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Analysis of Biological Data: A Soft Computing Approach 2007
- Sanghamitra Bandyopadhyay, Ujjwal Maulik, Jason Tsong-Li Wang:
Analysis of Biological Data: A Soft Computing Approach. Science, Engineering, and Biology Informatics 3, World Scientific 2007, ISBN 981-270-780-8
Part I: Overview
- Haixu Tang, Sun Kim:
Bioinformatics: Mining the Massive Data from High Throughput Genomics Experiments. 3-24 - Amit Konar, Swagatam Das:
An Introduction to Soft Computing. 25-56
Part II: Biological Sequence and Structure Analysis
- José E. Gallardo, Carlos Cotta, Antonio J. Fernández:
Reconstructing Phylogenies with Memetic Algorithms and Branch-and-Bound. 59-84 - Jason T. L. Wang, Xiaoming Wu:
Classification of RNA Sequences with Support Vector Machines. 85-108 - Arun Krishnan, Kuo-Bin Li:
Beyond String Algorithms: Protein Sequence Analysis Using Wavelet Transforms. 109-131 - Nripendra Lal Shrestha, Takenao Ohkawa:
Filtering Protein Surface Motifs Using Negative Instances of Active Sites Candidates. 133-152 - Gianluca Pollastri, Davide Baù, Alessandro Vullo:
Distill: A Machine Learning Approach to Ab Initio Protein Structure Prediction. 153-181 - Sanghamitra Bandyopadhyay, Santanu Santra, Ujjwal Maulik, Heinz Mühlenbein:
In Silico Design of Ligands Using Properties of Target Active Sites. 183-201
Part III: Gene Expression and Microarray Data Analysis
- Nasimul Noman, Hitoshi Iba:
Inferring Regulations in a Genomic Network from Gene Expression Profiles. 205-229 - Kalyanmoy Deb, Abbadi Raji Reddy, Shamik Chaudhuri:
A Reliable Classification of Gene Clusters for Cancer Samples Using a Hybrid Multi-Objective Evolutionary Procedure. 231-257 - Ankur Gupta, Vaidyanathan K. Jayaraman, Bhaskar D. Kulkarni:
Feature Selection for Cancer Classification Using Ant Colony Optimization and Support Vector Machines. 259-280 - Sung-Bae Cho, Han-Saem Park:
Sophisticated Methods for Cancer Classification Using Microarray Data. 281-302 - Anirban Mukhopadhyay, Ujjwal Maulik, Sanghamitra Bandyopadhyay:
Multiobjective Evolutionary Approach to Fuzzy Clustering of Microarray Data. 303-328
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