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2020 – today
- 2020
[j8]Michael G. Leeming
, Andrew Paul Isaac, Luke Zappia, Richard A. J. O'hair, William A. Donald, Bernard J. Pope:
HiTIME: An efficient model-selection approach for the detection of unknown drug metabolites in LC-MS data. SoftwareX 12: 100559 (2020)
2010 – 2019
- 2017
- [i2]Rafael C. Jiménez, Mateusz Kuzak, Monther Alhamdoosh, Michelle Barker, Bérénice Batut, Mikael Borg, Salvador Capella-Gutiérrez, Neil P. Chue Hong, Martin Cook, Manuel Corpas, Madison Flannery, Leyla J. García, Josep Lluis Gelpí, Simon L. Gladman, Carole A. Goble, Montserrat González Ferreiro, Alejandra N. González-Beltrán, Philippa C. Griffin, Björn A. Grüning, Jonas Hagberg, Petr Holub, Rob W. W. Hooft, Jon C. Ison, Daniel S. Katz, Brane Leskosek, Federico López-Gómez, Luis J. Oliveira, David Mellor, Rowland Mosbergen, Nicola J. Mulder, Yasset Pérez-Riverol, Robert Pergl, Horst Pichler, Bernard J. Pope, Ferran Sanz, Maria Victoria Schneider, Victoria Stodden, Radoslaw Suchecki, Radka Svobodová Vareková, Harry-Anton Talvik, Ilian T. Todorov, Andrew E. Treloar, Sonika Tyagi, Maarten van Gompel, Daniel Vaughan, Allegra Via, Xiaochuan Wang, Nathan S. Watson-Haigh, Steve Crouch:
Four simple recommendations to encourage best practices in research software. F1000Research 6: 876- (2017) - [i1]Philippa C. Griffin, Jyoti Khadake, Kate S. LeMay, Suzanna E. Lewis, Sandra E. Orchard, Andrew Pask, Bernard J. Pope, Ute Roessner, Keith Russell, Torsten Seemann, Andrew E. Treloar, Sonika Tyagi, Jeffrey H. Christiansen, Saravanan Dayalan, Simon Gladman, Sandra B. Hangartner, Helen L. Hayden, William W. H. Ho, Gabriel Keeble-Gagnère, Pasi K. Korhonen, Peter Neish, Priscilla R. Prestes, Mark F. Richardson, Nathan S. Watson-Haigh, Kelly L. Wyres, Neil D. Young, Maria Victoria Schneider:
Best practice data life cycle approaches for the life sciences. F1000Research 6: 1618- (2017) - 2016
- [j7]Nicholas C. Wong, Bernard J. Pope, Ida L. Candiloro, Darren Korbie, Matt Trau, Stephen Q. Wong, Thomas Mikeska, Xinmin Zhang, Mark Pitman, Stefanie Eggers, Stephen R. Doyle, Alexander Dobrovic:
MethPat: a tool for the analysis and visualisation of complex methylation patterns obtained by massively parallel sequencing. BMC Bioinform. 17: 98 (2016) - [j6]Daniel J. Park, Roger Li, Edmund Lau, Peter Georgeson, Tu Nguyen-Dumont, Bernard J. Pope:
UNDR ROVER - a fast and accurate variant caller for targeted DNA sequencing. BMC Bioinform. 17: 165 (2016) - 2014
- [j5]Bernard J. Pope, Tu Nguyen-Dumont, Fleur Hammet, Daniel J. Park:
ROVER variant caller: read-pair overlap considerate variant-calling software applied to PCR-based massively parallel sequencing datasets. Source Code Biol. Medicine 9: 3 (2014) - [j4]Daniel J. Park, Tu Nguyen-Dumont, Sori Kang, Karin Verspoor, Bernard J. Pope:
Annokey: an annotation tool based on key term search of the NCBI Entrez Gene database. Source Code Biol. Medicine 9: 15 (2014) - 2013
- [j3]Bernard J. Pope, Tu Nguyen-Dumont, Fabrice Odefrey, Russell Bell, Sean V. Tavtigian, David E. Goldgar, Andrew Lonie, Melissa C. Southey, Daniel J. Park:
FAVR (Filtering and Annotation of Variants that are Rare): methods to facilitate the analysis of rare germline genetic variants from massively parallel sequencing datasets. BMC Bioinform. 14: 65 (2013) - 2012
- [j2]Simon P. Sadedin, Bernard J. Pope, Alicia Oshlack:
Bpipe: a tool for running and managing bioinformatics pipelines. Bioinform. 28(11): 1525-1526 (2012) - 2011
- [j1]Bernard J. Pope, Blake G. Fitch, Michael Pitman, John Jeremy Rice, Matthias Reumann:
Performance of Hybrid Programming Models for Multiscale Cardiac Simulations: Preparing for Petascale Computation. IEEE Trans. Biomed. Eng. 58(10): 2965-2969 (2011) - [c6]Bernard J. Pope, Blake G. Fitch, Michael C. Pitman, John Jeremy Rice, Matthias Reumann:
Petascale computation performance of lightweight multiscale cardiac models using hybrid programming models. EMBC 2011: 433-436
2000 – 2009
- 2007
- [c5]Simon Marlow, José Iborra, Bernard J. Pope, Andy Gill:
A lightweight interactive debugger for haskell. Haskell 2007: 13-24 - 2004
- [c4]Bernard J. Pope:
Declarative Debugging with Buddha. Advanced Functional Programming 2004: 273-308 - 2003
- [c3]Bernard J. Pope, Lee Naish:
A Program Transformation for Debugging Haskell 98. ACSC 2003: 227-236 - [c2]Bernard J. Pope, Lee Naish:
Practical aspects of declarative debugging in Haskell 98. PPDP 2003: 230-240 - 2001
- [c1]Bernard J. Pope, Lee Naish:
Specialisation of Higher-Order Functions for Debugging. WFLP 2001: 277-291
Coauthor Index
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