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ORCIDSoftwareX, Volume 12
Volume 12, July 2020
- Guus Rongen, Cornelis Marcel Pieter 't Hart, Georgios Leontaris, Oswaldo Morales-Nápoles
:
Update (1.2) to ANDURIL and ANDURYL: Performance improvements and a graphical user interface. 100497 - Rebecca W. Loraamm, Joni A. Downs, James Anderson, David S. Lamb:
PySTPrism: Tools for voxel-based space-time prisms. 100499 - Sahar Hojati, Rahele Kafieh, Parisa Fardafshari, Masoud Aghsaei Fard, Hatef Fouladi:
A MATLAB package for automatic extraction of flow index in OCT-A images by intelligent vessel manipulation. 100510 - Luca Ardito, Marco Torchiano, Riccardo Coppola, Giulio Antoniol:
PowTrAn: An R Package for power trace analysis. 100512 - Giuseppe Futia, Antonio Vetrò, Juan Carlos De Martin:
SeMi: A SEmantic Modeling machIne to build Knowledge Graphs with graph neural networks. 100516 - Panagiotis E. Hadjidoukas, Andrea Bartezzaghi, Florian Scheidegger, Roxana Istrate, Costas Bekas, A. Cristiano I. Malossi:
torcpy: Supporting task parallelism in Python. 100517 - Azim Ahmadzadeh, Kankana Sinha, Berkay Aydin, Rafal A. Angryk:
MVTS-Data Toolkit: A Python package for preprocessing multivariate time series data. 100518 - Paulo Paneque Galuzio, Emerson Hochsteiner de Vasconcelos Segundo, Leandro dos Santos Coelho, Viviana Cocco Mariani:
MOBOpt - multi-objective Bayesian optimization. 100520 - Marco Sampaio Rodrigues, Rui M. S. Pereira, Mikhail I. Vasilevskiy, Joel Borges, Filipe Vaz:
NANOPTICS: In-depth analysis of NANomaterials for OPTICal localized surface plasmon resonance Sensing. 100522 - Crispin H. V. Cooper, Alain J. F. Chiaradia:
sDNA: 3-d spatial network analysis for GIS, CAD, Command Line & Python. 100525 - Yifei Zhang, Jia Cao:
GSimPy: A Python package for measuring group similarity. 100526 - Oleksiy V. Penkov, Igor A. Kopylets, Mahdi Khadem, Tianzuo Qin:
X-Ray Calc: A software for the simulation of X-ray reflectivity. 100528 - Johannes Keller, Volker Rath, Johanna Bruckmann, Darius Mottaghy, Christoph Clauser, Andreas Wolf, Ralf Seidler, H. Martin Bücker, Norbert Klitzsch:
SHEMAT-Suite: An open-source code for simulating flow, heat and species transport in porous media. 100533 - João Rafael Almeida, Armando J. Pinho, José Luís Oliveira, Olga Fajarda, Diogo Pratas:
GTO: A toolkit to unify pipelines in genomic and proteomic research. 100535 - Luís Mendes, Alexandre Bernardino, Rui M. L. Ferreira:
piv-image-generator: An image generating software package for planar PIV and Optical Flow benchmarking. 100537 - Cemre Cubukcuoglu, Pirouz Nourian, I. Sevil Sariyildiz, Mehmet Fatih Tasgetiren:
A discrete event simulation procedure for validating programs of requirements: The case of hospital space planning. 100539 - Mokbel Karam, James C. Sutherland, Tony Saad:
PyModPDE: A python software for modified equation analysis. 100541 - Daniel Leal Fagundes, Jair Trapé Goulart:
ContHeart: Software for monitoring isolated cardiomyocyte shortening. 100547 - Dafne E. van Kuppevelt, Christiaan Meijer, Florian Huber, A. van der Ploeg, S. Georgievska, Vincent T. van Hees:
Mcfly: Automated deep learning on time series. 100548 - Alessio Sclocco, Stijn Heldens, Ben van Werkhoven:
AMBER: A real-time pipeline for the detection of single pulse astronomical transients. 100549 - Paul Bartholomew, Georgios Deskos, Ricardo A. S. Frantz, Felipe N. Schuch, Eric Lamballais, Sylvain Laizet:
Xcompact3D: An open-source framework for solving turbulence problems on a Cartesian mesh. 100550 - Rudolf Ferenc, Tamás Viszkok, Tamás Aladics, Judit Jász, Péter Hegedüs:
Deep-water framework: The Swiss army knife of humans working with machine learning models. 100551 - Murat Çaliskan, Berk Anbaroglu:
Geo-MST: A geographical minimum spanning tree plugin for QGIS. 100553 - Amarin Siripanich, Taha Hossein Rashidi:
Dymium: A modular microsimulation modelling framework for integrated urban modelling. 100555 - Kyriakos Panagiotidis, Naoum Tsolakis, Alexander Tsigkas:
HC-4-PM: A heterarchical communication framework for project management. 100557 - Michael G. Leeming, Andrew P. Isaac, Luke Zappia, Richard A. J. O'hair, William A. Donald, Bernard J. Pope:
HiTIME: An efficient model-selection approach for the detection of unknown drug metabolites in LC-MS data. 100559 - William F. Godoy, Norbert Podhorszki, Ruonan Wang, Chuck Atkins, Greg Eisenhauer, Junmin Gu, Philip E. Davis, Jong Choi, Kai Germaschewski, Kevin A. Huck, Axel Huebl, Mark Kim, James Kress, Tahsin M. Kurç, Qing Liu, Jeremy Logan, Kshitij Mehta, George Ostrouchov, Manish Parashar, Franz Poeschel, David Pugmire, Eric Suchyta, Keichi Takahashi, Nick Thompson, Seiji Tsutsumi, Lipeng Wan, Matthew Wolf, Kesheng Wu, Scott Klasky:
ADIOS 2: The Adaptable Input Output System. A framework for high-performance data management. 100561 - Federico Tartarini, Stefano Schiavon, Toby Cheung, Tyler Hoyt:
CBE Thermal Comfort Tool: Online tool for thermal comfort calculations and visualizations. 100563 - João Bispo, João M. P. Cardoso:
Clava: C/C++ source-to-source compilation using LARA. 100565 - Cristian Jimenez, Iván Amaya, Rodrigo Correa:
SpinUpFlowDescriptor: A MATLAB toolbox for ferrofluids materials under moderate and high amplitude and frequency of magnetic rotating fields in a spin-up geometry. 100567 - Michele Castelluzzo, Alessio Perinelli, Simone Detassis, Michela Alessandra Denti, Leonardo Ricci:
MiRNA-QC-and-Diagnosis: An R package for diagnosis based on MiRNA expression. 100569 - Orod Razeghi, José Alonso Solís-Lemus, Angela W. C. Lee, Rashed Karim, Cesare Corrado, Caroline H. Roney, Adelaide de Vecchi, Steven A. Niederer:
CemrgApp: An interactive medical imaging application with image processing, computer vision, and machine learning toolkits for cardiovascular research. 100570 - Stefan Dähling, Lukas Razik, Antonello Monti:
OWL2Go: Auto-generation of Go data models for OWL ontologies with integrated serialization and deserialization functionality. 100571 - Vasyl Skorych, Maksym Dosta, Stefan Heinrich:
Dyssol - An open-source flowsheet simulation framework for particulate materials. 100572 - Eric Medvet, Alberto Bartoli, Andrea De Lorenzo, Stefano Seriani:
2D-VSR-Sim: A simulation tool for the optimization of 2-D voxel-based soft robots. 100573 - Iván González Torre, Richard J. Heck, A. M. Tarquis:
MULTIFRAC: An ImageJ plugin for multiscale characterization of 2D and 3D stack images. 100574 - James B. Scoggins, Vincent Leroy, Georgios Bellas-Chatzigeorgis, Bruno Dias, Thierry E. Magin:
Mutation++: MUlticomponent Thermodynamic And Transport properties for IONized gases in C++. 100575 - Michael Adams, Andreas V. Hense, Arthur H. M. ter Hofstede:
YAWL: An open source Business Process Management System from science for science. 100576 - Leandro Lima Rasmussen:
UnBlocksgen: A Python library for 3D rock mass generation and analysis. 100577 - Federico Tartarini, Stefano Schiavon:
pythermalcomfort: A Python package for thermal comfort research. 100578 - Bruno Blais, Lucka Barbeau, Valérie Bibeau, Simon Gauvin, Toni El Geitani, Shahab Golshan, Rajeshwari Kamble, Ghazaleh Mirakhori, Jamal Chaouki:
Lethe: An open-source parallel high-order adaptative CFD solver for incompressible flows. 100579 - Xavier Alejandro Flores Cabezas, Martha Cecilia Paredes Paredes, Luis Felipe Urquiza-Aguiar, Diego Javier Reinoso Chisaguano:
PhySim-11p: Simulation model for IEEE 802.11p physical layer in MATLAB. 100580 - Yoann Ladroit, Pablo C. Escobar-Flores, Alexandre C. G. Schimel, Richard L. O'Driscoll:
ESP3: An open-source software for the quantitative processing of hydro-acoustic data. 100581 - Brittany L. Bruder, Katherine L. Brodie:
CIRN Quantitative Coastal Imaging Toolbox. 100582 - Sebastian Semper, Michael Döbereiner, Sankalp Pawar, Markus H. Landmann, Giovanni Del Galdo:
eadf: Representation of far-field antenna responses in Python. 100583 - Matthew P. Conlin, Peter N. Adams, Benjamin Wilkinson, Gregory Dusek, Margaret L. Palmsten, Jenna A. Brown:
SurfRCaT: A tool for remote calibration of pre-existing coastal cameras to enable their use as quantitative coastal monitoring tools. 100584 - Hadar Ben-Gida, Roi Gurka, Alex Liberzon:
OpenPIV-MATLAB - An open-source software for particle image velocimetry; test case: Birds' aerodynamics. 100585 - Sebastian Muraru, Jorge S. Burns, Mariana Ionita:
GOPY: A tool for building 2D graphene-based computational models. 100586 - J. Degallaix:
OSCAR: A MATLAB based package to simulate realistic optical cavities. 100587 - Dominik Paprotny, Oswaldo Morales-Nápoles, Daniël T. H. Worm, Elisa Ragno:
BANSHEE-A MATLAB toolbox for Non-Parametric Bayesian Networks. 100588 - Domenico Suriano:
SentinAir system software: A flexible tool for data acquisition from heterogeneous sensors and devices. 100589 - Alexandre Decan, Tom Mens:
Sismic - A Python library for statechart execution and testing. 100590 - Lars Hertel, Julian Collado, Peter J. Sadowski, Jordan Ott, Pierre Baldi:
Sherpa: Robust hyperparameter optimization for machine learning. 100591 - Vítor Silva, Vinícius Campos, Thaylon Guedes, José J. Camata, Daniel de Oliveira, Alvaro L. G. A. Coutinho, Patrick Valduriez, Marta Mattoso:
DfAnalyzer: Runtime dataflow analysis tool for Computational Science and Engineering applications. 100592 - Andrzej Daniluk:
rheed++: A C++ framework to simulation of RHEED intensity oscillations during the growth of thin epitaxial films. 100593 - Sofya Kulikova:
StimVis: A tool for interactive computation of the TMS-induced effects over tractography data. 100594 - Kenneth A. Hart, Julian J. Rimoli:
MicroStructPy: A statistical microstructure mesh generator in Python. 100595 - Stefano Bonduà, Villiam Bortolotti:
TOUGH2Viewer 2.0: A multiplatform tool for fully 3D Voronoi TOUGH grids. 100596 - Adrian Linsel, Kristian Bär, Joshua Haas, Jens Hornung, Matthias D. Greb, Matthias Hinderer:
GeoReVi: A knowledge discovery and data management tool for subsurface characterization. 100597 - Manish Anand, Jed A. Diekfuss, Alexis B. Slutsky-Ganesh, Scott Bonnette, Dustin R. Grooms, Gregory D. Myer:
Graphical interface for automated management of motion artifact within fMRI acquisitions: INFOBAR. 100598 - Simone Cirani, Marco Picone, Luca Veltri, Luca Zaccomer, Francesco Zanichelli:
ZWT: A new cross-platform graphical interface framework for Java applications. 100599 - Jakob Lass, Henrik Jacobsen, Daniel G. Mazzone, Kim Lefmann:
MJOLNIR: A software package for multiplexing neutron spectrometers. 100600 - Juan C. Martínez-Franco, Edgar Céspedes-Sabogal, David Álvarez-Martínez:
PackageCargo: A decision support tool for the container loading problem with stability. 100601 - Julien Loiseau, Hyun Lim, Mark Alexander Kaltenborn, Oleg Korobkin, Christopher M. Mauney, Irina Sagert, Wesley P. Even, Benjamin K. Bergen:
FleCSPH: The next generation FleCSIble parallel computational infrastructure for smoothed particle hydrodynamics. 100602 - German A. Sinuco-Leon:
OPENMMF: A library for multimode driven quantum systems. 100603 - Guilherme Lindner, Yann Devaux, Sanja Miskovic:
VortexFitting: A post-processing fluid mechanics tool for vortex identification. 100604 - L. van Kessel, C. W. Hagen:
Nebula: Monte Carlo simulator of electron-matter interaction. 100605 - João Victor da Silva Guerra, Helder Veras Ribeiro filho, Leandro Oliveira Bortot, Rodrigo Vargas Honorato, José Geraldo de Carvalho Pereira, Paulo Sérgio Lopes-de-Oliveira:
ParKVFinder: A thread-level parallel approach in biomolecular cavity detection. 100606 - Ahmed Elkady, Dimitrios G. Lignos:
EaRL - Software for Earthquake Risk, Loss and Lifecycle Analysis. 100607 - Gijs van den Oord, Fredrik Jansson, F. Inti Pelupessy, Maria Chertova, Johanna H. Grönqvist, Pier Siebesma, Daan Crommelin:
A Python interface to the Dutch Atmospheric Large-Eddy Simulation. 100608 - Nan-Hung Hsieh, Brad Reisfeld, Weihsueh A. Chiu:
pksensi: An R package to apply global sensitivity analysis in physiologically based kinetic modeling. 100609 - Sascha Bub, Thorsten Schad, Zhenglei Gao:
XDrift - An R package to simulate spatially explicit pesticide spray-drift exposure of non-target-species habitats at landscape scales. 100610 - Jan Wilhelm Gärtner, Andreas Kronenburg, Tobias Martin:
Efficient WENO library for OpenFOAM. 100611 - Lia Morra, Francesco Manigrasso, Fabrizio Lamberti:
SoccER: Computer graphics meets sports analytics for soccer event recognition. 100612 - Daniel D. Brown, Philip Jones, Samuel Rowlinson, Sean Leavey, Anna C. Green, Daniel Töyrä, Andreas Freise:
Pykat: Python package for modelling precision optical interferometers. 100613 - Claudio Lucchese, Cristina Ioana Muntean, Franco Maria Nardini, Raffaele Perego, Salvatore Trani:
RankEval: Evaluation and investigation of ranking models. 100614 - Spencer H. Bryngelson, Tim Colonius, Rodney O. Fox:
QBMMlib: A library of quadrature-based moment methods. 100615 - Carlos Argáez, Peter Giesl, Sigurdur Freyr Hafstein:
Update (2.0) to LyapXool: Eigenpairs and new classification methods. 100616 - Dovydas Joksas, Adnan Mehonic:
badcrossbar: A Python tool for computing and plotting currents and voltages in passive crossbar arrays. 100617 - Maksym Dosta, Vasyl Skorych:
MUSEN: An open-source framework for GPU-accelerated DEM simulations. 100618 - Florent Robinet, Nicolas Arnaud, Nicolas Leroy, Andrew Lundgren, Duncan Macleod, Jessica McIver:
Omicron: A tool to characterize transient noise in gravitational-wave detectors. 100620 - Sergio A. Barcellos Lins, Boris Bremmers, Giovanni E. Gigante:
XISMuS - X-ray fluorescence imaging software for multiple samples. 100621 - Davide Ninni, Miguel A. Mendez:
MODULO: A software for Multiscale Proper Orthogonal Decomposition of data. 100622 - Luka Cehovin Zajc:
A modular toolkit for visual tracking performance evaluation. 100623 - Nathan Fox, Tom August, Francesca Mancini, Katherine E. Parks, Felix Eigenbrod, James M. Bullock, Louis Sutter, Laura J. Graham:
"photosearcher" package in R: An accessible and reproducible method for harvesting large datasets from Flickr. 100624 - Christiaan Meijer, Meiert W. Grootes, Zsófia Koma, Yifat Dzigan, R. Gonçalves, B. Andela, G. van den Oord, Elena Ranguelova, Nicolas Renaud, W. Daniel Kissling:
Laserchicken - A tool for distributed feature calculation from massive LiDAR point cloud datasets. 100626 - Jorge M. Cruz-Duarte, Iván Amaya, José Carlos Ortiz-Bayliss, Hugo Terashima-Marín, Yong Shi:
CUSTOMHyS: Customising Optimisation Metaheuristics via Hyper-heuristic Search. 100628 - R. Siddharth, Gnanasekaran Aghila:
RandPro- A practical implementation of random projection-based feature extraction for high dimensional multivariate data analysis in R. 100629 - Kamila Zdybal, Elizabeth Armstrong, Alessandro Parente, James C. Sutherland:
PCAfold: Python software to generate, analyze and improve PCA-derived low-dimensional manifolds. 100630 - Ahmed Sleem, Mohamed Abdel-Baset, Ibrahim M. El-Henawy:
PyIVNS: A python based tool for Interval-valued neutrosophic operations and normalization. 100632 - Stefano Dalla Palma, Dario Di Nucci, Damian A. Tamburri:
AnsibleMetrics: A Python library for measuring Infrastructure-as-Code blueprints in Ansible. 100633 - Karl Wette:
SWIGLAL: Python and Octave interfaces to the LALSuite gravitational-wave data analysis libraries. 100634 - Luca Ardito, Luca Barbato, Marco Castelluccio, Riccardo Coppola, Calixte Denizet, Sylvestre Ledru, Michele Valsesia:
rust-code-analysis: A Rust library to analyze and extract maintainability information from source codes. 100635 - Gregorio Mariggiò, Sebastiano Fichera, Mauro Corrado, Giulio Ventura:
EQP - A 2D/3D library for integration of polynomials times step function. 100636 - Giorgio Luciano, Kristian Hovde Liland, M. Marsotto, Roman Svoboda, Serena Berretta:
takos: An R package for thermal analysis calculations. 100637 - Editorial Board. 100649
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