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2020 – today
- 2024
[c51]Xiaoyi Chen, Siyuan Tang, Rui Zhu, Shijun Yan, Lei Jin, Zihao Wang, Liya Su, Zhikun Zhang, Xiaofeng Wang, Haixu Tang:
The Janus Interface: How Fine-Tuning in Large Language Models Amplifies the Privacy Risks. CCS 2024: 1285-1299- [c50]Zhixin Li, Rui Zhu, Zihao Wang, Jiale Li, Kaiyuan Liu, Yue Qin, Yongming Fan, Mingyu Gu, Zhihui Lu, Jie Wu, Hongfeng Chai, Xiaofeng Wang, Haixu Tang:
FairFix: Enhancing Fairness of Pre-Trained Deep Neural Networks with Scarce Data Resources. IDS 2024: 14-20 - [c49]Rui Zhu, Di Tang, Siyuan Tang, Zihao Wang, Guanhong Tao, Shiqing Ma, XiaoFeng Wang, Haixu Tang:
Gradient Shaping: Enhancing Backdoor Attack Against Reverse Engineering. NDSS 2024 - [c48]Benjamin Giovanni Iovino
, Haixu Tang, Yuzhen Ye:
Protein Domain Embeddings for Fast and Accurate Similarity Search. RECOMB 2024: 421-424 - [c47]Zihao Wang, Rui Zhu, Dongruo Zhou, Zhikun Zhang, John Mitchell, Haixu Tang, XiaoFeng Wang:
DPAdapter: Improving Differentially Private Deep Learning through Noise Tolerance Pre-training. USENIX Security Symposium 2024 - [c46]Dandan Xu, Di Tang, Yi Chen, XiaoFeng Wang, Kai Chen, Haixu Tang, Longxing Li:
Racing on the Negative Force: Efficient Vulnerability Root-Cause Analysis through Reinforcement Learning on Counterexamples. USENIX Security Symposium 2024 - [i18]Zihao Wang, Rui Zhu, Dongruo Zhou, Zhikun Zhang, John Mitchell, Haixu Tang, Xiaofeng Wang:
DPAdapter: Improving Differentially Private Deep Learning through Noise Tolerance Pre-training. CoRR abs/2403.02571 (2024) - [i17]Jinhong Yu, Yi Chen, Di Tang, Xiaozhong Liu, XiaoFeng Wang, Chen Wu, Haixu Tang:
LLM-Enhanced Software Patch Localization. CoRR abs/2409.06816 (2024) - 2023
- [j38]Haixu Tang:
Preface: RECOMB 2023 Special Issue. J. Comput. Biol. 30(11): 1145 (2023) - [c45]Xurui Li, Yue Qin, Rui Zhu, Tianqianjin Lin, Yongming Fan, Yangyang Kang, Kaisong Song, Fubang Zhao, Changlong Sun, Haixu Tang, Xiaozhong Liu:
STINMatch: Semi-Supervised Semantic-Topological Iteration Network for Financial Risk Detection via News Label Diffusion. EMNLP 2023: 9304-9315 - [c44]Rui Zhu, Di Tang, Siyuan Tang, Xiaofeng Wang, Haixu Tang:
Selective Amnesia: On Efficient, High-Fidelity and Blind Suppression of Backdoor Effects in Trojaned Machine Learning Models. SP 2023: 1-19 - [c43]Yi Chen, Di Tang, Yepeng Yao, Mingming Zha, XiaoFeng Wang, Xiaozhong Liu, Haixu Tang, Baoxu Liu:
Sherlock on Specs: Building LTE Conformance Tests through Automated Reasoning. USENIX Security Symposium 2023: 3529-3545 - [e1]Haixu Tang:
Research in Computational Molecular Biology - 27th Annual International Conference, RECOMB 2023, Istanbul, Turkey, April 16-19, 2023, Proceedings. Lecture Notes in Computer Science 13976, Springer 2023, ISBN 978-3-031-29118-0 [contents] - [i16]Rui Zhu, Di Tang, Siyuan Tang, Guanhong Tao, Shiqing Ma, XiaoFeng Wang, Haixu Tang:
Gradient Shaping: Enhancing Backdoor Attack Against Reverse Engineering. CoRR abs/2301.12318 (2023) - [i15]Xiaotian Zhou, Qian Wang, Xiaofeng Wang, Haixu Tang, Xiaozhong Liu:
Large Language Model Soft Ideologization via AI-Self-Consciousness. CoRR abs/2309.16167 (2023) - [i14]Xiaoyi Chen, Siyuan Tang, Rui Zhu, Shijun Yan, Lei Jin, Zihao Wang, Liya Su, XiaoFeng Wang, Haixu Tang:
The Janus Interface: How Fine-Tuning in Large Language Models Amplifies the Privacy Risks. CoRR abs/2310.15469 (2023) - 2022
- [j37]Tsung-Ting Kuo, Xiaoqian Jiang, Haixu Tang, XiaoFeng Wang, Arif Ozgun Harmanci, Miran Kim, Kai W. Post, Diyue Bu, Tyler Bath, Jihoon Kim, Weijie Liu, Hongbo Chen, Lucila Ohno-Machado:
The evolving privacy and security concerns for genomic data analysis and sharing as observed from the iDASH competition. J. Am. Medical Informatics Assoc. 29(12): 2182-2190 (2022) - [j36]Wontack Han, Haixu Tang, Yuzhen Ye:
Locality-Sensitive Hashing-Based k-Mer Clustering for Identification of Differential Microbial Markers Related to Host Phenotype. J. Comput. Biol. 29(7): 738-751 (2022) - [c42]Yi Chen, Di Tang, Yepeng Yao, Mingming Zha, XiaoFeng Wang, Xiaozhong Liu, Haixu Tang, Dongfang Zhao:
Seeing the Forest for the Trees: Understanding Security Hazards in the 3GPP Ecosystem through Intelligent Analysis on Change Requests. USENIX Security Symposium 2022: 17-34 - [i13]Di Tang, Rui Zhu, XiaoFeng Wang, Haixu Tang, Yi Chen:
Understanding Impacts of Task Similarity on Backdoor Attack and Detection. CoRR abs/2210.06509 (2022) - [i12]Rui Zhu, Di Tang, Siyuan Tang, XiaoFeng Wang, Haixu Tang:
Selective Amnesia: On Efficient, High-Fidelity and Blind Suppression of Backdoor Effects in Trojaned Machine Learning Models. CoRR abs/2212.04687 (2022) - 2021
- [j35]Diyue Bu, XiaoFeng Wang, Haixu Tang:
Haplotype-based membership inference from summary genomic data. Bioinform. 37(Supplement): 161-168 (2021) - [c41]Chathura Widanage, Weijie Liu, Jiayu Li, Hongbo Chen, XiaoFeng Wang, Haixu Tang, Judy Fox:
HySec-Flow: Privacy-Preserving Genomic Computing with SGX-based Big-Data Analytics Framework. CLOUD 2021: 733-743 - [c40]Weijie Liu, Wenhao Wang, Hongbo Chen, Xiaofeng Wang, Yaosong Lu, Kai Chen, Xinyu Wang, Qintao Shen, Yi Chen, Haixu Tang:
Practical and Efficient in-Enclave Verification of Privacy Compliance. DSN 2021: 413-425 - [c39]Yi Chen, Yepeng Yao, XiaoFeng Wang, Dandan Xu, Chang Yue, Xiaozhong Liu, Kai Chen, Haixu Tang, Baoxu Liu:
Bookworm Game: Automatic Discovery of LTE Vulnerabilities Through Documentation Analysis. SP 2021: 1197-1214 - [c38]Di Tang, XiaoFeng Wang, Haixu Tang, Kehuan Zhang:
Demon in the Variant: Statistical Analysis of DNNs for Robust Backdoor Contamination Detection. USENIX Security Symposium 2021: 1541-1558 - [c37]Tongxin Wang, Zhengming Ding, Wei Shao, Haixu Tang, Kun Huang:
Towards Fair Cross-Domain Adaptation via Generative Learning. WACV 2021: 454-463 - [i11]Chathura Widanage, Weijie Liu, Jiayu Li, Hongbo Chen, XiaoFeng Wang, Haixu Tang, Judy Fox:
HySec-Flow: Privacy-Preserving Genomic Computing with SGX-based Big-Data Analytics Framework. CoRR abs/2107.12423 (2021) - [i10]Weijie Liu, Hongbo Chen, XiaoFeng Wang, Zhi Li, Danfeng Zhang, Wenhao Wang, Haixu Tang:
Understanding TEE Containers, Easy to Use? Hard to Trust. CoRR abs/2109.01923 (2021) - 2020
- [j34]Yan Song, Haixu Tang, Haoyu Zhang, Qin Zhang:
Overlap detection on long, error-prone sequencing reads via smooth q-gram. Bioinform. 36(19): 4838-4845 (2020) - [j33]Rui Zhu, Chao Jiang, Xiaofeng Wang, Shuang Wang, Hao Zheng, Haixu Tang:
Privacy-preserving construction of generalized linear mixed model for biomedical computation. Bioinform. 36(Supplement-1): i128-i135 (2020) - [c36]Yunhui Long, Lei Wang, Diyue Bu, Vincent Bindschaedler, XiaoFeng Wang, Haixu Tang, Carl A. Gunter, Kai Chen:
A Pragmatic Approach to Membership Inferences on Machine Learning Models. EuroS&P 2020: 521-534 - [c35]Yuan Xie, Yulong Pei, Yun Lu, Haixu Tang, Yuan Zhou:
Learning Structural Genetic Information via Graph Neural Embedding. ISBRA 2020: 250-261 - [c34]Gamze Gürsoy, Megan Doerr, John Wilbanks, Jennifer K. Wagner, Haixu Tang, Steven E. Brenner:
Navigating Ethical Quandaries with the Privacy Dilemma of Biomedical Datasets. PSB 2020: 736-738 - [i9]Tongxin Wang, Zhengming Ding, Wei Shao, Haixu Tang, Kun Huang:
Towards Fair Cross-Domain Adaptation via Generative Learning. CoRR abs/2003.02366 (2020) - [i8]Rui Zhu, Bo Lin, Haixu Tang:
Bounding The Number of Linear Regions in Local Area for Neural Networks with ReLU Activations. CoRR abs/2007.06803 (2020) - [i7]Weijie Liu, Wenhao Wang, XiaoFeng Wang, Xiaozhu Meng, Yaosong Lu, Hongbo Chen, Xinyu Wang, Qingtao Shen, Kai Chen, Haixu Tang, Yi Chen, Luyi Xing:
Confidential Attestation: Efficient in-Enclave Verification of Privacy Policy Compliance. CoRR abs/2007.10513 (2020)
2010 – 2019
- 2019
- [j32]Wazim Mohammed Ismail, Etienne Nzabarushimana, Haixu Tang:
Algorithmic approaches to clonal reconstruction in heterogeneous cell populations. Quant. Biol. 7(4): 255-265 (2019) - [j31]Erman Ayday, Muhammad Naveed, Haixu Tang:
GenoPri'17: International Workshop on Genome Privacy and Security. IEEE ACM Trans. Comput. Biol. Bioinform. 16(4): 1322-1323 (2019) - [c33]Inken Hagestedt, Yang Zhang, Mathias Humbert, Pascal Berrang, Haixu Tang, XiaoFeng Wang, Michael Backes:
MBeacon: Privacy-Preserving Beacons for DNA Methylation Data. NDSS 2019 - [c32]Gamze Gürsoy, Arif Ozgun Harmanci, Haixu Tang, Erman Ayday, Steven E. Brenner:
Session Introduction. PSB 2019: 386-390 - [i6]Wenhao Wang, Yichen Jiang, Qintao Shen, Weihao Huang, Hao Chen, Shuang Wang, Xiaofeng Wang, Haixu Tang, Kai Chen, Kristin E. Lauter, Dongdai Lin:
Toward Scalable Fully Homomorphic Encryption Through Light Trusted Computing Assistance. CoRR abs/1905.07766 (2019) - [i5]Di Tang, Xiaofeng Wang, Haixu Tang, Kehuan Zhang:
Demon in the Variant: Statistical Analysis of DNNs for Robust Backdoor Contamination Detection. CoRR abs/1908.00686 (2019) - 2018
- [j30]Yen-Yi Lin, Alexander Gawronski, Faraz Hach, Sujun Li, Ibrahim Numanagic, Iman Sarrafi, Swati Mishra, Andrew W. McPherson, Colin C. Collins, Milan Radovich, Haixu Tang, Süleyman Cenk Sahinalp:
Computational identification of micro-structural variations and their proteogenomic consequences in cancer. Bioinform. 34(10): 1672-1681 (2018) - [j29]Yongan Zhao, Xiaofeng Wang, Haixu Tang:
A Secure Alignment Algorithm for Mapping Short Reads to Human Genome. J. Comput. Biol. 25(6): 529-540 (2018) - [c31]Haoyu Zhang, Qin Zhang, Haixu Tang:
Smooth q-Gram, and Its Applications to Detection of Overlaps among Long, Error-Prone Sequencing Reads. CIKM 2018: 267-276 - [c30]Sujun Li, Alex DeCourcy, Haixu Tang:
Constrained De Novo Sequencing of neo-Epitope Peptides Using Tandem Mass Spectrometry. RECOMB 2018: 138-153 - [i4]Haoyu Zhang, Qin Zhang, Haixu Tang:
Smooth q-Gram, and Its Applications to Detection of Overlaps among Long, Error-Prone Sequencing Reads. CoRR abs/1802.01189 (2018) - [i3]Yunhui Long, Vincent Bindschaedler, Lei Wang, Diyue Bu, Xiaofeng Wang, Haixu Tang, Carl A. Gunter, Kai Chen:
Understanding Membership Inferences on Well-Generalized Learning Models. CoRR abs/1802.04889 (2018) - 2017
- [j28]Zhiqun Xie, Haixu Tang:
ISEScan: automated identification of insertion sequence elements in prokaryotic genomes. Bioinform. 33(21): 3340-3347 (2017) - [j27]Haixu Tang, Etienne Nzabarushimana:
STRScan: targeted profiling of short tandem repeats in whole-genome sequencing data. BMC Bioinform. 18(S-11): 31-36 (2017) - [j26]Hussein Mohsen, Haixu Tang, Yuzhen Ye:
Improving de novo metatranscriptome assembly via machine learning algorithms. Int. J. Comput. Biol. Drug Des. 10(2): 91-107 (2017) - [j25]Jean Louis Raisaro, Florian Tramèr, Zhanglong Ji, Diyue Bu, Yongan Zhao, W. Knox Carey, David D. Lloyd, Heidi Sofia, Dixie Baker, Paul Flicek, Suyash S. Shringarpure, Carlos D. Bustamante, Shuang Wang, Xiaoqian Jiang, Lucila Ohno-Machado, Haixu Tang, XiaoFeng Wang, Jean-Pierre Hubaux:
Addressing Beacon re-identification attacks: quantification and mitigation of privacy risks. J. Am. Medical Informatics Assoc. 24(4): 799-805 (2017) - [c29]Xuefu Wang, Sujun Li, Wenjing Peng, Yehia Mechref, Haixu Tang:
A Sparse Latent Regression Approach for Integrative Analysis of Glycomic and Glycotranscriptomic Data. BCB 2017: 273-278 - [c28]Wenhao Wang, Guoxing Chen, Xiaorui Pan, Yinqian Zhang, XiaoFeng Wang, Vincent Bindschaedler, Haixu Tang, Carl A. Gunter:
Leaky Cauldron on the Dark Land: Understanding Memory Side-Channel Hazards in SGX. CCS 2017: 2421-2434 - [i2]Wenhao Wang, Guoxing Chen, Xiaorui Pan, Yinqian Zhang, XiaoFeng Wang, Vincent Bindschaedler, Haixu Tang, Carl A. Gunter:
Leaky Cauldron on the Dark Land: Understanding Memory Side-Channel Hazards in SGX. CoRR abs/1705.07289 (2017) - 2016
- [j24]Yuzhen Ye, Haixu Tang:
Utilizing de Bruijn graph of metagenome assembly for metatranscriptome analysis. Bioinform. 32(7): 1001-1008 (2016) - [j23]Hyungro Lee, Min Su Lee, Wazim Mohammed Ismail, Mina Rho, Geoffrey C. Fox, Sangyoon Oh, Haixu Tang:
MGEScan: a Galaxy-based system for identifying retrotransposons in genomes. Bioinform. 32(16): 2502-2504 (2016) - [j22]Haixu Tang, Sujun Li, Yuzhen Ye:
A Graph-Centric Approach for Metagenome-Guided Peptide and Protein Identification in Metaproteomics. PLoS Comput. Biol. 12(12) (2016) - [c27]Sujun Li, Nuno Bandeira, XiaoFeng Wang, Haixu Tang:
On the Privacy Risks of Sharing Clinical Proteomics Data. CRI 2016 - 2015
- [j21]Yongan Zhao, XiaoFeng Wang, Xiaoqian Jiang, Lucila Ohno-Machado, Haixu Tang:
Choosing blindly but wisely: differentially private solicitation of DNA datasets for disease marker discovery. J. Am. Medical Informatics Assoc. 22(1): 100-108 (2015) - [c26]Chao Ji, Yong Fuga Li, Earl P. Bellinger, Sujun Li, Randy J. Arnold, Predrag Radivojac, Haixu Tang:
A maximum-likelihood approach to absolute protein quantification in mass spectrometry. BCB 2015: 296-305 - [c25]Xiao Shaun Wang, Yan Huang, Yongan Zhao, Haixu Tang, XiaoFeng Wang, Diyue Bu:
Efficient Genome-Wide, Privacy-Preserving Similar Patient Query based on Private Edit Distance. CCS 2015: 492-503 - [i1]Yuzhen Ye, Haixu Tang:
Utilizing de Bruijn graph of metagenome assembly for metatranscriptome analysis. CoRR abs/1504.01304 (2015) - 2014
- [j20]Wazim Ismail, Yuzhen Ye, Haixu Tang:
Gene finding in metatranscriptomic sequences. BMC Bioinform. 15(S-9): S8 (2014) - [j19]Heewook Lee, Ellen Popodi, Patricia L. Foster, Haixu Tang:
Detection of Structural Variants Involving Repetitive Regions in the Reference Genome. J. Comput. Biol. 21(3): 219-233 (2014) - [j18]Xiaoqian Jiang, Yongan Zhao, Xiaofeng Fang, Bradley A. Malin, Shuang Wang, Lucila Ohno-Machado, Haixu Tang:
A community assessment of privacy preserving techniques for human genomes. BMC Medical Informatics Decis. Mak. 14(S-1): S1 (2014) - [c24]Mingjie Wang, Haixu Tang, Yuzhen Ye:
Identification and characterization of accessory genomes in bacterial species based on genome comparison and metagenomic recruitment. BIBM 2014: 17-24 - [c23]Diyue Bu, Haixu Tang:
Quasispecies reconstruction based on vertex coloring algorithms. BIBM 2014: 63-66 - [c22]Yang Ruan, Geoffrey L. House, Saliya Ekanayake, Ursel Schutte, James D. Bever, Haixu Tang, Geoffrey C. Fox:
Integration of Clustering and Multidimensional Scaling to Determine Phylogenetic Trees as Spherical Phylograms Visualized in 3 Dimensions. CCGRID 2014: 720-729 - 2013
- [j17]Chuan-Yih Yu, Anoop M. Mayampurath, Yunli Hu, Shiyue Zhou, Yehia Mechref, Haixu Tang:
Automated annotation and quantification of glycans using liquid chromatography-mass spectrometry. Bioinform. 29(13): 1706-1707 (2013) - [j16]Dazhi Jiao, Yuzhen Ye, Haixu Tang:
Probabilistic Inference of Biochemical Reactions in Microbial Communities from Metagenomic Sequences. PLoS Comput. Biol. 9(3) (2013) - [c21]Sujun Li, Randy J. Arnold, Haixu Tang, Predrag Radivojac:
Improving phosphopeptide identification in shotgun proteomics by supervised filtering of peptide-spectrum matches. BCB 2013: 316 - 2012
- [j15]Yongan Zhao, Haixu Tang, Yuzhen Ye:
RAPSearch2: a fast and memory-efficient protein similarity search tool for next-generation sequencing data. Bioinform. 28(1): 125-126 (2012) - [j14]Heewook Lee, Ellen Popodi, Patricia L. Foster, Haixu Tang:
Detecting structural variants involving repetitive elements: capturing transposition events of IS elements in the genome of Escherichia coli. BMC Bioinform. 13(S-18): A12 (2012) - [j13]Mingjie Wang, Yuzhen Ye, Haixu Tang:
A de Bruijn Graph Approach to the Quantification of Closely-Related Genomes in a Microbial Community. J. Comput. Biol. 19(6): 814-825 (2012) - [c20]Yang Ruan, Saliya Ekanayake, Mina Rho, Haixu Tang, Seung-Hee Bae, Judy Qiu, Geoffrey C. Fox:
DACIDR: deterministic annealed clustering with interpolative dimension reduction using a large collection of 16S rRNA sequences. BCB 2012: 329-336 - [c19]XiaoFeng Wang, Haixu Tang:
Privacy Protection in Sharing Personal Genome Sequencing Data. HISB 2012: 143 - [c18]Yangyi Chen, Bo Peng, XiaoFeng Wang, Haixu Tang:
Large-Scale Privacy-Preserving Mapping of Human Genomic Sequences on Hybrid Clouds. NDSS 2012 - 2011
- [j12]Yuzhen Ye, Jeong-Hyeon Choi, Haixu Tang:
RAPSearch: a Fast Protein Similarity Search Tool for Short Reads. BMC Bioinform. 12: 159 (2011) - [j11]Seungmook Lee, Min-Seok Kwon, Hyoung-Joo Lee, Young-Ki Paik, Haixu Tang, Jae K. Lee, Taesung Park:
Enhanced peptide quantification using spectral count clustering and cluster abundance. BMC Bioinform. 12: 423 (2011) - [c17]Xiao-yong Zhou, Bo Peng, Yong Fuga Li, Yangyi Chen, Haixu Tang, XiaoFeng Wang:
To Release or Not to Release: Evaluating Information Leaks in Aggregate Human-Genome Data. ESORICS 2011: 607-627 - [c16]Neethu Shah, Haixu Tang, Thomas G. Doak, Yuzhen Ye:
Comparing Bacterial Communities Inferred from 16s Rrna Gene Sequencing and Shotgun Metagenomics. Pacific Symposium on Biocomputing 2011: 165-176
2000 – 2009
- 2009
- [j10]Yuzhen Ye, Haixu Tang:
An Orfome Assembly Approach to Metagenomics Sequences Analysis. J. Bioinform. Comput. Biol. 7(3): 455-471 (2009) - [j9]Yong Fuga Li, Randy J. Arnold, Yixue Li, Predrag Radivojac, Quanhu Sheng, Haixu Tang:
A Bayesian Approach to Protein Inference Problem in Shotgun Proteomics. J. Comput. Biol. 16(8): 1183-1193 (2009) - [c15]Rui Wang, XiaoFeng Wang, Zhou Li, Haixu Tang, Michael K. Reiter, Zheng Dong:
Privacy-preserving genomic computation through program specialization. CCS 2009: 338-347 - [c14]Rui Wang, Yong Fuga Li, XiaoFeng Wang, Haixu Tang, Xiao-yong Zhou:
Learning your identity and disease from research papers: information leaks in genome wide association study. CCS 2009: 534-544 - [c13]Geoffrey C. Fox, Xiaohong Qiu, Scott Beason, Jong Youl Choi, Jaliya Ekanayake, Thilina Gunarathne, Mina Rho, Haixu Tang, Neil Devadasan, Gilbert Liu:
Biomedical Case Studies in Data Intensive Computing. CloudCom 2009: 2-18 - 2008
- [j8]Pedro Alves, Randy J. Arnold, David E. Clemmer, Yixue Li, James P. Reilly, Quanhu Sheng, Haixu Tang, Zhiyin Xun, Rong Zeng, Predrag Radivojac:
Fast and accurate identification of semi-tryptic peptides in shotgun proteomics. Bioinform. 24(1): 102-109 (2008) - [j7]Jeong-Hyeon Choi, Sun Kim, Haixu Tang, Justen Andrews, Don G. Gilbert, John Colbourne:
A machine-learning approach to combined evidence validation of genome assemblies. Bioinform. 24(6): 744-750 (2008) - [c12]Yong Fuga Li, Randy J. Arnold, Yixue Li, Predrag Radivojac, Quanhu Sheng, Haixu Tang:
A Bayesian Approach to Protein Inference Problem in Shotgun Proteomics. RECOMB 2008: 167-180 - 2007
- [j6]Seung-Hee Bae, Haixu Tang, Jing Wu, Jun Xie, Sun Kim:
dPattern: transcription factor binding site (TFBS) discovery in human genome using a discriminative pattern analysis. Bioinform. 23(19): 2619-2621 (2007) - [j5]Degui Zhi, Uri Keich, Pavel A. Pevzner, Steffen Heber, Haixu Tang:
Correcting Base-Assignment Errors in Repeat Regions of Shotgun Assembly. IEEE ACM Trans. Comput. Biol. Bioinform. 4(1): 54-64 (2007) - [c11]Pedro Alves, Randy J. Arnold, Milos V. Novotny, Predrag Radivojac, James P. Reilly, Haixu Tang:
Advancement in Protein Inference from Shotgun Proteomics Using Peptide Detectability. Pacific Symposium on Biocomputing 2007: 409-420 - [p1]Haixu Tang, Sun Kim:
Bioinformatics: Mining the Massive Data from High Throughput Genomics Experiments. Analysis of Biological Data: A Soft Computing Approach 2007: 3-24 - 2006
- [j4]Vineet Bafna, Haixu Tang, Shaojie Zhang:
Consensus Folding of Unaligned RNA Sequences Revisited. J. Comput. Biol. 13(2): 283-295 (2006) - [c10]Haixu Tang, Randy J. Arnold, Pedro Alves, Zhiyin Xun, David E. Clemmer, Milos V. Novotny, James P. Reilly, Predrag Radivojac:
A computational approach toward label-free protein quantification using predicted peptide detectability. ISMB (Supplement of Bioinformatics) 2006: 481-488 - [c9]Randy J. Arnold, Narmada Jayasankar, Divya Aggarwal, Haixu Tang, Predrag Radivojac:
A Machine Learning Approach to Predicting Peptide Fragmentation Spectra. Pacific Symposium on Biocomputing 2006: 219-230 - [c8]Yin Wu, Yehia Mechref, Iveta Klouckova, Milos V. Novotny, Haixu Tang:
A Computational Approach for the Identification of Site-Specific Protein Glycosylations Through Ion-Trap Mass Spectrometry. Systems Biology and Computational Proteomics 2006: 96-107 - [c7]Rupali Patwardhan, Haixu Tang, Sun Kim, Mehmet M. Dalkilic:
An Approximate de Bruijn Graph Approach to Multiple Local Alignment and Motif Discovery in Protein Sequences. VDMB 2006: 158-169 - 2005
- [c6]Haixu Tang, Yehia Mechref, Milos V. Novotny:
Automated interpretation of MS/MS spectra of oligosaccharides. ISMB (Supplement of Bioinformatics) 2005: 431-439 - [c5]Vineet Bafna, Haixu Tang, Shaojie Zhang:
Consensus Folding of Unaligned RNA Sequences Revisited. RECOMB 2005: 172-187 - 2004
- [j3]Qiang Tu, Haixu Tang, Dafu Ding:
MedBlast: searching articles related to a biological sequence. Bioinform. 20(1): 75-77 (2004) - [j2]Mark Chaisson, Pavel A. Pevzner, Haixu Tang:
Fragment assembly with short reads. Bioinform. 20(13): 2067-2074 (2004) - [c4]Pavel A. Pevzner, Haixu Tang, Glenn Tesler:
De novo repeat classification and fragment assembly. RECOMB 2004: 213-222 - 2002
- [c3]Steffen Heber, Max A. Alekseyev, Sing-Hoi Sze, Haixu Tang, Pavel A. Pevzner:
Splicing graphs and EST assembly problem. ISMB 2002: 181-188 - 2001
- [j1]Semyon Kruglyak, Haixu Tang:
A New Estimator of Significance of Correlation in Time Series Data. J. Comput. Biol. 8(5): 463-470 (2001) - [c2]Pavel A. Pevzner, Haixu Tang:
Fragment assembly with double-barreled data. ISMB (Supplement of Bioinformatics) 2001: 225-233 - [c1]Pavel A. Pevzner, Haixu Tang, Michael S. Waterman:
A new approach to fragment assembly in DNA sequencing. RECOMB 2001: 256-267
Coauthor Index
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