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ORCIDVincent Berry
Person information
- affiliation: LIRMM Montpellier, France
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Books and Theses
- 2008
[b1]Vincent Berry:
On building and comparing trees Application to supertrees in phylogenetics. Montpellier 2 University, France, 2008
Journal Articles
- 2021
- [j20]Charles-Elie Rabier, Vincent Berry
, Marnus Stoltz, João D. Santos, Wensheng Wang, Jean-Christophe Glaszmann, Fabio Pardi, Céline Scornavacca:
On the inference of complex phylogenetic networks by Markov Chain Monte-Carlo. PLoS Comput. Biol. 17(9) (2021) - 2018
- [j19]Wandrille Duchemin, Guillaume Gence, Anne-Muriel Arigon Chifolleau, Lars Arvestad, Mukul S. Bansal, Vincent Berry, Bastien Boussau, François Chevenet, Nicolas Comte, Adrián A. Davín, Christophe Dessimoz, David Dylus, Damir Hasic, Diego Mallo, Rémi Planel, David Posada, Céline Scornavacca, Gergely J. Szöllosi, Louxin Zhang, Eric Tannier, Vincent Daubin:
RecPhyloXML: a format for reconciled gene trees. Bioinform. 34(21): 3646-3652 (2018) - 2016
- [j18]François Chevenet, Jean-Philippe Doyon, Céline Scornavacca, Edwin Jacox, Emmanuelle Jousselin, Vincent Berry:
SylvX: a viewer for phylogenetic tree reconciliations. Bioinform. 32(4): 608-610 (2016) - 2013
- [j17]Thi Hau Nguyen, Vincent Ranwez, Stéphanie Pointet, Anne-Muriel Arigon Chifolleau, Jean-Philippe Doyon, Vincent Berry:
Reconciliation and local gene tree rearrangement can be of mutual profit. Algorithms Mol. Biol. 8: 12 (2013) - [j16]Céline Scornavacca, Wojciech Paprotny, Vincent Berry, Vincent Ranwez:
Representing a Set of Reconciliations in a Compact Way. J. Bioinform. Comput. Biol. 11(2) (2013) - 2012
- [j15]Philippe Gambette, Vincent Berry, Christophe Paul:
Quartets and Unrooted phylogenetic Networks. J. Bioinform. Comput. Biol. 10(4) (2012) - 2011
- [j14]Jean-Philippe Doyon, Vincent Ranwez, Vincent Daubin, Vincent Berry:
Models, algorithms and programs for phylogeny reconciliation. Briefings Bioinform. 12(5): 392-400 (2011) - [j13]Céline Scornavacca, Vincent Berry, Vincent Ranwez:
Building species trees from larger parts of phylogenomic databases. Inf. Comput. 209(3): 590-605 (2011) - 2010
- [j12]François Chevenet, Olivier Croce, Maxime Hebrard, Richard Christen, Vincent Berry:
ScripTree: scripting phylogenetic graphics. Bioinform. 26(8): 1125-1126 (2010) - [j11]Sylvain Guillemot, Vincent Berry:
Fixed-Parameter Tractability of the Maximum Agreement Supertree Problem. IEEE ACM Trans. Comput. Biol. Bioinform. 7(2): 342-353 (2010) - 2009
- [j10]Daniel H. Huson, Regula Rupp, Vincent Berry, Philippe Gambette, Christophe Paul:
Computing galled networks from real data. Bioinform. 25(12) (2009) - [j9]Sylvain Guillemot, François Nicolas, Vincent Berry, Christophe Paul:
On the approximability of the Maximum Agreement SubTree and Maximum Compatible Tree problems. Discret. Appl. Math. 157(7): 1555-1570 (2009) - [j8]Vincent Berry, Christophe Paul, Sylvain Guillemot, François Nicolas:
Linear time 3-approximation for the MAST problem. ACM Trans. Algorithms 5(2): 23:1-23:18 (2009) - 2008
- [j7]Vincent Berry, Zeshan Peng, H. F. Ting:
From Constrained to Unconstrained Maximum Agreement Subtree in Linear Time. Algorithmica 50(3): 369-385 (2008) - [j6]Céline Scornavacca, Vincent Berry, Vincent Lefort, Emmanuel J. P. Douzery, Vincent Ranwez:
PhySIC_IST: cleaning source trees to infer more informative supertrees. BMC Bioinform. 9 (2008) - 2007
- [j5]R. R. K. Sharma, Vincent Berry:
Developing new formulations and relaxations of single stage capacitated warehouse location problem (SSCWLP): Empirical investigation for assessing relative strengths and computational effort. Eur. J. Oper. Res. 177(2): 803-812 (2007) - [j4]Vincent Berry, François Nicolas:
Maximum agreement and compatible supertrees. J. Discrete Algorithms 5(3): 564-591 (2007) - 2006
- [j3]Vincent Berry, François Nicolas:
Improved Parameterized Complexity of the Maximum Agreement Subtree and Maximum Compatible Tree Problems. IEEE ACM Trans. Comput. Biol. Bioinform. 3(3): 289-302 (2006) - 2001
- [j2]David Bryant, Vincent Berry:
A Structured Family of Clustering and Tree Construction Methods. Adv. Appl. Math. 27(4): 705-732 (2001) - 2000
- [j1]Vincent Berry, Olivier Gascuel:
Inferring evolutionary trees with strong combinatorial evidence. Theor. Comput. Sci. 240(2): 271-298 (2000)
Conference and Workshop Papers
- 2024
- [c19]Vincent Berry, Arnaud Castelltort, Benoit Lange, Joan Teriihoania, Chouki Tibermacine, Catia Trubiani:
Is it Worth Migrating a Monolith to Microservices? An Experience Report on Performance, Availability and Energy Usage. ICWS 2024: 944-954 - 2022
- [c18]Jeremiah J. Blanchard, John R. Hott, Vincent Berry, Rebecca Carroll, Bob Edmison, Richard Glassey, Oscar Karnalim, Brian Plancher, Seán Russell:
Stop Reinventing the Wheel! Promoting Community Software in Computing Education. ITiCSE-WGR 2022: 261-292 - [c17]Vincent Berry, Arnaud Castelltort, Chrysta Pelissier, Marion Rousseau, Chouki Tibermacine:
ShellOnYou: Learning by Doing Unix Command Line. ITiCSE (1) 2022: 379-385 - [c16]Jeremiah J. Blanchard, John R. Hott, Vincent Berry, Rebecca Carroll, Bob Edmison, Richard Glassey, Oscar Karnalim, Brian Plancher, Seán Russell:
Leveraging Community Software in CS Education to Avoid Reinventing the Wheel. ITiCSE (2) 2022: 580-581 - 2020
- [c15]Vincent Berry, Céline Scornavacca, Mathias Weller:
Scanning Phylogenetic Networks Is NP-hard. SOFSEM 2020: 519-530 - 2012
- [c14]Thi Hau Nguyen, Jean-Philippe Doyon, Stéphanie Pointet, Anne-Muriel Arigon Chifolleau, Vincent Ranwez, Vincent Berry:
Accounting for Gene Tree Uncertainties Improves Gene Trees and Reconciliation Inference. WABI 2012: 123-134 - 2010
- [c13]Jean-Philippe Doyon, Céline Scornavacca, K. Yu. Gorbunov, Gergely J. Szöllosi, Vincent Ranwez, Vincent Berry:
An Efficient Algorithm for Gene/Species Trees Parsimonious Reconciliation with Losses, Duplications and Transfers. RECOMB-CG 2010: 93-108 - 2009
- [c12]Philippe Gambette, Vincent Berry, Christophe Paul:
The Structure of Level-k Phylogenetic Networks. CPM 2009: 289-300 - [c11]Céline Scornavacca, Vincent Berry, Vincent Ranwez:
From Gene Trees to Species Trees through a Supertree Approach. LATA 2009: 702-714 - 2007
- [c10]Sylvain Guillemot, Vincent Berry:
Fixed-Parameter Tractability of the Maximum Agreement Supertree Problem. CPM 2007: 274-285 - 2005
- [c9]Vincent Berry, Sylvain Guillemot, François Nicolas, Christophe Paul:
On the Approximation of Computing Evolutionary Trees. COCOON 2005: 115-125 - 2004
- [c8]Vincent Berry, François Nicolas:
Maximum Agreement and Compatible Supertrees (Extended Abstract). CPM 2004: 205-219 - 2000
- [c7]Vincent Berry, David Bryant, Tao Jiang, Paul E. Kearney, Ming Li, Todd Wareham, Haoyong Zhang:
A practical algorithm for recovering the best supported edges of an evolutionary tree (extended abstract). SODA 2000: 287-296 - 1999
- [c6]Vincent Berry, Tao Jiang, Paul E. Kearney, Ming Li, Todd Wareham:
Quartet Cleaning: Improved Algorithms and Simulations. ESA 1999: 313-324 - [c5]Vincent Berry, David Bryant:
Faster reliable phylogenetic analysis. RECOMB 1999: 59-68 - 1997
- [c4]Vincent Berry, Olivier Gascuel:
Inferring Evolutionary Trees with Strong Combinatorial Evidence. COCOON 1997: 111-123 - 1995
- [c3]Vincent Berry, Philippe Ézéquel:
Évaluation répartie asynchrone de (certaines) requêtes DATALOG. JFPLC 1995: 405-407 - 1994
- [c2]Vincent Berry, Philippe Ézéquel:
Distinguer les variables distinguées. JFPLC 1994: 3-14 - 1993
- [c1]Vincent Berry, Philippe Ézéquel:
Generating Goals and Their Use In Recursive Query Processing. ILPS 1993: 649
Reference Works
- 2016
- [r2]Vincent Berry:
Maximum Compatible Tree. Encyclopedia of Algorithms 2016: 1230-1234 - 2008
- [r1]Vincent Berry:
Maximum Compatible Tree. Encyclopedia of Algorithms 2008
Coauthor Index
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