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ORCIDPrakash M. Nadkarni
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2010 – 2019
- 2014
[j53]Lemuel R. Waitman, Lauren S. Aaronson, Prakash M. Nadkarni, Daniel W. Connolly
, James R. Campbell:
Brief communication: The Greater Plains Collaborative: a PCORnet Clinical Research Data Network. J. Am. Medical Informatics Assoc. 21(4): 637-641 (2014)- 2013
- [j52]Lucila Ohno-Machado, Prakash M. Nadkarni, Kevin B. Johnson:
Natural language processing: algorithms and tools to extract computable information from EHRs and from the biomedical literature. J. Am. Medical Informatics Assoc. 20(5): 805 (2013) - 2012
- [j51]Prakash M. Nadkarni, Chirag Parikh:
An eUtils toolset and its use for creating a pipeline to link genomics and proteomics analyses to domain-specific biomedical literature. J. Clin. Bioinform. 2: 9 (2012) - [j50]Hemant Shah, Raymond D. Allard, Robert Enberg, Ganesh Krishnan, Patricia Williams, Prakash M. Nadkarni:
Requirements for guidelines systems: implementation challenges and lessons from existing software-engineering efforts. BMC Medical Informatics Decis. Mak. 12: 16 (2012) - 2011
- [j49]Rachel L. Richesson, Prakash M. Nadkarni:
Data standards for clinical research data collection forms: current status and challenges. J. Am. Medical Informatics Assoc. 18(3): 341-346 (2011) - [j48]Wendy Webber Chapman, Prakash M. Nadkarni, Lynette Hirschman, Leonard W. D'Avolio, Guergana K. Savova, Özlem Uzuner:
Overcoming barriers to NLP for clinical text: the role of shared tasks and the need for additional creative solutions. J. Am. Medical Informatics Assoc. 18(5): 540-543 (2011) - [j47]Prakash M. Nadkarni, Lucila Ohno-Machado, Wendy Webber Chapman:
Natural language processing: an introduction. J. Am. Medical Informatics Assoc. 18(5): 544-551 (2011) - [j46]Prakash M. Nadkarni, Rowena Kemp, Chirag Parikh:
Leveraging a clinical research information system to assist biospecimen data and workflow management: a hybrid approach. J. Clin. Bioinform. 1: 22 (2011) - [j45]Richard Morse, Prakash M. Nadkarni, David A. Schoenfeld, Dianne M. Finkelstein:
Web-browser encryption of personal health information. BMC Medical Informatics Decis. Mak. 11: 70 (2011) - [c14]Hemant Shah, Ganesh Krishnan, Patricia Williams, Arthur Vogler, Raymond D. Allard, Prakash M. Nadkarni:
Interoperability and Integration Considerations for a Process-Oriented Clinical Decision Support System. SERVICES 2011: 437-442 - 2010
- [j44]Prakash M. Nadkarni, Luis N. Marenco:
Implementing description-logic rules for SNOMED-CT attributes through a table-driven approach. J. Am. Medical Informatics Assoc. 17(2): 182-184 (2010) - [j43]Prakash M. Nadkarni, Jonathan A. Darer:
Migrating existing clinical content from ICD-9 to SNOMED. J. Am. Medical Informatics Assoc. 17(5): 602-607 (2010) - [j42]Prakash M. Nadkarni:
Drug safety surveillance using de-identified EMR and claims data: issues and challenges. J. Am. Medical Informatics Assoc. 17(6): 671-674 (2010) - [j41]Prakash M. Nadkarni, Jonathan D. Darer:
Determining correspondences between high-frequency MedDRA concepts and SNOMED: a case study. BMC Medical Informatics Decis. Mak. 10: 66 (2010)
2000 – 2009
- 2009
- [j40]Luis N. Marenco, Rixin Wang, Prakash M. Nadkarni:
Model Formulation: Automated Database Mediation Using Ontological Metadata Mappings. J. Am. Medical Informatics Assoc. 16(5): 723-737 (2009) - 2007
- [j39]Chiquito J. Crasto, Luis N. Marenco, Nian Liu, Thomas M. Morse, Kei-Hoi Cheung, Peter C. Lai, Gautam Bahl, Peter Masiar, Hugo Y. K. Lam, Ernest Lim, Huajun Chen, Prakash M. Nadkarni, Michele Migliore, Perry L. Miller, Gordon M. Shepherd:
SenseLab: new developments in disseminating neuroscience information. Briefings Bioinform. 8(3): 150-162 (2007) - [j38]Valentin Dinu, Prakash M. Nadkarni:
Guidelines for the effective use of entity-attribute-value modeling for biomedical databases. Int. J. Medical Informatics 76(11-12): 769-779 (2007) - [j37]Prakash M. Nadkarni, Randolph A. Miller:
Service-oriented Architecture in Medical Software: Promises and Perils. J. Am. Medical Informatics Assoc. 14(2): 244-246 (2007) - 2006
- [j36]Valentin Dinu, Prakash M. Nadkarni, Cynthia Brandt:
Pivoting approaches for bulk extraction of Entity-Attribute-Value data. Comput. Methods Programs Biomed. 82(1): 38-43 (2006) - 2005
- [j35]Matthew Holford, Naixin Li, Prakash M. Nadkarni, Hongyu Zhao:
VitaPad: visualization tools for the analysis of pathway data. Bioinform. 21(8): 1596-1602 (2005) - [j34]Aniruddha M. Deshpande, Richard N. Shiffman, Prakash M. Nadkarni:
Metadata-driven Delphi rating on the Internet. Comput. Methods Programs Biomed. 77(1): 49-56 (2005) - [c13]Stephanie Argraves, Cynthia Brandt, Roy Money, Prakash M. Nadkarni:
Informatics Tools to Improve Clinical Research. AMIA 2005 - [c12]Cynthia Brandt, Charles Lu, Prakash M. Nadkarni:
Automating Identification of Adverse Events Related to Abnormal Lab Results Using Standard Vocabularies. AMIA 2005 - [c11]Kexin Sun, Prakash M. Nadkarni, Cynthia Brandt:
Metadata Driven Generation of Reports for Clinical Studies. AMIA 2005 - 2004
- [j33]Prakash M. Nadkarni:
Evolving standards for clinical content in biomedicine: overview and lessons. Int. J. Serv. Stand. 1(1): 112-124 (2004) - [j32]Cynthia Brandt, Rohit Gadagkar, Cesar Rodriguez, Prakash M. Nadkarni:
Application of Information Technology: Managing Complex Change in Clinical Study Metadata. J. Am. Medical Informatics Assoc. 11(5): 380-391 (2004) - [j31]Luis N. Marenco, Tzuu-Yi Wang, Gordon M. Shepherd, Perry L. Miller, Prakash M. Nadkarni:
Model Formulation: QIS: A Framework for Biomedical Database Federation. J. Am. Medical Informatics Assoc. 11(6): 523-534 (2004) - 2003
- [j30]Aniruddha M. Deshpande, Cynthia Brandt, Prakash M. Nadkarni:
Temporal query of attribute-value patient data: utilizing the constraints of clinical studies. Int. J. Medical Informatics 70(1): 59-77 (2003) - [j29]John M. Fisk, Pradeep Mutalik, Forrest W. Levin, Joseph Erdos, Caroline Taylor, Prakash M. Nadkarni:
Model Formulation: Integrating Query of Relational and Textual Data in Clinical Databases: A Case Study. J. Am. Medical Informatics Assoc. 10(1): 21-38 (2003) - [j28]Luis N. Marenco, Nicholas P. Tosches, Chiquito J. Crasto, Gordon M. Shepherd, Perry L. Miller, Prakash M. Nadkarni:
Application of Information Technology: Achieving Evolvable Web-Database Bioscience Applications Using the EAV/CR Framework: Recent Advances. J. Am. Medical Informatics Assoc. 10(5): 444-453 (2003) - [j27]Chiquito J. Crasto, Luis N. Marenco, Michele Migliore, Buqing Mao, Prakash M. Nadkarni, Perry L. Miller, Gordon M. Shepherd:
Text mining neuroscience journal articles to populate neuroscience databases. Neuroinformatics 1(3): 215-237 (2003) - [c10]Cynthia Brandt, Aniruddha M. Deshpande, Charles Lu, Gowri Ananth, Kexin Sun, Rohit Gadagkar, Richard Morse, Cesar Rodriguez, Perry L. Miller, Prakash M. Nadkarni:
TrialDB: A Web-based Clinical Study Data Management System AMIA 2003 Open Source Expo. AMIA 2003 - [c9]Chiquito J. Crasto, Thomas M. Morse, Michele Migliore, Prakash M. Nadkarni, Michael L. Hines, Douglas E. Brash, Perry L. Miller, Gordon M. Shepherd:
Creating Knowledgebases to Text-Mine PUBMED Articles Using Clustering Techniques. AMIA 2003 - 2002
- [j26]Cynthia Brandt, Richard Morse, Keri Matthews, Kexin Sun, Aniruddha M. Deshpande, Rohit Gadagkar, Dorothy B. Cohen, Perry L. Miller, Prakash M. Nadkarni:
Metadata-driven creation of data marts from an EAV-modeled clinical research database. Int. J. Medical Informatics 65(3): 225-241 (2002) - [j25]Aniruddha M. Deshpande, Cynthia Brandt, Prakash M. Nadkarni:
Application of Information Technology: Metadata-driven Ad Hoc Query of Patient Data: Meeting the Needs of Clinical Studies. J. Am. Medical Informatics Assoc. 9(4): 369-382 (2002) - 2001
- [j24]Cynthia Brandt, Prakash M. Nadkarni:
Web-based UMLS concept retrieval by automatic text scanning: a comparison of two methods. Comput. Methods Programs Biomed. 64(1): 37-43 (2001) - [j23]Perry L. Miller, Prakash M. Nadkarni, Michael S. Singer, Luis N. Marenco, Michael L. Hines, Gordon M. Shepherd:
Synthesis of Research: Integration of Multidisciplinary Sensory Data: A Pilot Model of the Human Brain Project Approach. J. Am. Medical Informatics Assoc. 8(1): 34-48 (2001) - [j22]Prakash M. Nadkarni, Roland Chen, Cynthia Brandt:
Research Paper: UMLS Concept Indexing for Production Databases: A Feasibility Study. J. Am. Medical Informatics Assoc. 8(1): 80-91 (2001) - [j21]Pradeep Mutalik, Aniruddha M. Deshpande, Prakash M. Nadkarni:
Research Paper: Use of General-purpose Negation Detection to Augment Concept Indexing of Medical Documents: A Quantitative Study Using the UMLS. J. Am. Medical Informatics Assoc. 8(6): 598-609 (2001) - [c8]Chiquito J. Crasto, Luis N. Marenco, Prakash M. Nadkarni, Perry L. Miller, Gordon M. Shepherd:
A Pilot Approach to Automated and Efficient Transfer of Neuroscience Data from Journal Articles to Searchable Databases. AMIA 2001 - [c7]Aniruddha M. Deshpande, Prakash M. Nadkarni:
Metadata-driven Ad Hoc Query of Clinical Studies Data. AMIA 2001 - [c6]Sanjay K. Fernando, Cynthia Brandt, Prakash M. Nadkarni:
Generation of pedigree diagrams for web display using scalable vector graphics from a clinical trials database. AMIA 2001 - [c5]Prakash M. Nadkarni, Luis N. Marenco:
Easing the transition between attribute-value databases and conventional databases for scientific data. AMIA 2001 - 2000
- [j20]Peter L. Perrotta, Prakash M. Nadkarni:
Integration of a hematopoietic progenitor cell program using the ACT/DB database system. Comput. Methods Programs Biomed. 61(3): 195-207 (2000) - [j19]H. David Stein, Prakash M. Nadkarni, Joseph Erdos, Perry L. Miller:
Research Paper: Exploring the Degree of Concordance of Coded and Textual Data in Answering Clinical Queries from a Clinical Data Repository. J. Am. Medical Informatics Assoc. 7(1): 42-54 (2000) - [j18]Prakash M. Nadkarni, Cynthia Brandt, Luis N. Marenco:
Application of Information Technology: WebEAV: Automatic Metadata-driven Generation of Web Interfaces to Entity-Attribute-Value Databases. J. Am. Medical Informatics Assoc. 7(4): 343-356 (2000) - [j17]Roland Chen, Prakash M. Nadkarni, Luis N. Marenco, Forrest W. Levin, Joseph Erdos, Perry L. Miller:
Research Paper: Exploring Performance Issues for a Clinical Database Organized Using an Entity-Attribute-Value Representation. J. Am. Medical Informatics Assoc. 7(5): 475-487 (2000) - [j16]Emmanouil Skoufos, Luis N. Marenco, Prakash M. Nadkarni, Perry L. Miller, Gordon M. Shepherd:
Olfactory Receptor Database: a sensory chemoreceptor resource. Nucleic Acids Res. 28(1): 341-343 (2000) - [c4]Luis N. Marenco, Prakash M. Nadkarni, Perry L. Miller, Gordon M. Shepherd:
The SenseLab Database: System Design Towards Interoperability. AMIA 2000
1990 – 1999
- 1999
- [j15]Prakash M. Nadkarni, Luis N. Marenco, Roland Chen, Emmanouil Skoufos, Gordon M. Shepherd, Perry L. Miller:
Application of Information Technology: Organization of Heterogeneous Scientific Data Using the EAV/CR Representation. J. Am. Medical Informatics Assoc. 6(6): 478-493 (1999) - [j14]Emmanouil Skoufos, Matthew D. Healy, Michael S. Singer, Prakash M. Nadkarni, Perry L. Miller, Gordon M. Shepherd:
Olfactory Receptor Database: a database of the largest eukaryotic gene family. Nucleic Acids Res. 27(1): 343-345 (1999) - [c3]Luis N. Marenco, Prakash M. Nadkarni, Emmanouil Skoufos, Gordon M. Shepherd, Perry L. Miller:
Neuronal database integration: the Senselab EAV data model. AMIA 1999 - 1998
- [j13]Prakash M. Nadkarni:
Mapmerge: merge genomic maps. Bioinform. 14(4): 310-316 (1998) - [j12]Kei-Hoi Cheung, Prakash M. Nadkarni, Dong-Guk Shin:
A metadata approach to query interoperation between molecular biology databases. Bioinform. 14(6): 486-497 (1998) - [j11]Prakash M. Nadkarni, Cynthia Brandt, Sandra J. Frawley, Frederick G. Sayward, Robin Einbinder, Daniel Zelterman, Lee Schacter, Perry L. Miller:
Application of Technology: Managing Attribute-Value Clinical Trials Data Using the ACT/DB Client-Server Database System. J. Am. Medical Informatics Assoc. 5(2): 139-151 (1998) - [j10]Prakash M. Nadkarni:
Application of Information Technology: Data Extraction and Ad Hoc Query of an Entity - Attribute - Value Database. J. Am. Medical Informatics Assoc. 5(6): 511-527 (1998) - [c2]Cynthia Brandt, Prakash M. Nadkarni, Lee Schacter, Daniel Zelterman, Yuli Li, John M. Fisk, Edward K. Shultz, Perry L. Miller:
ACT/DB: A Clinical Trials Database Being Refined on a Pilot Basis at Two Medical Centers. AMIA 1998 - [c1]Kei-Hoi Cheung, Prakash M. Nadkarni, Perry L. Miller, Dong-Guk Shin:
Automatic query mapping among genomic databases: a pilot exploration. AMIA 1998 - 1997
- [j9]Prakash M. Nadkarni:
Mapdiff: determining differences between two genomic maps. Comput. Appl. Biosci. 13(3): 217-225 (1997) - 1996
- [j8]Bret E. Peterson, Matthew D. Healy, Prakash M. Nadkarni, Perry L. Miller, Gordon M. Shepherd:
Application of Technology: ModelDB: An Environment for Running and Storing Computational Models and Their Results Applied to Neuroscience. J. Am. Medical Informatics Assoc. 3(6): 389-398 (1996) - [j7]Prakash M. Nadkarni, Kei-Hoi Cheung, C. Castiglione, Perry L. Miller, Kenneth K. Kidd:
DNA Workbench: A Database Package to Manage Regional Physical Mapping. J. Comput. Biol. 3(2): 319-329 (1996) - 1995
- [j6]Perry L. Miller, Prakash M. Nadkarni, Kenneth K. Kidd, Kei-Hoi Cheung, David C. Ward, Amy Banks, Patricia Bray-Ward, Lisa Cupelli, Valerie Herdman, Ivonne Marondel, Kate Montcomery, Beatrice Renault, Sunc-Joo Yoon, Kenneth S. Krauter, Raju Kucherlapati:
Application of Technology: Internet-based Support for Bioscience Research: A Collaborative Genome center for Human Chromosome 12. J. Am. Medical Informatics Assoc. 2(6): 351-364 (1995) - 1994
- [j5]Prakash M. Nadkarni, Stephen T. Reeders, Jing Zhou:
A modification of the ALIGN program to assist visual interpretation of mutated sequences. Comput. Appl. Biosci. 10(3): 361-362 (1994) - 1992
- [j4]Perry L. Miller, Prakash M. Nadkarni, P. A. Bercovitz:
Harnessing networked workstations as a powerful parallel computer: a general paradigm illustrated using three programs for genetic linkage analysis. Comput. Appl. Biosci. 8(2): 141-147 (1992) - [j3]Perry L. Miller, Prakash M. Nadkarni, William R. Pearson:
Comparing machine-independent versus machine-specific parallelization of a software platform for biological sequence comparison. Comput. Appl. Biosci. 8(2): 167-175 (1992) - [j2]Dean F. Sittig, Mark A. Shifman, Prakash M. Nadkarni, Perry L. Miller:
Parallel Computation for Medicine and Biology: Applications of Linda At Yale University. Int. J. High Perform. Comput. Appl. 6(2): 147-163 (1992) - 1991
- [j1]Perry L. Miller, Prakash M. Nadkarni, N. M. Carriero:
Parallel computation and FASTA: confronting the problem of parallel database search for a fast sequence comparison algorithm. Comput. Appl. Biosci. 7(1): 71-78 (1991)
Coauthor Index
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