, Hua Xu, Jingchun Sun:
A weighted and integrated drug-target interactome: drug repurposing for schizophrenia as a use case. BMC Syst. Biol. 9(S-4): S2 (2015) - [c4]Ergin Soysal, Jingqi Wang, Min Jiang, Yonghui Wu, Hua Xu:
Clinical Language Annotation, Modeling, and Processing Toolkit (CLAMP) - a user-centric NLP system. AMIA 2015 - [c3]Jun Xu, Yaoyun Zhang, Jingqi Wang, Yonghui Wu, Min Jiang, Ergin Soysal, Hua Xu:
UTH-CCB: The Participation of the SemEval 2015 Challenge - Task 14. SemEval@NAACL-HLT 2015: 311-314 - 2014
- [c2]Ergin Soysal, Jeremy L. Warner, Joshua C. Denny, Hua Xu:
Identifying Metastases from Pathology Reports in Lung Cancer Patients. AMIA 2014 - 2012
- [c1]Öznur Esra Par, Ergin Soysal:
Security Standards for Electronic Health Records. ASONAM 2012: 815-817 - 2010
- [b1]Ergin Soysal:
Ontology based information extraction on free text radiological reports using natural language processing approach ; Serbest metin radyoloji raporlarından, doğal dil işleme yaklaşımları kullanılarak ontoloji temelli enformasyon çıkarımı. Middle East Technical University, Çankaya, Ankara, Turkey, 2010 - [j1]Ergin Soysal, Ilyas Cicekli, Nazife Baykal:
Design and evaluation of an ontology based information extraction system for radiological reports. Comput. Biol. Medicine 40(11-12): 900-911 (2010)
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