


default search action
Ying Xu 0001
Person information
- affiliation: Jilin University, College of Computer Science and Technology, China
- affiliation (2004 - 2011): University of Georgia, Department of Biochemistry and Molecular Biology, Athens, GA, USA
- affiliation (1993 - 2003): Oak Ridge National Laboratory, Life Sciences Division, Computational Biosciences Section, TN, USA
- affiliation (1991 - 1993): Colorado School of Mines, Mathematics and Computer Sciences Department, Golden, CO, USA
- affiliation (1986 - 1991): University of Colorado, Computer Science Department, Boulder, CO, USA
Other persons with the same name
- Ying Xu — disambiguation page
- Ying Xu 0002 — Stanford University, USA
- Ying Xu 0003 — University of Alberta, Alberta Machine Intelligence Institute, Edmonton, AB, Canada
- Ying Xu 0004
— Xi'an Jiaotong University, School of Electronic and Information Engineering, China
Refine list

refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
2020 – today
- 2023
- [j88]Yi Zhou
, Wennan Chang
, Xiaoyu Lu
, Jin Wang
, Chi Zhang
, Ying Xu
:
Acid-Base Homeostasis and Implications to the Phenotypic Behaviors of Cancer. Genom. Proteom. Bioinform. 21(6): 1133-1148 (2023) - [j87]Renbo Tan
, Yi Zhou
, Zheng An
, Ying Xu
:
Cancer is a Survival Process under Persistent Microenvironmental and Cellular Stresses. Genom. Proteom. Bioinform. 21(6): 1260-1265 (2023) - [j86]Lai Xiang, Ying Xu, Jianhui Cui
, Yang Liu, Ruozhou Wang, Guofeng Li:
GM(1,1)-Based Weighted K-Nearest Neighbor Algorithm for Indoor Localization. Remote. Sens. 15(15): 3706 (2023) - 2022
- [j85]Ying Xu, Guofeng Li, Zeyu Li
, Hao Yu, Jianhui Cui
, Jin Wang, Yu Chen:
Smartphone-Based Unconstrained Step Detection Fusing a Variable Sliding Window and an Adaptive Threshold. Remote. Sens. 14(12): 2926 (2022) - [j84]Ying Xu, Xin Chen, Min Liu, Jin Wang, Fangzhao Zhang
, Jianhui Cui
, Hongzhan Zhou:
Spatial-Temporal Relationship Study between NWP PWV and Precipitation: A Case Study of 'July 20' Heavy Rainstorm in Zhengzhou. Remote. Sens. 14(15): 3636 (2022) - [j83]Sifeng He
, Hui Tang
, Zhongyuan Zhu
, Peiyuan Zhang, Ying Xu, Xin Chen
:
A Novel Flexure Piezomotor With Minimized Backward and Nonlinear Motion Effect. IEEE Trans. Ind. Electron. 69(1): 652-662 (2022) - 2020
- [j82]Jin Zhao
, Haodi Feng, Daming Zhu
, Chi Zhang, Ying Xu:
IsoTree: A New Framework for de novo Transcriptome Assembly from RNA-seq Reads. IEEE ACM Trans. Comput. Biol. Bioinform. 17(3): 938-948 (2020) - [j81]Jin Zhao
, Haodi Feng
, Daming Zhu
, Chi Zhang, Ying Xu:
Corrections to "IsoTree: A New Framework for de novo Transcriptome Assembly from RNA-seq Reads". IEEE ACM Trans. Comput. Biol. Bioinform. 17(6): 2197 (2020) - [c50]Hongyang Jiang
, Zhihang Wang, Chaoyi Yin, Peishuo Sun, Ying Xu, Huiyan Sun:
Identification of Cancer Development Related Pathways Based on Co-Expression Analyses. BIBM 2020: 108-114
2010 – 2019
- 2019
- [j80]Huansheng Cao, Qin Ma, Xin Chen, Ying Xu:
DOOR: a prokaryotic operon database for genome analyses and functional inference. Briefings Bioinform. 20(4): 1568-1577 (2019) - [j79]Gaoyang Li
, Huansheng Cao
, Ying Xu:
Structural and functional analyses of microbial metabolic networks reveal novel insights into genome-scale metabolic fluxes. Briefings Bioinform. 20(4): 1590-1603 (2019) - [j78]Jin Zhao, Haodi Feng, Daming Zhu, Chi Zhang, Ying Xu:
DTA-SiST: de novo transcriptome assembly by using simplified suffix trees. BMC Bioinform. 20-S(25): 698 (2019) - [j77]Huiyan Sun
, Liang Chen
, Sha Cao
, Yanchun Liang
, Ying Xu
:
Warburg Effects in Cancer and Normal Proliferating Cells: Two Tales of the Same Name. Genom. Proteom. Bioinform. 17(3): 273-286 (2019) - [j76]Jiedong Li, Hui Tang
, Zelong Wu, Hongcheng Li, Guixin Zhang
, Xin Chen
, Jian Gao
, Ying Xu, Yunbo He
:
A Stable Autoregressive Moving Average Hysteresis Model in Flexure Fast Tool Servo Control. IEEE Trans Autom. Sci. Eng. 16(3): 1484-1493 (2019) - [c49]Hongyang Jiang
, Qiang Huang, Liang Chen
, Zhi Li, Ying Xu, Huiyan Sun, Yi Chang
:
Multi-Classification of Cancer Samples Based on Co-Expression Analyses. BIBM 2019: 197-201 - [c48]Mengfei Li, Ying Xu, Hongwei Li:
Modified Edge-Weighted Centroidal Voronoi Tessellation for Image Segmentation. ISICDM 2019: 161-165 - 2018
- [c47]Zelong Wu, Hui Tang, Xin Chen
, Jian Gao, Yunbo He, Ying Xu, Xun Chen, Suet To, Yangmin Li
, Chengqiang Cui:
High Dynamic Control of a Flexure Fast Tool Servo Using On-line Sequential Extreme Learning Machine. AIM 2018: 604-609 - [c46]Jin Zhao, Haodi Feng, Daming Zhu, Chi Zhang, Ying Xu:
DTAST: A Novel Radical Framework for de Novo Transcriptome Assembly Based on Suffix Trees. ICIC (1) 2018: 740-745 - 2017
- [j75]Sha Cao
, Yi Zhou
, Yue Wu
, Tianci Song, Burair Alsaihati, Ying Xu:
Transcription regulation by DNA methylation under stressful conditions in human cancer. Quant. Biol. 5(4): 328-337 (2017) - [c45]Jin Zhao, Haodi Feng, Daming Zhu, Chi Zhang, Ying Xu:
IsoTree: De Novo Transcriptome Assembly from RNA-Seq Reads - (Extended Abstract). ISBRA 2017: 71-83 - 2016
- [j74]Yinglei Song, Junfeng Qu, Ying Xu, Liming Cai:
A New Graph Theoretic Approach for Protein Threading. Fundam. Informaticae 145(2): 151-170 (2016) - [c44]Yan Wang, Wei Du, Yanchun Liang, Xin Chen, Chi Zhang
, Wei Pang
, Ying Xu:
PUEPro: A Computational Pipeline for Prediction of Urine Excretory Proteins. ADMA 2016: 714-725 - 2015
- [j73]Xizeng Mao, Qin Ma
, Bingqiang Liu, Xin Chen, Hanyuan Zhang, Ying Xu:
Revisiting operons: an analysis of the landscape of transcriptional units in E. coli. BMC Bioinform. 16: 356:1-356:9 (2015) - [j72]Ying Xu:
Carrying out Phylogenetic Analyses through Computational Model Checking. Computer 48(1): 12 (2015) - [j71]Ying Xu:
Editorial from the Editor-in-Chief. IEEE ACM Trans. Comput. Biol. Bioinform. 12(1): 1 (2015) - 2014
- [b1]Ying Xu, Juan Cui, David Puett:
Cancer Bioinformatics. Springer 2014, ISBN 978-1-4939-1380-0, pp. 1-362 - [j70]Qi Liu, Han Zhou, Ruixin Zhu
, Ying Xu, Zhiwei Cao:
Reconsideration of in silico siRNA design from a perspective of heterogeneous data integration: problems and solutions. Briefings Bioinform. 15(2): 292-305 (2014) - [j69]Dorothy A. Hammond, Victor Olman, Ying Xu:
Functional Understanding of the Diverse exon-intron Structures of Human GPCR genes. J. Bioinform. Comput. Biol. 12(1) (2014) - [j68]Xizeng Mao, Qin Ma
, Chuan Zhou, Xin Chen, Hanyuan Zhang, Jincai Yang, Fenglou Mao, Wei Lai, Ying Xu:
DOOR 2.0: presenting operons and their functions through dynamic and integrated views. Nucleic Acids Res. 42(Database-Issue): 654-659 (2014) - [j67]Qin Ma
, Hanyuan Zhang
, Xizeng Mao, Chuan Zhou, Bingqiang Liu, Xin Chen, Ying Xu:
DMINDA: an integrated web server for DNA motif identification and analyses. Nucleic Acids Res. 42(Webserver-Issue): 12-19 (2014) - [j66]Chi Zhang
, Sha Cao
, Ying Xu:
Population dynamics inside cancer biomass driven by repeated hypoxia-reoxygenation cycles. Quant. Biol. 2(3): 85-99 (2014) - [j65]Ying Xu:
Editorial from the Editor-in-Chief. IEEE ACM Trans. Comput. Biol. Bioinform. 11(1): 1-4 (2014) - [j64]Ying Xu:
Reviewer Appreciation Editorial. IEEE ACM Trans. Comput. Biol. Bioinform. 11(4): 613 (2014) - 2013
- [j63]Qin Ma
, Bingqiang Liu, Chuan Zhou, Yanbin Yin
, Guojun Li, Ying Xu:
An integrated toolkit for accurate prediction and analysis of cis-regulatory motifs at a genome scale. Bioinform. 29(18): 2261-2268 (2013) - [j62]Qin Ma
, Ying Xu:
Global Genomic Arrangement of Bacterial Genes Is Closely Tied with the Total Transcriptional Efficiency. Genom. Proteom. Bioinform. 11(1): 66-71 (2013) - [j61]Ying Xu:
Editorial from the New Editor-in-Chief. IEEE ACM Trans. Comput. Biol. Bioinform. 10(1): 1 (2013) - [c43]Ying Xu:
Elucidation of drivers for cancer initiation and metastasis: A data-mining approach. BIBM 2013: 3 - 2012
- [j60]Fenglou Mao, David Williams
, Olga Zhaxybayeva
, Maria S. Poptsova
, Pascal Lapierre, J. Peter Gogarten
, Ying Xu:
Quartet decomposition server: a platform for analyzing phylogenetic trees. BMC Bioinform. 13: 123 (2012) - [j59]Yanbin Yin
, Xizeng Mao, Jincai Yang, Xin Chen, Fenglou Mao, Ying Xu:
dbCAN: a web resource for automated carbohydrate-active enzyme annotation. Nucleic Acids Res. 40(Web-Server-Issue): 445-451 (2012) - 2011
- [j58]Yong Chen, Fenglou Mao, Guojun Li, Ying Xu:
Genome-wide discovery of missing genes in biological pathways of prokaryotes. BMC Bioinform. 12(S-1): S1 (2011) - 2010
- [j57]Fengfeng Zhou
, Ying Xu:
cBar: a computer program to distinguish plasmid-derived from chromosome-derived sequence fragments in metagenomics data. Bioinform. 26(16): 2051-2052 (2010) - [j56]Qi Liu, Juan Cui, Qiang Yang, Ying Xu:
In-silico prediction of blood-secretory human proteins using a ranking algorithm. BMC Bioinform. 11: 250 (2010) - [j55]Ying Xu, Peter W. Markstein:
Foreword: Advances in Computational Systems Bioinformatics. J. Bioinform. Comput. Biol. 8(2) (2010) - [j54]Xingqin Qi
, Guojun Li, Shuguang Li, Ying Xu:
Sorting Genomes by Reciprocal Translocations, Insertions, and Deletions. IEEE ACM Trans. Comput. Biol. Bioinform. 7(2): 365-374 (2010)
2000 – 2009
- 2009
- [j53]Thao T. Tran, Fengfeng Zhou
, Sarah Marshburn, Mark Stead, Sidney R. Kushner
, Ying Xu:
De novo computational prediction of non-coding RNA genes in prokaryotic genomes. Bioinform. 25(22): 2897-2905 (2009) - [j52]Qi Liu, Jinling Huang
, Huiqing Liu, Ping Wan, Xiuzi Ye, Ying Xu:
Analyses of domains and domain fusions in human proto-oncogenes. BMC Bioinform. 10 (2009) - [j51]Fengfeng Zhou
, Victor Olman, Ying Xu:
Large-Scale Analyses of Glycosylation in Cellulases. Genom. Proteom. Bioinform. 7(4): 194-199 (2009) - [j50]Guojun Li, Dongsheng Che, Ying Xu:
A Universal operon Predictor for prokaryotic genomes. J. Bioinform. Comput. Biol. 7(1): 19-38 (2009) - [j49]Ying Xu, Ming Li, Tao Jiang:
Preface. J. Comput. Sci. Technol. 25(1): 1-2 (2009) - [j48]Ying Xu:
Computational Challenges in Deciphering Genomic Structures of Bacteria. J. Comput. Sci. Technol. 25(1): 53-70 (2009) - [j47]Fenglou Mao, PhuongAn Dam, Jacky Chou, Victor Olman, Ying Xu:
DOOR: a database for prokaryotic operons. Nucleic Acids Res. 37(Database-Issue): 459-463 (2009) - [j46]Guojun Li, Xiaotie Deng
, Ying Xu:
A polynomial-time approximation scheme for embedding hypergraph in a cycle. ACM Trans. Algorithms 5(2): 20:1-20:12 (2009) - [j45]Victor Olman, Fenglou Mao, Hongwei Wu, Ying Xu:
Parallel Clustering Algorithm for Large Data Sets with Applications in Bioinformatics. IEEE ACM Trans. Comput. Biol. Bioinform. 6(2): 344-352 (2009) - [c42]Mi-Chia Ma, Hsiao-Fang Lin, Ying Xu:
Detect the Different Isoforms Using GeneChip Human Exon 1.0 ST Arrays. BMEI 2009: 1-5 - 2008
- [j44]Guojun Li, Zhijie Liu, Jun-tao Guo, Ying Xu:
An Algorithm for Simultaneous Backbone Threading and Side-Chain Packing. Algorithmica 51(4): 435-450 (2008) - [j43]Juan Cui, Qi Liu, David Puett, Ying Xu:
Computational prediction of human proteins that can be secreted into the bloodstream. Bioinform. 24(20): 2370-2375 (2008) - [j42]Fengfeng Zhou
, Victor Olman, Ying Xu:
Barcodes for genomes and applications. BMC Bioinform. 9 (2008) - [j41]Hongwei Wu, Fenglou Mao, Victor Olman, Ying Xu:
On application of directons to functional classification of genes in prokaryotes. Comput. Biol. Chem. 32(3): 176-184 (2008) - [j40]Kyle Ellrott
, Jun-tao Guo, Victor Olman, Ying Xu:
Improving the Performance of protein Threading Using Insertion/Deletion Frequency Arrays. J. Bioinform. Comput. Biol. 6(3): 585-602 (2008) - [j39]Qi Liu, Victor Olman, Huiqing Liu, Xiuzi Ye, Shilun Qiu, Ying Xu:
RNACluster: An integrated tool for RNA secondary structure comparison and clustering. J. Comput. Chem. 29(9): 1517-1526 (2008) - [c41]Dongsheng Che, Guojun Li, Shane T. Jensen, Jun S. Liu, Ying Xu:
PFP: A Computational Framework for Phylogenetic Footprinting in Prokaryotic Genomes. ISBRA 2008: 110-121 - 2007
- [j38]Guojun Li, Zhijie Liu, Jun-tao Guo, Ying Xu:
An Algorithm for Simultaneous Backbone Threading and Side-Chain Packing. Algorithmica 48(4): 329-342 (2007) - [j37]Guojun Li, Jizhu Lu, Victor Olman, Ying Xu:
Prediction of cis-Regulatory Elements: from High-Information Content Analysis to Motif Identification. J. Bioinform. Comput. Biol. 5(4): 817-838 (2007) - [c40]Dongsheng Che, Jizhen Zhao, Liming Cai, Ying Xu:
Operon Prediction in Microbial Genomes Using Decision Tree Approach. CIBCB 2007: 135-142 - [c39]Hongwei Wu, Fenglou Mao, Victor Olman, Ying Xu:
An Algorithm for Hierarchical Classification of Genes of Prokaryotic Genomes. ISBRA 2007: 551-563 - 2006
- [j36]Fengfeng Zhou
, Yu Xue
, Xuebiao Yao
, Ying Xu:
CSS-Palm: palmitoylation site prediction with a clustering and scoring strategy (CSS). Bioinform. 22(7): 894-896 (2006) - [j35]Victor Olman, Chindo Hicks, Peng Wang, Ying Xu:
Gene Expression Data Analysis in Subtypes of Ovarian Cancer Using Covariance Analysis. J. Bioinform. Comput. Biol. 4(5): 999-1014 (2006) - [j34]Yu Xue
, Fengfeng Zhou
, Chuanhai Fu
, Ying Xu, Xuebiao Yao
:
SUMOsp: a web server for sumoylation site prediction. Nucleic Acids Res. 34(Web-Server-Issue): 254-257 (2006) - [j33]Fenglou Mao, Zhengchang Su, Victor Olman, PhuongAn Dam, Zhijie Liu, Ying Xu:
Mapping of orthologous genes in the context of biological pathways: An application of integer programming. Proc. Natl. Acad. Sci. USA 103(1): 129-134 (2006) - [j32]Yinglei Song, Chunmei Liu, Xiuzhen Huang, Russell L. Malmberg
, Ying Xu, Liming Cai:
Efficient Parameterized Algorithms for Biopolymer Structure-Sequence Alignment. IEEE ACM Trans. Comput. Biol. Bioinform. 3(4): 423-432 (2006) - [c38]Zhengchang Su, Fenglou Mao, Hongwei Wu, PhuongAn Dam, Xin Chen, Tao Jiang, Victor Olman, Brian Palenik
, Ying Xu:
Understanding microbial genomic structures and applications to biological pathway inference. GrC 2006: 23-24 - [c37]Robin Kramer, Victor Olman, Ying Xu, Dong Xu:
DigitalTree: A Tool for Displaying Biological Data in Tree Structure. International Conference on Computational Science (2) 2006: 855-862 - [c36]Chunmei Liu, Bo Yan, Yinglei Song, Ying Xu, Liming Cai:
Peptide sequence tag-based blind identification of post-translational modifications with point process model. ISMB (Supplement of Bioinformatics) 2006: 307-313 - [c35]Chunmei Liu, Yinglei Song, Bo Yan, Ying Xu, Liming Cai:
Fast De novo Peptide Sequencing and Spectral Alignment via Tree Decomposition. Pacific Symposium on Biocomputing 2006: 255-266 - [c34]Bo Yan, G. Tong Zhou, Peng Wang, Zhijie Liu, Vincent A. Emanuele II, Victor Olman, Ying Xu:
A Point-Process Model for Rapid Identification of Post-Translational Modifications. Pacific Symposium on Biocomputing 2006: 327-338 - 2005
- [j31]Bo Yan, Chongle Pan
, Victor Olman, Robert L. Hettich
, Ying Xu:
A graph-theoretic approach for the separation of b and y ions in tandem mass spectra. Bioinform. 21(5): 563-574 (2005) - [j30]Guojun Li, Ying Xu, Chuanping Chen, Zhenhong Liu:
On Connected [g, f +1]-Factors in Graphs. Comb. 25(4): 393-405 (2005) - [j29]Tema Fridman, Jane Razumovskaya, Nathan Verberkmoes, Gregory B. Hurst
, Vladimir Protopopescu, Ying Xu:
The Probability Distribution for a Random Match between an Experimental-theoretical Spectral Pair in Tandem Mass Spectrometry. J. Bioinform. Comput. Biol. 3(2): 455-476 (2005) - [j28]Zhi-Zhong Chen, Guohui Lin, Romeo Rizzi
, Jianjun Wen, Dong Xu, Ying Xu, Tao Jiang
:
More Reliable Protein NMR Peak Assignment via Improved 2-Interval Scheduling. J. Comput. Biol. 12(2): 129-146 (2005) - [j27]Ying Xu, Liming Cai, Zhiping Weng:
Preface. J. Comput. Sci. Technol. 20(4): 433 (2005) - [j26]Bo Yan, Youxing Qu, Fenglou Mao, Victor Olman, Ying Xu:
PRIME: A Mass Spectrum Data Mining Tool for De Nova Sequencing and PTMs Identification. J. Comput. Sci. Technol. 20(4): 483-490 (2005) - [c33]Guojun Li, Jizhu Lu, Victor Olman, Ying Xu:
PROMOCO: a New Program for Prediction of cis Regulatory Elements: From High-Information Content Analysis to Clique Identification. CSB Workshops 2005: 35-36 - [c32]PhuongAn Dam, Victor Olman, Ying Xu:
Improving Operon Prediction in E. coli. CSB Workshops 2005: 69-70 - [c31]Hongwei Wu, Fenglou Mao, Victor Olman, Ying Xu:
Accurate Prediction of Orthologous Gene Groups in Microbes. CSB 2005: 73-79 - [c30]Peng Wang, Bo Yan, Jun-tao Guo, Chindo Hicks, Ying Xu:
Structural genomics analysis of alternative splicing and its application in modeling structures of alternatively spliced variants. CSB Workshops 2005: 217- - [c29]Yinglei Song, Chunmei Liu, Xiuzhen Huang, Russell L. Malmberg, Ying Xu, Liming Cai:
Efficient Parameterized Algorithm for Biopolymer Structure-Sequence Alignment. WABI 2005: 376-388 - [p1]PhuongAn Dam, Zhengchang Su, Victor Olman, Ying Xu:
Computational Reconstruction of the carbon fixation pathway in Synechococcus SP. Wh 8102. Advances in Bioinformatics and Its Applications 2005 - 2004
- [j25]Jinbo Xu, Ming Li, Ying Xu:
Protein Threading by Linear Programming: Theoretical Analysis and Computational Results. J. Comb. Optim. 8(4): 403-418 (2004) - [j24]Jun-tao Guo, Kyle Ellrott
, Won Jae Chung, Dong Xu, Sergei Passovets, Ying Xu:
PROSPECT-PSPP: an automatic computational pipeline for protein structure prediction. Nucleic Acids Res. 32(Web-Server-Issue): 522-525 (2004) - [c28]Zhengchang Su, PhuongAn Dam, Victor Olman, Ying Xu:
Computational Inference of Transcription Regulation and Response Networks in Synechococcus sp. WH8102. BIBE 2004: 5-8 - [c27]Bo Yan, Chongle Pan, Victor Olman, Robert L. Hettich, Ying Xu:
Separation of Ion Types in Tandem Mass Spectrometry Data Interpretation - A Graph-Theoretic Approach. CSB 2004: 236-244 - [c26]Victor Olman, Hanchuan Peng, Zhengchang Su, Ying Xu:
Mapping of Microbial Pathways through Constrained Mapping of Orthologous Genes. CSB 2004: 363-370 - [c25]Peng Wang, Zhengchang Su, PhuongAn Dam, Ying Xu:
A Knowledge Base for Computational Pathway Reconstruction. CSB 2004: 612-613 - [c24]PhuongAn Dam, Zhengchang Su, Victor Olman, Ying Xu:
In Silico Construction of the Carbon Fixation Pathway in Synechococcus sp. WH8102. CSB 2004: 614-615 - [c23]Zhengchang Su, PhuongAn Dam, X. Chen, Victor Olman, Tao Jiang, Ying Xu:
Computational Construction of Nitrogen Assimilation Pathway in Cyanobacteria Synechococcus sp. WH8102. CSB 2004: 640-641 - [c22]Fenglou Mao, Zhengchang Su, Victor Olman, David Chuang, Ying Xu:
Pathway Mapping with Operon Information: An Integer-Programming Method. CSB 2004: 642-643 - [c21]Victor Olman, Jizhu Lu, PhuongAn Dam, Zhengchang Su, Ying Xu:
CUBIC: Search for Binding Sites. CSB 2004: 666-667 - [c20]Peng Wang, Zhengchang Su, Jun-tao Guo, Ying Xu:
Structural Analysis of FGFR1 Kinase Activation through Molecular Dynamics Simulation. CSB 2004: 700-701 - [c19]Jun-tao Guo, Ying Xu:
Molecular Modeling of Full-Length OxyR from Shewanella oneidensis MR-1 and Molecular Dynamics Studies of the Activation Domain. CSB 2004: 708-709 - [c18]Youxing Qu, Jun-tao Guo, Victor Olman, Ying Xu:
Protein Fold Recognition Through Application of Residual Dipolar Coupling Data. Pacific Symposium on Biocomputing 2004: 459-470 - 2003
- [j23]Manesh J. Shah, Sergei Passovets, Dongsup Kim, Kyle Ellrott
, Li Wang, Inna Vokler, Philip F. LoCascio, Dong Xu, Ying Xu:
A computational pipeline for protein structure prediction and analysis at genome scale. Bioinform. 19(15): 1985-1996 (2003) - [j22]Huandong Sun, Ming Li, Ying Xu:
MOLVIE: an interactive visualization environment for molecular structures. Comput. Methods Programs Biomed. 71(1): 85-90 (2003) - [j21]Victor Olman, Dong Xu, Ying Xu:
Cubic: Identification of Regulatory Binding Sites through Data Clustering. J. Bioinform. Comput. Biol. 1(1): 21-40 (2003) - [j20]Jinbo Xu, Ming Li, Dongsup Kim, Ying Xu:
Raptor: Optimal Protein Threading by Linear Programming. J. Bioinform. Comput. Biol. 1(1): 95-118 (2003) - [j19]Guohui Lin, Dong Xu, Zhi-Zhong Chen, Tao Jiang
, Jianjun Wen, Ying Xu:
Computational Assignment of Protein Backbone Nmr Peaks Byefficient Bounding and Filtering. J. Bioinform. Comput. Biol. 1(2): 387-410 (2003) - [j18]Zhi-Zhong Chen, Tao Jiang
, Guo-Hui Lin, Jianjun Wen, Dong Xu, Jinbo Xu, Ying Xu:
Approximation algorithms for NMR spectral peak assignment. Theor. Comput. Sci. 299(1-3): 211-229 (2003) - [c17]Manesh J. Shah, Sergei Passovets, Dongsup Kim, Kyle Ellrott
, Li Wang, Inna Vokler, Philip F. LoCascio, Dong Xu, Ying Xu:
A Computational Pipeline for Protein Structure Prediction and Analysis at Genome Scale. BIBE 2003: 3-10 - [c16]Yu Chen, Trupti Joshi, Ying Xu, Dong Xu:
Towards Automated Derivation of Biological Pathways Using High-Throughput Biological Data. BIBE 2003: 18-25 - [c15]Jane Razumovskaya, Victor Olman, Dong Xu, Edward C. Uberbacher, Nathan Verberkmoes, Ying Xu:
A Computational Method for Assessing Peptide-Identification Reliability in Tandem Mass Spectrometry Analysis with SEQUEST. CSB 2003: 421-423 - [c14]Victor Olman, Dong Xu, Ying Xu:
CUBIC: Identification of Regulatory Binding Sites Through Data Clustering. CSB 2003: 448-449 - [c13]Zhengchang Su, PhuongAn Dam, Xin Chen, Victor Olman, Tao Jiang, Brian Palenik, Ying Xu:
Computational Inference of Regulatory Pathways in Microbes. CSB 2003: 631-633 - [c12]Zhi-Zhong Chen, Tao Jiang, Guohui Lin, Romeo Rizzi, Jianjun Wen, Dong Xu, Ying Xu:
More Reliable Protein NMR Peak Assignment via Improved 2-Interval Scheduling. ESA 2003: 580-592 - [c11]Jinbo Xu, Ming Li, Guo-Hui Lin, Dongsup Kim, Ying Xu:
Protein Threading by Linear Programming. Pacific Symposium on Biocomputing 2003: 264-275 - [c10]Victor Olman, Dong Xu, Ying Xu:
Identification of Regulatory Binding Sites Using Minimum Spanning Trees. Pacific Symposium on Biocomputing 2003: 327-338 - 2002
- [j17]Ying Xu, Victor Olman, Dong Xu:
Clustering gene expression data using a graph-theoretic approach: an application of minimum spanning trees. Bioinform. 18(4): 536-545 (2002) - [j16]Dong Xu, Guangshan Li, Liyou Wu, Jizhong Zhou
, Ying Xu:
PRIMEGENS: robust and efficient design of gene-specific probes for microarray analysis. Bioinform. 18(11): 1432-1437 (2002) - [j15]Ying Xu, Dong Xu, Dongsup Kim, Victor Olman, Jane Razumovskaya, Tao Jiang
:
Automated assignment of backbone NMR peaks using constrained bipartite matching. Comput. Sci. Eng. 4(1): 50-62 (2002) - [c9]Guo-Hui Lin, Dong Xu, Zhi-Zhong Chen, Tao Jiang
, Jianjun Wen, Ying Xu:
An Efficient Branch-and-Bound Algorithm for the Assignment of Protein Backbone NMR Peaks. CSB 2002: 165-174 - [c8]Zhi-Zhong Chen, Tao Jiang
, Guo-Hui Lin, Jianjun Wen, Dong Xu, Ying Xu:
Improved Approximation Algorithms for NMR Spectral Peak Assignment. WABI 2002: 82-96 - 2000
- [j14]Dong Xu, Michael A. Unseren, Ying Xu, Edward C. Uberbacher:
Sequence-structure specificity of a knowledge based energy function at the secondary structure level. Bioinform. 16(3): 269-285 (2000) - [j13]Ying Xu, Dong Xu, Harold N. Gabow:
Protein domain decomposition using a graph-theoretic approach. Bioinform. 16(12): 1091-1104 (2000) - [j12]Ying Xu, Dong Xu, Oakley H. Crawford, J. Ralph Einstein:
A Computational Method for NMR-Constrained Protein Threading. J. Comput. Biol. 7(3-4): 449-467 (2000) - [c7]Ying Xu, Dong Xu, Oakley H. Crawford, J. Ralph Einstein, Engin Serpersu
:
Protein structure determination using protein threading and sparse NMR data (extended abstract). RECOMB 2000: 299-307
1990 – 1999
- 1998
- [j11]Ying Xu, Dong Xu, Edward C. Uberbacher:
An Efficient Computational Method for Globally Optimal Threading. J. Comput. Biol. 5(3): 597-614 (1998) - [j10]Ying Xu, Victor Olman, Edward C. Uberbacher:
A segmentation algorithm for noisy images: Design and evaluation. Pattern Recognit. Lett. 19(13): 1213-1224 (1998) - [c6]Ying Xu, Dong Xu, Edward C. Uberbacher:
A new method for modeling and solving the protein fold recognition problem (extended abstract). RECOMB 1998: 285-292 - 1997
- [j9]Ying Xu, Edward C. Uberbacher:
2D image segmentation using minimum spanning trees. Image Vis. Comput. 15(1): 47-57 (1997) - [j8]Ying Xu, Edward C. Uberbacher:
Automated Gene Identification in Large-Scale Genomic Sequences. J. Comput. Biol. 4(3): 325-338 (1997) - [c5]Ying Xu, Richard J. Mural, Edward C. Uberbacher:
Inferring Gene Structures in Genomic Sequences Using Pattern Recognition and Expressed Sequence Tags. ISMB 1997: 344-353 - [c4]Ying Xu, Edward C. Uberbacher:
Reference-based gene model prediction on DNA contigs (extended abstract). RECOMB 1997: 330-336 - 1996
- [j7]Ying Xu, Edward C. Uberbacher:
A polynomial-time algorithm for a class of protein threading problems. Comput. Appl. Biosci. 12(6): 511-517 (1996) - [j6]Sherri Matis, Ying Xu, Manesh J. Shah, Xiaojun Guan, J. Ralph Einstein, Richard J. Mural, Edward C. Uberbacher:
Detection of RNA Polymerase II Promoters and Polyadenylation Sites in Human DNA Sequence. Comput. Chem. 20(1): 135-140 (1996) - [j5]Ying Xu, Richard J. Mural, Edward C. Uberbacher:
An Iterative Algorithm for Correcting Sequencing Errors in DNA Coding Regions. J. Comput. Biol. 3(3): 333-344 (1996) - [j4]Harold N. Gabow, Ying Xu:
Efficient Theoretic and Practical Algorithms for Linear Matroid Intersection Problems. J. Comput. Syst. Sci. 53(1): 129-147 (1996) - [j3]Ying Xu, Richard J. Mural, J. Ralph Einstein, Manesh B. Shah, Edward C. Uberbacher:
GRAIL: a multi-agent neural network system for gene identification. Proc. IEEE 84(10): 1544-1552 (1996) - [c3]Ying Xu, Edward C. Uberbacher:
Gene Prediction by Pattern Recognition and Homology Search. ISMB 1996: 241-251 - 1995
- [j2]Ying Xu, Richard J. Mural, Edward C. Uberbacher:
Correcting sequencing errors in DNA coding regions using a dynamic programming approach. Comput. Appl. Biosci. 11(2): 117-124 (1995) - 1994
- [j1]Ying Xu, Richard J. Mural, Edward C. Uberbacher:
Constructing gene models from accurately predicted exons: an application of dynamic programming. Comput. Appl. Biosci. 10(6): 613-623 (1994) - [c2]Ying Xu, Harold N. Gabow:
Fast Algorithms for Transversal Matroid Intersection Problems. ISAAC 1994: 625-633
1980 – 1989
- 1989
- [c1]Harold N. Gabow, Ying Xu:
Efficient Algorithms for Independent Assignments on Graphic and Linear Matroids. FOCS 1989: 106-111
Coauthor Index

manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from ,
, and
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and
to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from .
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2025-04-08 01:12 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint