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ORCIDShahira Abousamra
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2020 – today
- 2024
[c15]Mahmudul Hasan
, Ariadna Kim Silva, Shahira Abousamra, Shao-Jun Tang, Prateek Prasanna, Joel H. Saltz, Kevin Gardner, Chao Chen, Alisa Yurovsky:
New Spatial Phenotypes from Imaging Uncover Survival Differences for Breast Cancer Patients. BCB 2024: 17:1-17:12- [c14]Juyoung Yun, Shahira Abousamra, Chen Li, Rajarsi Gupta, Tahsin M. Kurç, Dimitris Samaras, Alison L. Van Dyke, Joel H. Saltz, Chao Chen:
Uncertainty Estimation for Tumor Prediction with Unlabeled Data. CVPR Workshops 2024: 6946-6954 - [c13]Meilong Xu, Xiaoling Hu, Saumya Gupta, Shahira Abousamra, Chao Chen:
Semi-supervised Segmentation of Histopathology Images with Noise-Aware Topological Consistency. ECCV (78) 2024: 271-289 - [c12]Wentao Huang, Xiaoling Hu, Shahira Abousamra, Prateek Prasanna, Chao Chen:
Hard Negative Sample Mining for Whole Slide Image Classification. MICCAI (4) 2024: 144-154 - [c11]Mahmudul Hasan, Xiaoling Hu, Shahira Abousamra, Prateek Prasanna, Joel H. Saltz, Chao Chen:
Semi-supervised Contrastive VAE for Disentanglement of Digital Pathology Images. MICCAI (4) 2024: 459-469 - [c10]Chen Li, Xiaoling Hu, Shahira Abousamra, Meilong Xu, Chao Chen:
Spatial Diffusion for Cell Layout Generation. MICCAI (4) 2024: 481-491 - [i17]Chen Li, Xiaoling Hu, Shahira Abousamra, Meilong Xu, Chao Chen:
Spatial Diffusion for Cell Layout Generation. CoRR abs/2409.03106 (2024) - [i16]Mahmudul Hasan, Xiaoling Hu, Shahira Abousamra, Prateek Prasanna, Joel H. Saltz, Chao Chen:
Semi-Supervised Contrastive VAE for Disentanglement of Digital Pathology Images. CoRR abs/2410.02012 (2024) - [i15]Wentao Huang, Xiaoling Hu, Shahira Abousamra, Prateek Prasanna, Chao Chen:
Hard Negative Sample Mining for Whole Slide Image Classification. CoRR abs/2410.02212 (2024) - [i14]Wentao Huang, Meilong Xu, Xiaoling Hu, Shahira Abousamra, Aniruddha Ganguly, Saarthak Kapse, Alisa Yurovsky, Prateek Prasanna, Tahsin M. Kurç, Joel H. Saltz, Michael L. Miller, Chao Chen:
RankByGene: Gene-Guided Histopathology Representation Learning Through Cross-Modal Ranking Consistency. CoRR abs/2411.15076 (2024) - [i13]Meilong Xu, Saumya Gupta, Xiaoling Hu, Chen Li, Shahira Abousamra, Dimitris Samaras, Prateek Prasanna, Chao Chen:
TopoCellGen: Generating Histopathology Cell Topology with a Diffusion Model. CoRR abs/2412.06011 (2024) - 2023
- [j1]Jakub R. Kaczmarzyk, Rajarsi Gupta, Tahsin M. Kurç, Shahira Abousamra, Joel H. Saltz, Peter K. Koo:
ChampKit: A framework for rapid evaluation of deep neural networks for patch-based histopathology classification. Comput. Methods Programs Biomed. 239: 107631 (2023) - [c9]Shahira Abousamra, Rajarsi Gupta, Tahsin M. Kurç, Dimitris Samaras, Joel H. Saltz, Chao Chen:
Topology-Guided Multi-Class Cell Context Generation for Digital Pathology. CVPR 2023: 3323-3333 - [c8]Chen Li, Xiaoling Hu, Shahira Abousamra, Chao Chen:
Calibrating Uncertainty for Semi-Supervised Crowd Counting. ICCV 2023: 16685-16695 - [c7]Shahira Abousamra, Danielle Fassler, Jiachen Yao, Rajarsi R. Gupta, Tahsin M. Kurç, Luisa F. Escobar-Hoyos, Dimitris Samaras, Kenneth Shroyer, Joel H. Saltz, Chao Chen:
Unsupervised Stain Decomposition via Inversion Regulation for Multiplex Immunohistochemistry Images. MIDL 2023: 74-94 - [i12]Shahira Abousamra, Rajarsi Gupta, Tahsin M. Kurç, Dimitris Samaras, Joel H. Saltz, Chao Chen:
Topology-Guided Multi-Class Cell Context Generation for Digital Pathology. CoRR abs/2304.02255 (2023) - [i11]Chen Li, Xiaoling Hu, Shahira Abousamra, Chao Chen:
Calibrating Uncertainty for Semi-Supervised Crowd Counting. CoRR abs/2308.09887 (2023) - [i10]Meilong Xu, Xiaoling Hu, Saumya Gupta, Shahira Abousamra, Chao Chen:
TopoSemiSeg: Enforcing Topological Consistency for Semi-Supervised Segmentation of Histopathology Images. CoRR abs/2311.16447 (2023) - 2022
- [i9]Ujjwal Baid, Sarthak Pati, Tahsin M. Kurç, Rajarsi Gupta, Erich Bremer, Shahira Abousamra, Siddhesh P. Thakur, Joel H. Saltz, Spyridon Bakas:
Federated Learning for the Classification of Tumor Infiltrating Lymphocytes. CoRR abs/2203.16622 (2022) - [i8]Mahmudul Hasan, Jakub R. Kaczmarzyk, David Paredes, Lyanne Oblein, Jaymie Oentoro, Shahira Abousamra, Michael Horowitz, Dimitris Samaras, Chao Chen, Tahsin M. Kurç, Kenneth R. Shroyer, Joel H. Saltz:
A Novel Framework for Characterization of Tumor-Immune Spatial Relationships in Tumor Microenvironment. CoRR abs/2204.12283 (2022) - [i7]Jakub R. Kaczmarzyk, Tahsin M. Kurç, Shahira Abousamra, Rajarsi Gupta, Joel H. Saltz, Peter K. Koo:
Evaluating histopathology transfer learning with ChampKit. CoRR abs/2206.06862 (2022) - 2021
- [c6]Shahira Abousamra, Minh Hoai, Dimitris Samaras, Chao Chen:
Localization in the Crowd with Topological Constraints. AAAI 2021: 872-881 - [c5]Shahira Abousamra, David Belinsky, John S. Van Arnam, Felicia Allard, Eric Yee, Rajarsi Gupta, Tahsin M. Kurç, Dimitris Samaras, Joel H. Saltz, Chao Chen:
Multi-Class Cell Detection Using Spatial Context Representation. ICCV 2021: 3985-3994 - [i6]Shahira Abousamra, David Belinsky, John S. Van Arnam, Felicia Allard, Eric Yee, Rajarsi Gupta, Tahsin M. Kurç, Dimitris Samaras, Joel H. Saltz, Chao Chen:
Multi-Class Cell Detection Using Spatial Context Representation. CoRR abs/2110.04886 (2021) - 2020
- [c4]Shahira Abousamra, Danielle Fassler, Le Hou, Yuwei Zhang, Rajarsi Gupta, Tahsin M. Kurç, Luisa F. Escobar-Hoyos, Dimitris Samaras, Beatrice Knudson, Kenneth Shroyer, Joel H. Saltz, Chao Chen:
Weakly-Supervised Deep Stain Decomposition for Multiplex IHC Images. ISBI 2020: 481-485 - [i5]Shahira Abousamra, Minh Hoai, Dimitris Samaras, Chao Chen:
Localization in the Crowd with Topological Constraints. CoRR abs/2012.12482 (2020)
2010 – 2019
- 2019
- [c3]Robert M. Patton, Shahira Abousamra, Dimitris Samaras, Joel H. Saltz, J. Travis Johnston, Steven R. Young, Catherine D. Schuman, Thomas E. Potok, Derek C. Rose, Seung-Hwan Lim, Junghoon Chae, Le Hou:
Exascale Deep Learning to Accelerate Cancer Research. IEEE BigData 2019: 1488-1496 - [c2]Tahsin M. Kurç, Ashish Sharma, Rajarsi Gupta, Le Hou, Han Le, Shahira Abousamra, Erich Bremer, Ryan Birmingham, Tammy Diprima, Nan Li, Feiqiao Wang, Joseph Balsamo, Whitney Bremer, Dimitris Samaras, Joel H. Saltz:
From Whole Slide Tissues to Knowledge: Mapping Sub-cellular Morphology of Cancer. BrainLes@MICCAI (2) 2019: 371-379 - [i4]Maozheng Zhao, Le Hou, Han Le, Dimitris Samaras, Nebojsa Jojic, Danielle Fassler, Tahsin M. Kurç, Rajarsi R. Gupta, Kolya Malkin, Shahira Abousamra, Kenneth Shroyer, Joel H. Saltz:
Label Super Resolution with Inter-Instance Loss. CoRR abs/1904.04429 (2019) - [i3]Han Le, Rajarsi R. Gupta, Le Hou, Shahira Abousamra, Danielle Fassler, Tahsin M. Kurç, Dimitris Samaras, Rebecca Batiste, Tianhao Zhao, Alison L. Van Dyke, Ashish Sharma, Erich Bremer, Jonas S. Almeida, Joel H. Saltz:
Utilizing Automated Breast Cancer Detection to Identify Spatial Distributions of Tumor Infiltrating Lymphocytes in Invasive Breast Cancer. CoRR abs/1905.10841 (2019) - [i2]Shahira Abousamra, Le Hou, Rajarsi R. Gupta, Chao Chen, Dimitris Samaras, Tahsin M. Kurç, Rebecca Batiste, Tianhao Zhao, Kenneth Shroyer, Joel H. Saltz:
Learning from Thresholds: Fully Automated Classification of Tumor Infiltrating Lymphocytes for Multiple Cancer Types. CoRR abs/1907.03960 (2019) - [i1]Robert M. Patton, J. Travis Johnston, Steven R. Young, Catherine D. Schuman, Thomas E. Potok, Derek C. Rose, Seung-Hwan Lim, Junghoon Chae, Le Hou, Shahira Abousamra, Dimitris Samaras, Joel H. Saltz:
Exascale Deep Learning to Accelerate Cancer Research. CoRR abs/1909.12291 (2019) - 2018
- [c1]Shahira Abousamra, Shai Adar, Natalie Elia, Roy Shilkrot:
Localization and Tracking in 4D Fluorescence Microscopy Imagery. CVPR Workshops 2018: 2290-2298
Coauthor Index
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