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ORCIDJournal of Computational Biology, Volume 3
Volume 3, Number 1, Spring 1996
- Pankaj Agarwal, David J. States:
A Bayesian Evolutionary Distance for Parametrically Aligned Sequences. 1-17 - Michael D. Hendy, David Penny:
Complete Families of Linear Invariants for Some Stochastic Models of Sequence Evolution, with and without Molecular Clock Assumption. 19-31 - E. W. Meyers:
Approximate Matching of Network Expressions with Spacers. 33-51 - William E. Hart, Sorin Istrail:
Fast Protein Folding in the Hydrophobic-Hydrophillic Model within Three-Eights of Optimal. 53-96 - Yoshikane Takahashi:
A Mathematical Solution to a Network Designing Problem. 97-141 - R. R. Joshi, K. Krishnanand:
Probabilistic Learning in Immune Network: Weighted Tree Matching Model. 143-162 - Søren Kamaric Riis, Anders Krogh
:
Improving Predicition of Protein Secondary Structure Using Structured Neural Networks and Multiple Sequence Alignments. 163-183 - S. Tsang, Milton H. Saier Jr.:
A Simple Flexible Program for the Computational Analysis of Amyl Acyl Residue Distribution in Proteins: Application to the Distribution of Aromatic versus Aliphatic Hydrophobic Amino Acids in Transmembrane alpha-Helical Spanners of Integral Membrane Transport Proteins. 185-190 - Peter D. Karp, Suzanne M. Paley:
Integrated Access to Metabolic and Genomic Data. 191-212
Volume 3, Number 2, Summer 1996
- Raj K. Singh, Alexander Tropsha, Iosif I. Vaisman:
Delaunay Tessellation of Proteins: Four Body Nearest-Neighbor Propensities of Amino Acid Residues. 213-221 - Mikhail S. Gelfand, L. I. Podolsky, Tatiana V. Astakhova, Mikhail A. Roytberg:
Recognition of Genes in Human DNA Sequences. 223-234 - Bernd Schierwater, Dirk Metzler, Katja Krüger, Bruno Streit:
The Effects of Nested Primer Bindingg Sites on the Reproducibility of PCR: Mathematical Modeling and Simulation Studies. 235-251 - Martijn A. Huynen, Alan S. Perelson, W. A. Vieira, Peter F. Stadler:
Base Pairing Probabilities in a Complete HIV-1 RNA. 253-274 - David Bryant:
Hunting for Trees in Binary Character Sets: Efficient Algorithms for Extraction, Enumeration and Optimization. 275-288 - Ina Koch, Thomas Lengauer, Egon Wanke:
An Algorithm for Finding Maximal Common Subtopologies in a Set of Protein Structures. 289-306 - C. Kelley, G. A. Curchill:
Biases in Amino Acid Replacement Matrices and Alignment Scores Due to Rate Heterogeniety. 307-318 - Prakash M. Nadkarni, Kei-Hoi Cheung, C. Castiglione, Perry L. Miller, Kenneth K. Kidd:
DNA Workbench: A Database Package to Manage Regional Physical Mapping. 319-329
Volume 3, Number 3, Fall 1996
- Ying Xu, Richard J. Mural, Edward C. Uberbacher:
An Iterative Algorithm for Correcting Sequencing Errors in DNA Coding Regions. 333-344 - Ming-Ying Leung, G. M. Marsh, Terence P. Speed:
Over- and Underrepresentation of Short DNA Words in Herpesvirus Genomes. 345-360 - Hiroshi Mamitsuka:
A Learning Method of Hidden Markov Models for Sequence Discrimination. 361-373 - Thomas D. Wu:
A Segment-Based Dynamic Programming Algorithm for Predicting Gene Structure. 375-394 - Emanuel Knill, Alexander Schliep, David C. Torney:
Interpretation of Pooling Experiments Using the Markov Chain Monte Carlo Method. 395-406 - Hugh Salamon, Jorma Tarhio, K. Rønningen, G. Thomson:
On Distinguishing Unique Combinations in Biological Sequences. 407-423 - Richard Arratia, Daniela Martin, Gesine Reinert, Michael S. Waterman:
Poisson Process Approximation for Sequence Repeats and Sequencing by Hybridization. 425-463 - Robert J. Robbins:
Bioinformatics: Essential Infrastructure for Global Biology. 465-478
Volume 3, Number 4, Fall 1996
- R. C. Griffiths, P. Marjoram:
Ancestral Inference from Samples of DNA Sequences with Recombination. 479-502 - Suchendra M. Bhandarkar, Sridhar Chirravuri, Jonathan P. Arnold:
Parallel Computing of Physical Maps--A Comparative Study in SIMD and MIMD Parallelism. 503-528 - R. R. Joshi:
A Self-Organizing Cognitive Network of Antibody Repertoire Development. 529-545 - Cathy H. Wu, Sheng Zhao, Hsi-Lien Chen:
A Protein Class Database Organized with ProSite Protein Groups and PIR Superfamilies. 547-561 - Gene Myers, Sanford Selznick, Zheng Zhang, Webb Miller:
Progressive Multiple Alignment with Constraints. 563-572 - M. Teitelman, Frank H. Eeckman:
Principal Component Analysis and Large-Scale Correlations in Non-Coding Sequences of Human DNA. 573-576
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