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ORCIDMichael M. Hoffman
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2020 – today
- 2023
[i6]Annika Reinke, Minu Tizabi, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A. Emre Kavur, Tim Rädsch, Carole H. Sudre, Laura Ación
, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Matthew B. Blaschko, Florian Büttner, M. Jorge Cardoso, Veronika Cheplygina, Jianxu Chen, Evangelia Christodoulou, Beth A. Cimini, Gary S. Collins, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Ben Glocker, Patrick Godau, Robert Haase, Daniel A. Hashimoto, Michael M. Hoffman, Merel Huisman, Fabian Isensee, Pierre Jannin, Charles E. Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Alan Karthikesalingam, Hannes Kenngott, Jens Kleesiek, Florian Kofler, Thijs Kooi, Annette Kopp-Schneider, Michal Kozubek, Anna Kreshuk, Tahsin M. Kurç, Bennett A. Landman, Geert Litjens, Amin Madani, Klaus H. Maier-Hein, Anne L. Martel, Peter Mattson, Erik Meijering, Bjoern H. Menze, Karel G. M. Moons, Henning Müller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Susanne M. Rafelski, Nasir M. Rajpoot, Mauricio Reyes, Michael A. Riegler, Nicola Rieke, Julio Saez-Rodriguez, Clara I. Sánchez, Shravya Shetty, Maarten van Smeden, Ronald M. Summers, Abdel A. Taha, Aleksei Tiulpin, Sotirios A. Tsaftaris, Ben Van Calster, Gaël Varoquaux, Manuel Wiesenfarth, Ziv R. Yaniv, Paul F. Jäger, Lena Maier-Hein:
Understanding metric-related pitfalls in image analysis validation. CoRR abs/2302.01790 (2023)- 2022
- [j11]Yi Nian Niu, Eric G. Roberts, Danielle Denisko, Michael M. Hoffman:
Assessing and assuring interoperability of a genomics file format. Bioinform. 38(13): 3327-3336 (2022) - [i5]Lena Maier-Hein, Annika Reinke, Evangelia Christodoulou, Ben Glocker, Patrick Godau, Fabian Isensee, Jens Kleesiek, Michal Kozubek, Mauricio Reyes, Michael A. Riegler, Manuel Wiesenfarth, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A. Emre Kavur, Tim Rädsch, Minu Dietlinde Tizabi, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Peter Bankhead, Arriel Benis, M. Jorge Cardoso, Veronika Cheplygina, Beth A. Cimini, Gary S. Collins, Keyvan Farahani, Bram van Ginneken, Daniel A. Hashimoto, Michael M. Hoffman, Merel Huisman, Pierre Jannin, Charles E. Kahn, Alexandros Karargyris, Alan Karthikesalingam, Hannes Kenngott, Annette Kopp-Schneider, Anna Kreshuk, Tahsin M. Kurç, Bennett A. Landman, Geert Litjens, Amin Madani, Klaus H. Maier-Hein, Anne L. Martel, Peter Mattson, Erik Meijering, Bjoern H. Menze, David Moher, Karel G. M. Moons, Henning Müller, Felix Nickel, Brennan Nichyporuk, Jens Petersen, Nasir M. Rajpoot, Nicola Rieke, Julio Saez-Rodriguez, Clarisa Sánchez Gutiérrez, Shravya Shetty, Maarten van Smeden, Carole H. Sudre, Ronald M. Summers, Abdel A. Taha, Sotirios A. Tsaftaris, Ben Van Calster, Gaël Varoquaux, Paul F. Jäger:
Metrics reloaded: Pitfalls and recommendations for image analysis validation. CoRR abs/2206.01653 (2022) - 2021
- [j10]Maxwell W. Libbrecht, Rachel C. W. Chan, Michael M. Hoffman:
Segmentation and genome annotation algorithms for identifying chromatin state and other genomic patterns. PLoS Comput. Biol. 17(10) (2021) - [i4]Maxwell W. Libbrecht, Rachel C. W. Chan, Michael M. Hoffman:
Segmentation and genome annotation algorithms. CoRR abs/2101.00688 (2021) - 2020
- [i3]Chang Cao, Davide Chicco, Michael M. Hoffman:
The MCC-F1 curve: a performance evaluation technique for binary classification. CoRR abs/2006.11278 (2020)
2010 – 2019
- 2019
- [j9]Marinka Zitnik, Francis Nguyen, Bo Wang, Jure Leskovec, Anna Goldenberg, Michael M. Hoffman:
Machine learning for integrating data in biology and medicine: Principles, practice, and opportunities. Inf. Fusion 50: 71-91 (2019) - [j8]Ankur Jai Sood, Coby Viner, Michael M. Hoffman:
DNAmod: the DNA modification database. J. Cheminformatics 11(1): 30:1-30:10 (2019) - 2018
- [j7]Mehran Karimzadeh, Michael M. Hoffman:
Top considerations for creating bioinformatics software documentation. Briefings Bioinform. 19(4): 693-699 (2018) - [j6]Rachel C. W. Chan, Maxwell W. Libbrecht, Eric G. Roberts, Jeffrey A. Bilmes, William Stafford Noble, Michael M. Hoffman:
Segway 2.0: Gaussian mixture models and minibatch training. Bioinform. 34(4): 669-671 (2018) - [i2]Marinka Zitnik, Francis Nguyen, Bo Wang, Jure Leskovec, Anna Goldenberg, Michael M. Hoffman:
Machine Learning for Integrating Data in Biology and Medicine: Principles, Practice, and Opportunities. CoRR abs/1807.00123 (2018) - 2017
- [d2]Rachel C. W. Chan, Maxwell W. Libbrecht, Eric G. Roberts, Jeffrey A. Bilmes, William Stafford Noble, Michael M. Hoffman:
Segway 2.0 Application Note Datasets. Zenodo, 2017
- [d1]Rachel C. W. Chan, Maxwell W. Libbrecht, Eric G. Roberts, Jeffrey A. Bilmes, William Stafford Noble, Michael M. Hoffman:
Segway 2.0 Application Note Scripts. Zenodo, 2017 - 2015
- [c2]Maxwell W. Libbrecht, Michael M. Hoffman, Jeff A. Bilmes, William Stafford Noble:
Entropic Graph-based Posterior Regularization. ICML 2015: 1992-2001 - [i1]Beate Franke, Jean-François Plante, Ribana Roscher, Annie Lee, Cathal Smyth, Armin Hatefi, Fuqi Chen, Einat Gil, Alexander G. Schwing, Alessandro Selvitella, Michael M. Hoffman, Roger B. Grosse, Dieter Hendricks, Nancy Reid:
Statistical Inference, Learning and Models in Big Data. CoRR abs/1509.02900 (2015) - 2014
- [j5]Joshua Wing Kei Ho, Youngsook L. Jung, Tao Liu, Burak Han Alver, Soohyun Lee, Kohta Ikegami, Kyung-Ah Sohn, Aki Minoda, Michael Y. Tolstorukov, Alex Appert, Stephen C. J. Parker, Tingting Gu, Anshul Kundaje, Nicole C. Riddle, Eric Bishop, Thea A. Egelhofer, Sheng'en Shawn Hu, Artyom A. Alekseyenko, Andreas Rechtsteiner, Dalal Asker, Jason A. Belsky, Sarah K. Bowman, Q. Brent Chen, Ron A.-J. Chen, Daniel S. Day, Yan Dong, Andrea C. Dose, Xikun Duan, Charles B. Epstein, Sevinc Ercan, Elise A. Feingold, Francesco Ferrari, Jacob M. Garrigues, Nils Gehlenborg, Peter J. Good, Psalm Haseley, Daniel He, Moritz Herrmann, Michael M. Hoffman, Tess E. Jeffers, Peter V. Kharchenko, Paulina Kolasinska-Zwierz, Chitra V. Kotwaliwale, Nischay Kumar, Sasha A. Langley, Erica Larschan, Isabel Latorre, Maxwell W. Libbrecht, Xueqiu Lin, Richard Park, Michael J. Pazin, Hoang N. Pham, Annette Plachetka, Bo Qin, Yuri B. Schwartz, Noam Shoresh, Przemyslaw Stempor, Anne Vielle, Chengyang Wang, Christina M. Whittle, Huiling Xue, Robert E. Kingston, Ju Han Kim, Bradley E. Bernstein, Abby F. Dernburg, Vincenzo Pirrotta, Mitzi I. Kuroda, William S. Noble, Thomas D. Tullius, Manolis Kellis, David M. MacAlpine, Susan Strome, Sarah C. R. Elgin, Xiaole Shirley Liu, Jason D. Lieb, Julie Ahringer, Gary H. Karpen, Peter J. Park:
Comparative analysis of metazoan chromatin organization Open. Nat. 512(7515): 449-452 (2014) - 2013
- [c1]Michael M. Hoffman, Orion J. Buske, Jie Wang, Zhiping Weng, Jeff A. Bilmes, William Stafford Noble:
Unsupervised pattern discovery in human chromatin structure through genomic segmentation. BCB 2013: 813 - 2011
- [j4]Orion J. Buske, Michael M. Hoffman, Nadia Ponts, Karine G. Le Roch, William Stafford Noble:
Exploratory analysis of genomic segmentations with Segtools. BMC Bioinform. 12: 415 (2011) - 2010
- [j3]Michael M. Hoffman, Orion J. Buske, William Stafford Noble:
The Genomedata format for storing large-scale functional genomics data. Bioinform. 26(11): 1458-1459 (2010) - [j2]Xiaoyu Chen, Michael M. Hoffman, Jeff A. Bilmes, Jay R. Hesselberth, William Stafford Noble:
A dynamic Bayesian network for identifying protein-binding footprints from single molecule-based sequencing data. Bioinform. 26(12): 334-342 (2010)
2000 – 2009
- 2004
- [j1]Michael M. Hoffman, Maksim A. Khrapov, J. Colin Cox, Jianchao Yao, Lingnan Tong, Andrew D. Ellington:
AANT: the Amino Aciduchleotide Interaction Database. Nucleic Acids Res. 32(Database-Issue): 174-181 (2004)
Coauthor Index
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