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ORCIDDavid Bryant
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Journal Articles
- 2023
[j25]David Bryant
, Katharina T. Huber, Vincent Moulton, Paul F. Tupper:
Diversities and the Generalized Circumradius. Discret. Comput. Geom. 70(4): 1862-1883 (2023)- [j24]David Bryant, Daniel H. Huson:
NeighborNet: improved algorithms and implementation. Frontiers Bioinform. 3 (2023) - 2021
- [j23]Marnus Stoltz, Gene Stoltz, Kazushige Obara, Ting Wang, David Bryant:
Acceleration of hidden Markov model fitting using graphical processing units, with application to low-frequency tremor classification. Comput. Geosci. 156: 104902 (2021) - [j22]David Bryant, André Nies, Paul F. Tupper:
FraïSSé Limits for Relational Metric Structures. J. Symb. Log. 86(3): 913-934 (2021) - [j21]Zhanglong Cao, David Bryant, Timothy C. A. Molteno, Colin Fox, Matthew Parry:
V-Spline: An Adaptive Smoothing Spline for Trajectory Reconstruction. Sensors 21(9): 3215 (2021) - 2019
- [j20]David Bryant, Céline Scornavacca:
An O(n log n) Time Algorithm for Computing the Path-Length Distance Between Trees. Algorithmica 81(9): 3692-3706 (2019) - 2017
- [j19]Monika Balvociute, David Bryant, Andreas Spillner:
When Can Splits be Drawn in the Plane? SIAM J. Discret. Math. 31(2): 839-856 (2017) - 2015
- [j18]Chuan Ku, Shijulal Nelson-Sathi, Mayo Roettger, Filipa L. Sousa, Peter J. Lockhart, David Bryant, Einat Hazkani-Covo, James O. McInerney, Giddy Landan, William F. Martin:
Endosymbiotic origin and differential loss of eukaryotic genes. Nat. 524(7566): 427-432 (2015) - 2014
- [j17]David Bryant, Paul F. Tupper:
Diversities and the Geometry of Hypergraphs. Discret. Math. Theor. Comput. Sci. 16(2): 1-20 (2014) - [j16]Céline Scornavacca, Leo van Iersel, Steven Kelk, David Bryant:
The agreement problem for unrooted phylogenetic trees is FPT. J. Graph Algorithms Appl. 18(3): 385-392 (2014) - 2012
- [j15]David Bryant, Mike A. Steel:
'Bureaucratic' set systems, and their role in phylogenetics. Appl. Math. Lett. 25(8): 1148-1152 (2012) - 2009
- [j14]David Bryant, Mike A. Steel:
Computing the Distribution of a Tree Metric. IEEE ACM Trans. Comput. Biol. Bioinform. 6(3): 420-426 (2009) - 2007
- [j13]David Bryant, Vincent Moulton, Andreas Spillner:
Consistency of the Neighbor-Net Algorithm. Algorithms Mol. Biol. 2 (2007) - [j12]David Bryant, Andreas W. M. Dress:
Linearly independent split systems. Eur. J. Comb. 28(6): 1814-1831 (2007) - [j11]Da Wei Huang, Brad T. Sherman, Qina Tan, Joseph Kir, David Liu, David Bryant, Yongjian Guo, Robert M. Stephens, Michael W. Baseler, H. Clifford Lane, Richard A. Lempicki:
DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists. Nucleic Acids Res. 35(Web-Server-Issue): 169-175 (2007) - 2006
- [j10]David Bryant, Jens Lagergren:
Compatibility of unrooted phylogenetic trees is FPT. Theor. Comput. Sci. 351(3): 296-302 (2006) - 2005
- [j9]Barry Zeeberg, Haiying Qin, Sudarshan Narasimhan, Margot Sunshine, Hong Cao, David W. Kane, Mark Reimers, Robert M. Stephens, David Bryant, Stanley K. Burt, Eldad Elnekave, Danielle M. Hari, Thomas A. Wynn, Charlotte Cunningham-Rundles, Donn M. Stewart, David Nelson, John N. Weinstein:
High-Throughput GoMiner, an 'industrial-strength' integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies of Common Variable Immune Deficiency (CVID). BMC Bioinform. 6: 168 (2005) - [j8]David Bryant:
On the Uniqueness of the Selection Criterion in Neighbor-Joining. J. Classif. 22(1): 3-15 (2005) - 2004
- [j7]David Bryant:
A lower bound for the breakpoint phylogeny problem. J. Discrete Algorithms 2(2): 229-255 (2004) - 2001
- [j6]David Bryant, Vincent Berry:
A Structured Family of Clustering and Tree Construction Methods. Adv. Appl. Math. 27(4): 705-732 (2001) - [j5]David Bryant, Mike A. Steel:
Constructing Optimal Trees from Quartets. J. Algorithms 38(1): 237-259 (2001) - 2000
- [j4]Sebastian Böcker, David Bryant, Andreas W. M. Dress, Mike A. Steel:
Algorithmic Aspects of Tree Amalgamation. J. Algorithms 37(2): 522-537 (2000) - [j3]David Sankoff, David Bryant, Mélanie Deneault, B. Franz Lang, Gertraud Burger:
Early Eukaryote Evolution Based on Mitochondrial Gene Order Breakpoints. J. Comput. Biol. 7(3-4): 521-535 (2000) - 1999
- [j2]David Bryant, David Sankoff:
Phylogenetic Reconstruction from Genome Order Data. Electron. Notes Discret. Math. 2: 158 (1999) - 1996
- [j1]David Bryant:
Hunting for Trees in Binary Character Sets: Efficient Algorithms for Extraction, Enumeration and Optimization. J. Comput. Biol. 3(2): 275-288 (1996)
Conference and Workshop Papers
- 2012
- [c13]Atheer A. Matroud, Christopher P. Tuffley, David Bryant, Michael D. Hendy:
A Comparison of Three Heuristic Methods for Solving the Parsing Problem for Tandem Repeats. BSB 2012: 37-48 - 2003
- [c12]David Bryant, Daniel H. Huson, Tobias H. Klöpper, Kay Nieselt-Struwe:
Distance Corrections on Recombinant Sequences. WABI 2003: 271-286 - 2002
- [c11]David Bryant, Vincent Moulton:
NeighborNet: An Agglomerative Method for the Construction of Planar Phylogenetic Networks. WABI 2002: 375-391 - 2001
- [c10]David Bryant, Andy McKenzie, Mike A. Steel:
The size of a maximum agreement subtree for random binary trees. Bioconsensus 2001: 55-65 - [c9]David Bryant:
A classification of consensus methods for phylogenetics. Bioconsensus 2001: 163-183 - 2000
- [c8]David Bryant:
A Lower Bound for the Breakpoint Phylogeny Problem. CPM 2000: 235-247 - [c7]David Bryant:
Optimal Agreement Supertrees. JOBIM 2000: 24-31 - [c6]David Sankoff, David Bryant, Mélanie Deneault, B. Franz Lang, Gertraud Burger:
Early eukaryote evolution based on mitochondrial gene order breakpoints. RECOMB 2000: 254-262 - [c5]David Bryant, John Tsang, Paul E. Kearney, Ming Li:
Computing the quartet distance between evolutionary trees. SODA 2000: 285-286 - [c4]Vincent Berry, David Bryant, Tao Jiang, Paul E. Kearney, Ming Li, Todd Wareham, Haoyong Zhang:
A practical algorithm for recovering the best supported edges of an evolutionary tree (extended abstract). SODA 2000: 287-296 - 1999
- [c3]Vincent Berry, David Bryant:
Faster reliable phylogenetic analysis. RECOMB 1999: 59-68 - [c2]Nadia El-Mabrouk, David Bryant, David Sankoff:
Reconstructing the pre-doubling genome. RECOMB 1999: 154-163 - [c1]David Bryant, Mike A. Steel:
Fast Algorithms for Constructing Optimal Trees from Quartets. SODA 1999: 147-155
Parts in Books or Collections
- 2013
- [p2]David Bryant, Jamie Kydd:
Forty Years of Model-Based Phylogeography. Models and Algorithms for Genome Evolution 2013: 17-28 - 2007
- [p1]David Bryant, Nicolas Galtier, Marie-Anne Poursat:
Likelihood calculation in molecular phylogenetics. Mathematics of Evolution and Phylogeny 2007
Informal and Other Publications
- 2021
- [i5]Lena Collienne, Kieran Elmes, Mareike Fischer, David Bryant, Alex Gavryushkin:
The Geometry of the space of Discrete Coalescent Trees. CoRR abs/2101.02751 (2021) - 2018
- [i4]Pei Wu, David Bryant, Paul F. Tupper:
Negative type diversities, a multi-dimensional analogue of negative type metrics. CoRR abs/1809.06523 (2018) - [i3]David Bryant, Céline Scornavacca:
An O(n log n) time Algorithm for computing the Path-length Distance between Trees. CoRR abs/1811.00619 (2018) - 2013
- [i2]David Bryant, Paul F. Tupper:
Diversities and the Geometry of Hypergraphs. CoRR abs/1312.5408 (2013) - 1997
- [i1]David Bryant, Paul Brittain:
APPN Implementer's Workshop Closed Pages Document DLSw v2.0 Enhancements. RFC 2166: 1-34 (1997)
Coauthor Index
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