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ORCIDAlgorithms for Molecular Biology, Volume 2
Volume 2, 2007
- C. Steven Carmack, Lee Ann McCue
, Lee Aaron Newberg, Charles E. Lawrence:
PhyloScan: identification of transcription factor binding sites using cross-species evidence. - Jingjun Sun, Kagan Tuncay, Alaa Abi-Haidar, Lisa Ensman, Frank Stanley, Michael Trelinski, Peter J. Ortoleva:
Transcriptional regulatory network discovery via multiple method integration: application to e. coli K12. - Hui Yang, Srinivasan Parthasarathy, Duygu Ucar:
A spatio-temporal mining approach towards summarizing and analyzing protein folding trajectories. - Mohammed J. Zaki, George Karypis, Jiong Yang:
Data Mining in Bioinformatics (BIOKDD). - Koji Kadota, Ryoko Araki, Yuji Nakai, Masumi Abe:
GOGOT: a method for the identification of differentially expressed fragments from cDNA-AFLP data. - Kristin Reiche, Peter F. Stadler:
RNAstrand: reading direction of structured RNAs in multiple sequence alignments. - Chia Huey Ooi, Madhu Chetty, Shyh Wei Teng:
Characteristics of predictor sets found using differential prioritization. - David Bryant, Vincent Moulton, Andreas Spillner:
Consistency of the Neighbor-Net Algorithm. - Stefan Wolfsheimer, Bernd Burghardt, Alexander K. Hartmann:
Local sequence alignments statistics: deviations from Gumbel statistics in the rare-event tail. - Raffaele Giancarlo, Alessandro Siragusa, Enrico Siragusa, Filippo Utro:
A basic analysis toolkit for biological sequences. - Gilles Didier, Carito Guziolowski:
Mapping sequences by parts. - Rodrigo Gouveia-Oliveira, Anders Gorm Pedersen:
Finding coevolving amino acid residues using row and column weighting of mutual information and multi-dimensional amino acid representation. - Valentina Boeva, Julien Clément, Mireille Régnier, Mikhail A. Roytberg, Vsevolod J. Makeev:
Exact p-value calculation for heterotypic clusters of regulatory motifs and its application in computational annotation of cis-regulatory modules. - Andreas Spillner:
Review of "Reconstructing Evolution: New mathematical and computational advances" edited by Olivier Gascuel and Mike Steel. - Hélène Touzet, Jean-Stéphane Varré:
Efficient and accurate P-value computation for Position Weight Matrices. - Pedro Gabriel Ferreira, Paulo J. Azevedo:
Evaluating deterministic motif significance measures in protein databases.
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