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ORCIDStephan C. Schürer
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2020 – today
- 2023
[j27]Steve Penn, Jane Lomax
, Anneli Karlsson, Vincent Antonucci, Carl-Dieter Zachmann, Samantha Kanza, Stephan C. Schürer, John Turner:
An extension of the BioAssay Ontology to include pharmacokinetic/pharmacodynamic terminology for the enrichment of scientific workflows. J. Biomed. Semant. 14(1): 10 (2023)- [j26]Keith J. Kelleher, Timothy Sheils, Stephen L. Mathias, Jeremy J. Yang, Vincent T. Metzger, Vishal B. Siramshetty, Dac-Trung Nguyen, Lars Juhl Jensen, Dusica Vidovic, Stephan C. Schürer, Jayme Holmes, Karlie R. Sharma, Ajay Pillai, Cristian Bologa, Jeremy S. Edwards, Ewy A. Mathé, Tudor I. Oprea:
Pharos 2023: an integrated resource for the understudied human proteome. Nucleic Acids Res. 51(D1): 1405-1416 (2023) - [j25]Derek J. Essegian, Valery Chavez, Rabia Khurshid, Jaime R. Merchan, Stephan C. Schürer:
AI-Assisted chemical probe discovery for the understudied Calcium-Calmodulin Dependent Kinase, PNCK. PLoS Comput. Biol. 19(5) (2023) - [j24]Derek J. Essegian, Valery Chavez, Rabia Khurshid, Jaime R. Merchan, Stephan C. Schürer:
Correction: AI-Assisted chemical probe discovery for the understudied Calcium-Calmodulin Dependent Kinase, PNCK. PLoS Comput. Biol. 19(11) (2023) - 2022
- [j23]John Erol Evangelista, Daniel J. B. Clarke, Zhuorui Xie, Alexander Lachmann, Minji Jeon, Kerwin Chen, Kathleen M. Jagodnik, Sherry L. Jenkins, Maxim V. Kuleshov, Megan L. Wojciechowicz, Stephan C. Schürer, Mario Medvedovic, Avi Ma'ayan:
SigCom LINCS: data and metadata search engine for a million gene expression signatures. Nucleic Acids Res. 50(W1): 697-709 (2022) - [j22]Rimpi Khurana, Stephan C. Schürer:
The Clinical Kinase Index (CKI): A user friendly application to prioritize kinases as prospective cancer drug targets. Softw. Impacts 12: 100257 (2022) - 2021
- [j21]Timothy Sheils, Stephen L. Mathias, Keith J. Kelleher, Vishal B. Siramshetty, Dac-Trung Nguyen, Cristian Bologa, Lars Juhl Jensen, Dusica Vidovic, Amar Koleti, Stephan C. Schürer, Anna Waller, Jeremy J. Yang, Jayme Holmes, Giovanni Bocci, Noel Southall, Poorva Dharkar, Ewy A. Mathé, Anton Simeonov, Tudor I. Oprea:
TCRD and Pharos 2021: mining the human proteome for disease biology. Nucleic Acids Res. 49(Database-Issue): D1334-D1346 (2021) - 2020
- [j20]Vasileios Stathias, John Paul Turner, Amar Koleti, Dusica Vidovic, Daniel J. Cooper, Mehdi Fazel-Najafabadi, Marcin Pilarczyk, Raymond Terryn, Caty Chung, Afoma Umeano, Daniel J. B. Clarke, Alexander Lachmann, John Erol Evangelista, Avi Ma'ayan, Mario Medvedovic, Stephan C. Schürer:
LINCS Data Portal 2.0: next generation access point for perturbation-response signatures. Nucleic Acids Res. 48(Database-Issue): D431-D439 (2020) - [j19]Behrouz Shamsaei, Szymon Chojnacki, Marcin Pilarczyk, Mehdi Fazel-Najafabadi, Wen Niu, Chuming Chen, Karen Ross, Andrea Matlock, Jeremy Muhlich, Somchai Chutipongtanate, Jie Zheng, John Turner, Dusica Vidovic, Jake Jaffe, Michael J. MacCoss, Cathy Wu, Ajay Pillai, Avi Ma'ayan, Stephan C. Schürer, Michal Kouril, Mario Medvedovic, Jarek Meller:
piNET: a versatile web platform for downstream analysis and visualization of proteomics data. Nucleic Acids Res. 48(Webserver-Issue): W85-W93 (2020)
2010 – 2019
- 2019
- [j18]Yongqun He, William D. Duncan, Daniel J. Cooper, Jens Hansen, Ravi Iyengar, Edison Ong, Kendal Walker, Omar Tibi, Sam Smith, Lucas M. Serra, Jie Zheng, Sirarat Sarntivijai, Stephan C. Schürer, K. Sue O'Shea, Alexander D. Diehl:
OSCI: standardized stem cell ontology representation and use cases for stem cell investigation. BMC Bioinform. 20-S(5): 237-247 (2019) - [j17]Oleg Ursu, Jayme Holmes, Cristian Bologa, Jeremy J. Yang, Stephen L. Mathias, Vasileios Stathias, Dac-Trung Nguyen, Stephan C. Schürer, Tudor I. Oprea:
DrugCentral 2018: an update. Nucleic Acids Res. 47(Database-Issue): D963-D970 (2019) - 2018
- [j16]Amar Koleti, Raymond Terryn, Vasileios Stathias, Caty Chung, Daniel J. Cooper, John Paul Turner, Dusica Vidovic, Michele Forlin, Tanya T. Kelley, Alessandro D'Urso, Bryce K. Allen, Denis Torre, Kathleen M. Jagodnik, Lily Wang, Sherry L. Jenkins, Christopher Mader, Wen Niu, Mehdi Fazel, Naim Al Mahi, Marcin Pilarczyk, Nicholas A. Clark, Behrouz Shamsaei, Jarek Meller, Juozas Vasiliauskas, John Reichard, Mario Medvedovic, Avi Ma'ayan, Ajay Pillai, Stephan C. Schürer:
Data Portal for the Library of Integrated Network-based Cellular Signatures (LINCS) program: integrated access to diverse large-scale cellular perturbation response data. Nucleic Acids Res. 46(Database-Issue): D558-D566 (2018) - [c11]Qiong Cheng, Saurabh Mehta, Stephan C. Schürer:
A Gene Family-led Meta-Analysis of Drug-Target Interactions. BIBM 2018: 1618-1623 - [c10]Mark A. Musen, Susanna-Assunta Sansone, Kei-Hoi Cheung, Steven H. Kleinstein, Morgan Crafts, Stephan C. Schürer, John Graybeal:
CEDAR: Semantic Web Technology to Support Open Science. WWW (Companion Volume) 2018: 427-428 - 2017
- [j15]Daniel Cannon, Jeremy J. Yang, Stephen L. Mathias, Oleg Ursu, Subramani Mani, Anna Waller, Stephan C. Schürer, Lars Juhl Jensen, Larry A. Sklar, Cristian Bologa, Tudor I. Oprea:
TIN-X: target importance and novelty explorer. Bioinform. 33(16): 2601-2603 (2017) - [j14]Yu Lin, Saurabh Mehta, Hande Küçük-McGinty, John Paul Turner, Dusica Vidovic, Michele Forlin, Amar Koleti, Dac-Trung Nguyen, Lars Juhl Jensen, Rajarshi Guha, Stephen L. Mathias, Oleg Ursu, Vasileios Stathias, Jianbin Duan, Nooshin Nabizadeh, Caty Chung, Christopher Mader, Ubbo Visser, Jeremy J. Yang, Cristian Bologa, Tudor I. Oprea, Stephan C. Schürer:
Drug target ontology to classify and integrate drug discovery data. J. Biomed. Semant. 8(1): 50:1-50:16 (2017) - [j13]Edison Ong, Jiangan Xie, Zhaohui Ni, Qingping Liu, Sirarat Sarntivijai, Yu Lin, Daniel J. Cooper, Raymond Terryn, Vasileios Stathias, Caty Chung, Stephan C. Schürer, Yongqun He:
Ontological representation, integration, and analysis of LINCS cell line cells and their cellular responses. BMC Bioinform. 18(S-17): 43-53 (2017) - [j12]Kathleen M. Jagodnik, Simon Koplev, Sherry L. Jenkins, Lucila Ohno-Machado, Benedict Paten, Stephan C. Schürer, Michel Dumontier, Ruben Verborgh, Alex Bui, Peipei Ping, Neil J. McKenna, Ravi K. Madduri, Ajay Pillai, Avi Ma'ayan:
Developing a framework for digital objects in the Big Data to Knowledge (BD2K) commons: Report from the Commons Framework Pilots workshop. J. Biomed. Informatics 71: 49-57 (2017) - [j11]Dac-Trung Nguyen, Stephen L. Mathias, Cristian Bologa, Søren Brunak, Nicolas F. Fernandez, Anna Gaulton, Anne Hersey, Jayme Holmes, Lars Juhl Jensen, Anneli Karlsson, Guixia Liu, Avi Ma'ayan, Geetha Mandava, Subramani Mani, Saurabh Mehta, John P. Overington, Juhee Patel, Andrew D. Rouillard, Stephan C. Schürer, Timothy Sheils, Anton Simeonov, Larry A. Sklar, Noel Southall, Oleg Ursu, Dusica Vidovic, Anna Waller, Jeremy J. Yang, Ajit Jadhav, Tudor I. Oprea, Rajarshi Guha:
Pharos: Collating protein information to shed light on the druggable genome. Nucleic Acids Res. 45(Database-Issue): D995-D1002 (2017) - [c9]Qiong Cheng, Oleg Ursu, Tudor I. Oprea, Stephan C. Schürer:
Learning reference-enriched approach towards large scale active ontology alignment and integration. BIBM 2017: 1658-1663 - [c8]Qiong Cheng, Felix A. Lopez, Celia Duran, Christopher Camarillo, Tudor I. Oprea, Stephan C. Schürer:
The ontology reference model for visual selectivity analysis in drug-target interactions. BIBM 2017: 2091-2097 - [c7]Shima Dastgheib, Trish Whetzel, Amrapali Zaveri, Cyrus Afrasiabi, Pedro Assis, Paul Avillach, Kathleen M. Jagodnik, Gabor Korodi, Marcin Pilarczyk, Jeff de Pons, Stephan C. Schürer, Raymond Terryn, Ruben Verborgh, Chunlei Wu, Michel Dumontier:
The SmartAPI Ecosystem for Making Web APIs FAIR. ISWC (Posters, Demos & Industry Tracks) 2017 - 2016
- [c6]Hande Küçük-McGinty, Saurabh Mehta, Yu Lin, Nooshin Nabizadeh, Vasileios Stathias, Dusica Vidovic, Amar Koleti, Christopher Mader, Jianbin Duan, Ubbo Visser, Stephan C. Schürer:
Building Concordant Ontologies for Drug Discovery. ICBO/BioCreative 2016 - [c5]Edison Ong, Jiangan Xie, Zhaohui Ni, Qingping Liu, Yu Lin, Vasileios Stathias, Caty Chung, Stephan C. Schürer, Yongqun He:
The Cell Line Ontology Integration and Analysis of the Knowledge of LINCS Cell Lines. ICBO/BioCreative 2016 - 2015
- [j10]E. A. Howe, Andrea de Souza, David L. Lahr, S. Chatwin, Philip Montgomery, B. R. Alexander, Dac-Trung Nguyen, Yasel Cruz, D. A. Stonich, G. Walzer, J. T. Rose, Shaita C. Picard, Zihan Liu, Jamie N. Rose, X. Xiang, Jacob K. Asiedu, D. Durkin, J. Levine, J. J. Yang, Stephan C. Schürer, John C. Braisted, Noel Southall, Mark R. Southern, T. D. Y. Chung, Steve Brudz, C. Tanega, Stuart L. Schreiber, Joshua A. Bittker, Rajarshi Guha, Paul A. Clemons:
BioAssay Research Database (BARD): chemical biology and probe-development enabled by structured metadata and result types. Nucleic Acids Res. 43(Database-Issue): 1163-1170 (2015) - 2014
- [j9]Sirarat Sarntivijai, Yu Lin, Zuoshuang Xiang, Terrence F. Meehan, Alexander D. Diehl, Uma D. Vempati, Stephan C. Schürer, Chao Pang, James Malone, Helen E. Parkinson, Yue Liu, Terue Takatsuki, Kaoru Saijo, Hiroshi Masuya, Yukio Nakamura, Matthew H. Brush, Melissa A. Haendel, Jie Zheng, Christian J. Stoeckert Jr., Bjoern Peters, Christopher J. Mungall, Thomas E. Carey, David J. States, Brian D. Athey, Yongqun He:
CLO: The cell line ontology. J. Biomed. Semant. 5: 37 (2014) - [j8]Saminda Abeyruwan, Uma D. Vempati, Hande Küçük-McGinty, Ubbo Visser, Amar Koleti, Ahsan Mir, Kunie Sakurai, Caty Chung, Joshua A. Bittker, Paul A. Clemons, Steve Brudz, Anosha Siripala, Arturo J. Morales, Martin Romacker, David Twomey, Svetlana Bureeva, Vance P. Lemmon, Stephan C. Schürer:
Evolving BioAssay Ontology (BAO): modularization, integration and applications. J. Biomed. Semant. 5(S-1): S5 (2014) - 2013
- [j7]Magdalena Przydzial, Barun Bhhatarai, Amar Koleti, Uma Vempati, Stephan C. Schürer:
GPCR ontology: development and application of a G protein-coupled receptor pharmacology knowledge framework. Bioinform. 29(24): 3211-3219 (2013) - [j6]Stephan C. Schürer, Steven M. Muskal:
Kinome-wide Activity Modeling from Diverse Public High-Quality Data Sets. J. Chem. Inf. Model. 53(1): 27-38 (2013) - [c4]Saminda Abeyruwan, Ubbo Visser, Vance P. Lemmon, Stephan C. Schürer:
PrOntoLearn: Unsupervised Lexico-Semantic Ontology Generation Using Probabilistic Methods. URSW (LNCS Vol.) 2013: 217-236 - 2012
- [j5]Dusica Vidovic, Steven M. Muskal, Stephan C. Schürer:
Novel Kinase Inhibitors by Reshuffling Ligand Functionalities Across the Human Kinome. J. Chem. Inf. Model. 52(12): 3107-3115 (2012) - 2011
- [j4]Ubbo Visser, Saminda Abeyruwan, Uma Vempati, Robin P. Smith, Vance P. Lemmon, Stephan C. Schürer:
BioAssay Ontology (BAO): A Semantic Description of Bioassays and High-Throughput Screening Results. BMC Bioinform. 12: 257 (2011) - [j3]Dusica Vidovic, Yuli Xie, Alison Rinderspacher, Shi-Xian Deng, Donald W. Landry, Caty Chung, Deborah H. Smith, Lutz Tautz, Stephan C. Schürer:
Distinct functional and conformational states of the human lymphoid tyrosine phosphatase catalytic domain can be targeted by choice of the inhibitor chemotype. J. Comput. Aided Mol. Des. 25(9): 873-883 (2011) - [c3]Sirarat Sarntivijai, Zuoshuang Xiang, Terrence F. Meehan, Alexander D. Diehl, Uma Vempati, Stephan C. Schürer, Chao Pang, James Malone, Helen E. Parkinson, Brian D. Athey, Yongqun He:
Cell Line Ontology: Redesigning the Cell Line Knowledgebase to Aid Integrative Translational Informatics. ICBO 2011 - [c2]Uma Vempati, Ubbo Visser, Saminda Abeyruwan, Kunie Sakurai, Magdalena Przydzial, Caty Chung, Robin P. Smith, Amar Koleti, Christopher Mader, Vance P. Lemmon, Stephan C. Schürer:
Bioassay Ontology to Describe High-Throughput Screening Assays and their Results. ICBO 2011 - 2010
- [c1]Saminda Abeyruwan, Ubbo Visser, Vance P. Lemmon, Stephan C. Schürer:
PrOntoLearn: Unsupervised Lexico-Semantic Ontology Generation using Probabilistic Methods. URSW 2010: 25-36
2000 – 2009
- 2008
- [j2]Rajarshi Guha, Stephan C. Schürer:
Utilizing high throughput screening data for predictive toxicology models: protocols and application to MLSCN assays. J. Comput. Aided Mol. Des. 22(6-7): 367-384 (2008) - 2005
- [j1]Stephan C. Schürer, Prashant Tyagi, Steven M. Muskal:
Prospective Exploration of Synthetically Feasible, Medicinally Relevant Chemical Space. J. Chem. Inf. Model. 45(2): 239-248 (2005)
Coauthor Index
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