default search action
Google
Google Scholar
Semantic Scholar
Internet Archive Scholar
CiteSeerX
ORCID4. CSB 2005: Stanford, CA, USA
- Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference, CSB 2005, Stanford, CA, USA, August 8-11, 2005. IEEE Computer Society 2005, ISBN 0-7695-2344-7
Introduction
- Preface.
- Committees.
- Referees.
Keynote Address
- Russ B. Altman:
Challenges in Creating an Infrastructure for Physics-Based Simulation of Biological Structures. 3
Invited Talks
- Michael Ashburner:
Ontologies for Biologists - A Community Model for the Annotation of Genomic Data. 7 - Ron Kikinis:
The National Alliance for Medical Imaging Computing (NA-MIC). 8 - Arthur W. Toga:
The Center for Computational Biology. 9
Genomics
- Zheng Yun, Kwoh Chee Keong:
Identifying Simple Discriminatory Gene Vectors with an Information Theory Approach. 13-24 - Xutao Deng, Huimin Geng, Hesham H. Ali:
Learning Yeast Gene Functions from Heterogeneous Sources of Data Using Hybrid Weighted Bayesian Networks. 25-34 - Benjamin G. Jackson, Srinivas Aluru, Patrick S. Schnable
:
Consensus Genetic Maps: A Graph Theoretic Approach. 35-43 - Sun Kim, Jeong-Hyeon Choi, Jiong Yang:
Gene Teams with Relaxed Proximity Constraint. 44-55 - Anantharaman Kalyanaraman, Srinivas Aluru:
Efficient Algorithms and Software for Detection of Full-Length LTR Retrotransposons. 56-64 - Roded Sharan, Bjarni V. Halldórsson, Sorin Istrail:
Islands of Tractability for Parsimony Haplotyping. 65-72 - Hongwei Wu, Fenglou Mao, Victor Olman, Ying Xu:
Accurate Prediction of Orthologous Gene Groups in Microbes. 73-79 - Vered Kunik, Zach Solan, Shimon Edelman, Eytan Ruppin, David Horn:
Motif Extraction and Protein Classification. 80-85 - Yuji Kawada, Yasubumi Sakakibara:
Discriminative Discovery of Transcription Factor Binding Sites from Location Data. 86-89
Phylogeny and Evolution
- Luay Nakhleh, Guohua Jin, Fengmei Zhao, John M. Mellor-Crummey:
Reconstructing Phylogenetic Networks Using Maximum Parsimony. 93-102 - Ravi Vijaya Satya, Amar Mukherjee:
An Efficient Algorithm for Perfect Phylogeny Haplotyping. 103-110 - Aswath Manohar, Serafim Batzoglou:
TreeRefiner: A Tool for Refining a Multiple Alignment on a Phylogenetic Tree. 111-119
Transcriptomes
- Sun-Yuan Kung, Man-Wai Mak, Ilias Tagkopoulos:
Multi-Metric and Multi-Substructure Biclustering Analysis for Gene Expression Data. 123-134 - Anya Tsalenko, Roded Sharan, Hege Edvardsen, Vessela N. Kristensen, Anne-Lise Børresen-Dale, Amir Ben-Dor, Zohar Yakhini:
Analysis of SNP-Expression Association Matrices. 135-143 - Will Sheffler, Eli Upfal, John Sedivy, William Stafford Noble:
A Learned Comparative Expression Measure for Affymetrix GeneChip DNA Microarrays. 144-154
Proteomics
- Dekel Tsur, Stephen Tanner, Ebrahim Zandi, Vineet Bafna, Pavel A. Pevzner:
Identification of Post-Translational Modifications via Blind Search of Mass-Spectra. 157-166 - Changyu Shen, Lang Li, Jake Yue Chen:
Discover True Association Rates in Multi-protein Complex Proteomics Data Sets. 167-174 - Aaron A. Klammer, Christine C. Wu, Michael J. MacCoss, William Stafford Noble:
Peptide Charge State Determination for Low-Resolution Tandem Mass Spectra. 175-185
Structural Bioinformatics
- Lincong Wang, Bruce Randall Donald:
An Efficient and Accurate Algorithm for Assigning Nuclear Overhauser Effect Restraints Using a Rotamer Library Ensemble and Residual Dipolar Couplings. 189-202 - Zhong Chen, Ying Xu:
Multi-Scale Hierarchical Structure Prediction of Helical Transmembrane Proteins. 203-207 - Peter M. Kasson, Mark M. Davis, Axel T. Brünger:
Deformable Modeling for Improved Calculation of Molecular Velocities from Single-Particle Tracking. 208-211 - Feng Gao, Mohammed Javeed Zaki:
PSIST: Indexing Protein Structures Using Suffix Trees. 212-222 - Yinglei Song, Chunmei Liu, Russell L. Malmberg, Fangfang Pan, Liming Cai:
Tree Decomposition Based Fast Search of RNA Structures Including Pseudoknots in Genomes. 223-234 - Lincong Wang, Ramgopal R. Mettu, Bruce Randall Donald:
An Algebraic Geometry Approach to Protein Structure Determination from NMR Data. 235-246 - Jinbo Xu, Feng Jiao, Bonnie Berger:
A Tree-Decomposition Approach to Protein Structure Prediction. 247-256
Pathways and Networks
- R. Nigam, S. Liang:
A Pivoting Algorithm for Metabolic Networks in the Presence of Thermodynamic Constraints. 259-267 - Pengjun Pei, Aidong Zhang:
A Topological Measurement for Weighted Protein Interaction Network. 268-278 - Tarek S. Najdi, Chin-Rang Yang, Bruce E. Shapiro, G. Wesley Hatfield, Eric Mjolsness:
Application of a Generalized MWC Model for the Mathematical Simulation of Metabolic Pathways Regulated by Allosteric Enzymes. 279-288 - Ryo Yoshida, Seiya Imoto, Tomoyuki Higuchi:
Estimating Time-Dependent Gene Networks from Time Series Microarray Data by Dynamic Linear Models with Markov Switching. 289-298
Applied Bioinformatic
- Tu Minh Phuong, Zhen Lin, Russ B. Altman:
Choosing SNPs Using Feature Selection. 301-309 - Haifeng Li, Keshu Zhang, Tao Jiang:
Robust and Accurate Cancer Classification with Gene Expression Profiling. 310-321 - Gabriela Alexe, Gyan Bhanot, Babu Venkataraghavan, Ramakrishna Ramaswamy, Jorge Lepre, Arnold J. Levine, Gustavo Stolovitzky:
A Robust Meta-classification Strategy for Cancer Diagnosis from Gene Expression Data. 322-325
Data Mining and Ontology
- Chengyong Yang, Erliang Zeng, Tao Li, Giri Narasimhan:
Clustering Genes Using Gene Expression and Text Literature Data. 329-340 - Susan L. Havre, Bobbie-Jo M. Webb-Robertson, Anuj R. Shah, Christian Posse, Banu Gopalan, Fred J. Brockman:
Bioinformatic Insights from Metagenomics through Visualization. 341-350 - Rui Mao, Weijia Xu, Smriti R. Ramakrishnan, Glen Nuckolls, Daniel P. Miranker:
On Optimizing Distance-Based Similarity Search for Biological Databases. 351-361 - Mohammed I. Rafiq, Martin J. O'Connor, Amar K. Das:
Computational Method for Temporal Pattern Discovery in Biomedical Genomic Databases. 362-365 - Nalini Polavarapu, Shamkant B. Navathe, Ramprasad Ramnarayanan, Abrar ul Haque, Saurav Sahay, Ying Liu:
Investigation into Biomedical Literature Classification Using Support Vector Machines. 366-374
Miscellaneous
- Tobias P. Mann, Richard Humbert, John A. Stamatoyannopoulos, William Stafford Noble:
Automated Validation of Polymerase Chain Reactions Using Amplicon Melting Curves. 377-385
Workshop Abstracts
- Controlling Complexity.
- BioImage Data Mining and Informatics.
- BioSPICE and Use Cases.
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
last updated on 2025-02-05 20:38 CET by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by:
