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ORCIDJournal of Computational Biology, Volume 5
Volume 5, Number 1, Spring 1998
- Leonid Kruglyak, Eric S. Lander:
Faster Multipoint Linkage Analysis Using Fourier Transforms. 1-7 - S. Rao Kosaraju, Alejandro A. Schäffer, Leslie G. Biesecker:
Approximation Algorithms for a Genetic Diagnostics Problem. 9-26 - Bonnie Berger, Frank Thomson Leighton:
Protein Folding in the Hydrophobic-Hydrophilic(HP) Model is NP-Complete. 27-40 - V. Escalier, Joël Pothier
, Henry Soldano, Alain Viari:
Pairwide and Multiple Identification of Three-Dimensional Common Substructures in Proteins. 41-56 - I. Saira Mian, M. J. Moser, W. R. Holley, A. Chatterjee:
Statistical Modelling and phylogenetic Analysis of a Deaminase Domain. 57-72 - Daniel E. Bentil:
Modelling and Simulation of Motility in Actomyosin Systems. 73-86 - Gary Benson, X. Su:
On the Distribution of K-tuple Matches for Sequence Homology: A Constant Time Exact Calculation of the Variance. 87-100 - Andrew F. Siegel, Jared C. Roach, G. Van Den Engh:
Expectation and Variance of True and False Fragment Matches in DNA Restriction Mapping. 101-111 - Andrew F. Siegel, Jared C. Roach, C. Magness, Edward C. Thayer, G. Van Den Engh:
Optimization of Restriction Fragment DNA Mapping. 113-126 - Lusheng Wang, Dan Gusfield:
Constructing Additive Trees When the Error Is Small. 127-133 - Oliver Eulenstein, Boris G. Mirkin, Martin Vingron:
Duplication-Based Measures of Difference Between Gene and Species Trees. 135-148 - Arndt von Haeseler, M. Schoniger:
Evolution of DNA or Amino Acid Sequences with Dependent Sites. 149-163 - Semyon Kruglyak:
Multistage Sequencing by Hybridization. 165-171
Volume 5, Number 2, Spring 1998
- Alberto Apostolico, Raffaele Giancarlo:
Seqeunce Alignment in Molecular Biology. 173-196 - Zheng Zhang, Piotr Berman, Webb Miller:
Alignments without Low-Scoring Regions. 197-210 - Timothy L. Bailey, Michael Gribskov:
Methods and Statistics for Combining Motif Match Scores. 211-221 - Gesine Reinert, Sophie Schbath:
Compound Poisson and Poisson Process Approximations for Occurrences of Multiple Words in Markov Chains. 223-253 - Lloyd M. Smith, Robert M. Corn, Anne Condon, Max G. Lagally, Tony Frutos, Qinghua Liu, Andrew Thiel:
A Surface-Based Approach to DNA Computation. 255-267 - Qinghua Liu, Tony Frutos, Andrew Thiel, Robert M. Corn, Lloyd M. Smith:
DNA Computing on Surfaces: Encoding Information at the Single Base Level. 269-278 - Alvis Brazma, Inge Jonassen, Ingvar Eidhammer, David R. Gilbert:
Approaches to the Automatic Discovery of Patterns in Biosequences. 279-305 - M. T. Laub, D. W. Smith:
Finding Intron/Exon Splice Junctions Using INFO, Interruption Finder and Organizer. 307-321 - S. Browning:
Relationship Information Contained in Gamete Identiti by Descent Data. 323-334 - T. M. Przytycha:
Transforming Rooted Agreement into Unrooted Agreement. 335-349 - N. Benahabiles, X. Gallet, A. Thomas-Soumarmon, R. Brasseur:
A Descriptive Analysis of Populations of Three-Dimemsional Structures Calculated from Primary Sequences of Proteins by Osiris. 351-366
Volume 5, Number 3, Fall 1998
- Azat Ya. Badretdinov, Alexei V. Finkelstein:
How Homologs Can Help to Predict Protein Folds Even Though They Cannot Be Predicted for Individual Sequences. 369-376 - Amir Ben-Dor, Benny Chor, Dan Graur, Ron Ophir, Dan Pelleg:
Constructing Phylogenies from Quartets: Elucidation of Eutherian Superordinal Relationships. 377-390 - Maria Luisa Bonet, Mike A. Steel, Tandy J. Warnow, Shibu Yooseph:
Better Methods for Solving Parsimony and Compatibility. 391-407 - Cheng Che Chen, Jaswinder Pal Singh, Russ B. Altman:
Hierarchical Organization of Molecular Structure Computations. 409-422 - Pierluigi Crescenzi, Deborah Goldman, Christos H. Papadimitriou, Antonio Piccolboni, Mihalis Yannakakis:
On the Complexity of Protein Folding. 423-465 - Israel M. Gelfand, Alexander Kister, Casimir A. Kulikowski, Ognyan Stoyanov:
Algorithmic Determination of Core Positions in the VL and VH Domains of Immunoglobulin Molecules. 467-477 - William Noble Grundy:
Homology Detection via Family Pairwise Search. 479-491 - Ian Holmes, Richard Durbin:
Dynamic Programming Alignment Accuracy. 493-504 - Jae Kyu Lee, Vlado Dancík, Michael S. Waterman:
Estimation for Restriction Sites Observed by Optical Mapping Using Reversible-Jump Markov Chain Monte Carlo. 505-515 - Hans-Peter Lenhof, Knut Reinert, Martin Vingron:
A Polyhedral Approach to RNA Sequence Structure Alignment. 517-530 - Boris A. Reva, Dmitrii S. Rykunov, Alexei V. Finkelstein, Jeffrey Skolnick:
Optimization of Protein Structure on Lattices Using a Self-Consistent Field Approach. 531-538 - Marie-France Sagot, Eugene W. Myers:
Identifying Satellites and Periodic Repetitions in Biological Sequences. 539-553 - David Sankoff, Mathieu Blanchette:
Multiple Genome Rearrangement and Breakpoint Phylogeny. 555-570 - Wynn L. Walker, David S. Goodsell, Elliot M. Landaw:
An Analysis of a Class of DNA Sequence Reading Molecules. 571-583 - Thomas D. Wu, Scott C. Schmidler, Trevor Hastie, Douglas L. Brutlag:
Regression Analysis of Multiple Protein Structures. 585-595 - Ying Xu, Dong Xu, Edward C. Uberbacher:
An Efficient Computational Method for Globally Optimal Threading. 597-614
Volume 5, Number 4, Winter 1998
- Sam T. Roweis, Erik Winfree, Richard Burgoyne, Nickolas V. Chelyapov, Myron F. Goodman, Paul W. K. Rothemund, Leonard M. Adleman:
A Sticker-Based Model for DNA Computation. 615-629 - Bilha Sandak, Ruth Nussinov, Haim J. Wolfson:
A Method for Biomolecular Structural Recognition and Docking Allowing Conformational Flexibility. 631-654 - Wing Hung Wong, Yan Cui, Run Sheng Chen:
Torsional Relaxation for Biopolymers. 655-665 - Steven Salzberg, Arthur L. Delcher, Kenneth H. Fasman, John C. Henderson:
A Decision Tree System for Finding Genes in DNA. 667-680 - Roderic Guigó:
Assembling Genes from Predicted Exons In Linear Time with Dynamic Programming. 681-702 - R. R. Mallios:
Iterative Stepwise Discriminant Analysis: A Meta-Algorithm for Detecting Quantitative Sequence Motifs. 703-711 - Steven N. Evans, Xiaowen Zhou:
Constructing and Counting Phylogenetic Invariants. 713-724 - Laxmi Parida:
A Uniform Framework for Ordered Restriction Map Problems. 725-739 - Nicholas Q. Trân:
An Easy Case of Sorting by Reversals. 741-746 - Takako Takai-Igarashi, Yoko Nadaoka, Tsuguchika Kaminuma:
A Database for Cell Signaling Networks. 747-754
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