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ORCIDAlba Cristina Magalhaes Alves de Melo
Alba C. M. A. Melo – Alba de Melo
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2020 – today
- 2024
[j47]Aldo H. D. Mendes
, Michel J. F. Rosa, Marcelo Antonio Marotta, Aletéia P. F. Araújo, Alba C. M. A. Melo, Célia Ghedini Ralha:
MAS-Cloud+: A novel multi-agent architecture with reasoning models for resource management in multiple providers. Future Gener. Comput. Syst. 154: 16-34 (2024)- [j46]Emerson de Araujo Macedo, Alba C. M. A. Melo:
Adaptive patch grid strategy for parallel protein folding using atomic burials with NAMD. J. Parallel Distributed Comput. 189: 104868 (2024) - [c76]Helena S. Silva, Maria Clicia Stelling de Castro, Fabrício A. B. da Silva, Alba C. M. A. Melo:
A Framework for Automated Parallel Execution of Scientific Multi-workflow Applications in the Cloud with Work Stealing. Euro-Par (3) 2024: 298-311 - [c75]Alba Cristina Magalhaes Alves de Melo, Ananth Kalyanaraman:
HiCOMB 2024 Preface and Committees. IPDPS (Workshops) 2024: 540 - 2023
- [j45]Leonardo Rebouças de Carvalho, Alba Cristina Magalhaes Alves de Melo, Aletéia P. F. Araújo:
AFMC: An alignment framework for multiple computing services and providers. Concurr. Comput. Pract. Exp. 35(18) (2023) - [j44]Alan L. Nunes, Alba C. M. A. Melo, Claude Tadonki, Cristina Boeres, Daniel de Oliveira, Lúcia Maria de Assumpção Drummond:
Optimizing computational costs of Spark for SARS-CoV-2 sequences comparisons on a commercial cloud. Concurr. Comput. Pract. Exp. 35(18) (2023) - [j43]Gustavo Portella, Eduardo Yoshio Nakano, Genaína Nunes Rodrigues, Azzedine Boukerche, Alba C. M. A. Melo:
A Novel Statistical and Neural Network Combined Approach for the Cloud Spot Market. IEEE Trans. Cloud Comput. 11(1): 278-290 (2023) - 2022
- [j42]Willian Barreiros Jr., Alba C. M. A. Melo, Jun Kong, Renato Ferreira, Tahsin M. Kurç, Joel H. Saltz, George Teodoro:
Efficient microscopy image analysis on CPU-GPU systems with cost-aware irregular data partitioning. J. Parallel Distributed Comput. 164: 40-54 (2022) - 2021
- [j41]Jeremias M. Gomes, Jun Kong, Tahsin M. Kurç, Alba C. M. A. Melo, Renato Ferreira, Joel H. Saltz, George Teodoro:
Building robust pathology image analyses with uncertainty quantification. Comput. Methods Programs Biomed. 208: 106291 (2021) - [j40]Carlos Antônio Campos Jorge, Alexandre Solon Nery, Alba C. M. A. Melo, Alfredo Goldman:
A CPU-FPGA heterogeneous approach for biological sequence comparison using high-level synthesis. Concurr. Comput. Pract. Exp. 33(4) (2021) - [j39]Marco Antonio C. de Figueiredo, João Paulo Navarro, Edans Flavius de Oliveira Sandes, George Teodoro, Alba C. M. A. Melo:
Parallel Fine-Grained Comparison of Long DNA Sequences in Homogeneous and Heterogeneous GPU Platforms With Pruning. IEEE Trans. Parallel Distributed Syst. 32(12): 3053-3065 (2021) - [c74]Luan Teylo, Alan L. Nunes, Alba C. M. A. Melo, Cristina Boeres, Lúcia Maria de A. Drummond, Natália Florencio Martins:
Comparing SARS-CoV-2 Sequences using a Commercial Cloud with a Spot Instance Based Dynamic Scheduler. CCGRID 2021: 247-256 - [c73]Rafaela C. Brum, Walisson P. Sousa, Alba C. M. A. Melo, Cristiana Bentes, Maria Clicia Stelling de Castro, Lúcia Maria de A. Drummond:
A Fault Tolerant and Deadline Constrained Sequence Alignment Application on Cloud-Based Spot GPU Instances. Euro-Par 2021: 317-333 - [c72]Vanessa S. Silva, Maiana O. C. Costa, Maria Clicia Stelling de Castro, Helena S. Silva, Maria Emília M. T. Walter, Alba C. M. A. Melo, Kary A. C. Ocaña, Marcelo T. dos Santos, Marisa F. Nicolas, Anna Cristina C. Carvalho, Andrea Henriques-Pons, Fabrício Alves Barbosa da Silva:
CellHeap: A Workflow for Optimizing COVID-19 Single-Cell RNA-Seq Data Processing in the Santos Dumont Supercomputer. BSB 2021: 41-52 - 2020
- [j38]Willian Barreiros Jr., Jeremias Moreira, Tahsin M. Kurç, Jun Kong, Alba C. M. A. Melo, Joel H. Saltz, George Teodoro:
Optimizing parameter sensitivity analysis of large-scale microscopy image analysis workflows with multilevel computation reuse. Concurr. Comput. Pract. Exp. 32(2) (2020) - [j37]Daniel Sundfeld, George Teodoro, Jakob Hull Havgaard, Jan Gorodkin, Alba C. M. A. Melo:
Using GPU to accelerate the pairwise structural RNA alignment with base pair probabilities. Concurr. Comput. Pract. Exp. 32(10) (2020) - [j36]Edans F. de O. Sandes, George Luiz Medeiros Teodoro, Alba C. M. A. Melo:
Bitmap filter: Speeding up exact set similarity joins with bitwise operations. Inf. Syst. 88 (2020) - [c71]Marco Antonio C. de Figueiredo, Edans Flavius de Oliveira Sandes, George Teodoro, Alba C. M. A. Melo:
Parallel Comparison of Huge DNA Sequences in Multiple GPUs with Block Pruning. PDP 2020: 22-29 - [c70]Rafael A. Lopes, Samuel Thibault, Alba C. M. A. Melo:
MASA-StarPU: Parallel Sequence Comparison with Multiple Scheduling Policies and Pruning. SBAC-PAD 2020: 225-232
2010 – 2019
- 2019
- [j35]Jeremias M. Gomes, Willian Barreiros Jr., Tahsin M. Kurç, Alba C. M. A. Melo, Jun Kong, Joel H. Saltz, George Teodoro:
Sensitivity analysis in digital pathology: Handling large number of parameters with compute expensive workflows. Comput. Biol. Medicine 108: 371-381 (2019) - [j34]Marco Antonio C. de Figueiredo, Edans Flavius de Oliveira Sandes, Genaína Nunes Rodrigues, George Luiz Medeiros Teodoro, Alba Cristina Magalhaes Alves de Melo:
MASA-OpenCL: Parallel pruned comparison of long DNA sequences with OpenCL. Concurr. Comput. Pract. Exp. 31(11) (2019) - [j33]Gustavo Portella, Genaína Nunes Rodrigues, Eduardo Yoshio Nakano, Alba C. M. A. Melo:
Statistical analysis of Amazon EC2 cloud pricing models. Concurr. Comput. Pract. Exp. 31(18) (2019) - [j32]Célia Ghedini Ralha, Aldo H. D. Mendes, Luiz A. Laranjeira, Aletéia P. F. Araújo, Alba C. M. A. Melo:
Multiagent system for dynamic resource provisioning in cloud computing platforms. Future Gener. Comput. Syst. 94: 80-96 (2019) - [j31]Gabriel H. G. Silva, Edans F. de O. Sandes, George Teodoro, Alba C. M. A. Melo:
Using Multiple Fickett Bands to Accelerate Biological Sequence Comparisons. J. Comput. Biol. 26(9): 908-922 (2019) - [j30]Luis F. R. Taveira, Tahsin M. Kurç, Alba C. M. A. Melo, Jun Kong, Erich Bremer, Joel H. Saltz, George Teodoro:
Multi-objective Parameter Auto-tuning for Tissue Image Segmentation Workflows. J. Digit. Imaging 32(3): 521-533 (2019) - [j29]Alba de Melo, Jesús Carretero, Per Stenström, Sanjay Ranka, Eduard Ayguadé:
Trends on heterogeneous and innovative hardware and software systems. J. Parallel Distributed Comput. 133: 362-364 (2019) - [c69]Gustavo Portella, Eduardo Yoshio Nakano, Genaína Nunes Rodrigues, Alba C. M. A. Melo:
Utility-Based Strategy for Balanced Cost and Availability at the Cloud Spot Market. CLOUD 2019: 214-218 - [c68]Alba Cristina Magalhaes Alves de Melo, Ananth Kalyanaraman:
Introduction to HiCOMB 2019. IPDPS Workshops 2019: 163-164 - [c67]Alba Cristina Magalhaes Alves de Melo:
APDCM 2019 Keynote Talk. IPDPS Workshops 2019: 582 - [i4]Eduardo Scartezini, Willian Barreiros Jr., Tahsin M. Kurç, Jun Kong, Alba C. M. A. Melo, Joel H. Saltz, George Teodoro:
Run-time Parameter Sensitivity Analysis Optimizations. CoRR abs/1910.14548 (2019) - 2018
- [j28]Jesús Pérez Serrano, Edans F. de O. Sandes, Alba Cristina Magalhaes Alves de Melo, Manuel Ujaldón:
DNA sequences alignment in multi-GPUs: acceleration and energy payoff. BMC Bioinform. 19-S(14): 161-176 (2018) - [j27]Edans Flavius de Oliveira Sandes, George Luiz Medeiros Teodoro, Maria Emília M. T. Walter, Xavier Martorell, Eduard Ayguadé, Alba Cristina Magalhaes Alves de Melo:
Formalization of Block Pruning: Reducing the Number of Cells Computed in Exact Biological Sequence Comparison Algorithms. Comput. J. 61(5): 687-713 (2018) - [j26]Jeremias M. Gomes, Alba Cristina Magalhaes Alves de Melo, Jun Kong, Tahsin M. Kurç, Joel H. Saltz, George Teodoro:
Cooperative and out-of-core execution of the irregular wavefront propagation pattern on hybrid machines with Intel® Xeon Phi™. Concurr. Comput. Pract. Exp. 30(14) (2018) - [j25]Daniel Sundfeld, Caina Razzolini, George Teodoro, Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo:
PA-Star: A disk-assisted parallel A-Star strategy with locality-sensitive hash for multiple sequence alignment. J. Parallel Distributed Comput. 112: 154-165 (2018) - [i3]Luis F. R. Taveira, Tahsin M. Kurç, Alba C. M. A. Melo, Jun Kong, Erich Bremer, Joel H. Saltz, George Teodoro:
Tuning for Tissue Image Segmentation Workflows for Accuracy and Performance. CoRR abs/1810.02911 (2018) - 2017
- [j24]George Teodoro, Tahsin M. Kurç, Luis F. R. Taveira, Alba C. M. A. Melo, Yi Gao:
Algorithm sensitivity analysis and parameter tuning for tissue image segmentation pipelines. Bioinform. 33(7): 1064-1072 (2017) - [j23]Alessandro Ferreira Leite, Vander Alves, Genaína Nunes Rodrigues, Claude Tadonki, Christine Eisenbeis, Alba Cristina Magalhaes Alves de Melo:
Dohko: an autonomic system for provision, configuration, and management of inter-cloud environments based on a software product line engineering method. Clust. Comput. 20(3): 1951-1976 (2017) - [c66]Gabriel H. G. Silva, Edans F. de O. Sandes, George Teodoro, Alba C. M. A. Melo:
Parallel Biological Sequence Comparison in Linear Space with Multiple Adjustable Bands. AlCoB 2017: 167-179 - [c65]Willian Barreiros, George Teodoro, Tahsin M. Kurç, Jun Kong, Alba C. M. A. Melo, Joel H. Saltz:
Parallel and Efficient Sensitivity Analysis of Microscopy Image Segmentation Workflows in Hybrid Systems. CLUSTER 2017: 25-35 - [c64]Jesús Pérez Serrano, Edans Flavius de Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo, Manuel Ujaldón:
Smith-Waterman Acceleration in Multi-GPUs: A Performance per Watt Analysis. IWBBIO (2) 2017: 512-523 - [c63]Daniel Sundfeld, Jakob Hull Havgaard, Jan Gorodkin, Alba Cristina Magalhaes Alves de Melo:
CUDA-Sankoff: Using GPU to Accelerate the Pairwise Structural RNA Alignment. PDP 2017: 295-302 - [i2]Edans F. de O. Sandes, George Teodoro, Alba C. M. A. Melo:
Bitmap Filter: Speeding up Exact Set Similarity Joins with Bitwise Operations. CoRR abs/1711.07295 (2017) - 2016
- [j22]Daniel Sundfeld, Jakob Hull Havgaard, Alba Cristina Magalhaes Alves de Melo, Jan Gorodkin:
Foldalign 2.5: multithreaded implementation for pairwise structural RNA alignment. Bioinform. 32(8): 1238-1240 (2016) - [j21]Alessandro Ferreira Leite, Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo, Christine Eisenbeis, Claude Tadonki, Célia Ghedini Ralha:
Power-aware server consolidation for federated clouds. Concurr. Comput. Pract. Exp. 28(12): 3427-3444 (2016) - [j20]Edans Flavius de Oliveira Sandes, Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo:
Parallel Optimal Pairwise Biological Sequence Comparison: Algorithms, Platforms, and Classification. ACM Comput. Surv. 48(4): 63:1-63:36 (2016) - [j19]Edans Flavius de Oliveira Sandes, Guillermo Miranda, Xavier Martorell, Eduard Ayguadé, George Teodoro, Alba Cristina Magalhaes Alves de Melo:
MASA: A Multiplatform Architecture for Sequence Aligners with Block Pruning. ACM Trans. Parallel Comput. 2(4): 28:1-28:31 (2016) - [j18]Edans Flavius de Oliveira Sandes, Guillermo Miranda, Xavier Martorell, Eduard Ayguadé, George Teodoro, Alba Cristina Magalhaes Alves de Melo:
CUDAlign 4.0: Incremental Speculative Traceback for Exact Chromosome-Wide Alignment in GPU Clusters. IEEE Trans. Parallel Distributed Syst. 27(10): 2838-2850 (2016) - [c62]Alessandro Ferreira Leite, Vander Alves, Genaína Nunes Rodrigues, Claude Tadonki, Christine Eisenbeis, Alba Cristina Magalhaes Alves de Melo:
Autonomic Provisioning, Configuration, and Management of Inter-cloud Environments Based on a Software Product Line Engineering Method. ICCAC 2016: 72-83 - [i1]George Teodoro, Tahsin M. Kurç, Luis F. R. Taveira, Alba C. M. A. Melo, Jun Kong, Joel H. Saltz:
Efficient Methods and Parallel Execution for Algorithm Sensitivity Analysis with Parameter Tuning on Microscopy Imaging Datasets. CoRR abs/1612.03413 (2016) - 2015
- [c61]Alessandro Ferreira Leite, Vander Alves, Genaína Nunes Rodrigues, Claude Tadonki, Christine Eisenbeis, Alba Cristina Magalhaes Alves de Melo:
Automating Resource Selection and Configuration in Inter-clouds through a Software Product Line Method. CLOUD 2015: 726-733 - [c60]Daniel Sundfeld, George Teodoro, Alba Cristina Magalhaes Alves de Melo:
Parallel A-Star Multiple Sequence Alignment with Locality-Sensitive Hash Functions. CISIS 2015: 342-347 - [c59]Marco Antonio C. de Figueiredo, Edans F. de O. Sandes, Alba Cristina Magalhaes Alves de Melo:
Parallel Megabase DNA Sequence Comparison with OpenCL. HiPC 2015: 436-445 - [c58]Jeremias M. Gomes, George Teodoro, Alba de Melo, Jun Kong, Tahsin M. Kurç, Joel H. Saltz:
Efficient Irregular Wavefront Propagation Algorithms on Intel(R) Xeon Phi(TM). SBAC-PAD 2015: 25-32 - 2014
- [j17]Edans Flavius de Oliveira Sandes, Célia Ghedini Ralha, Alba Cristina Magalhaes Alves de Melo:
An agent-based solution for dynamic multi-node wavefront balancing in biological sequence comparison. Expert Syst. Appl. 41(10): 4929-4938 (2014) - [j16]Felipe Pontes Guimarães, Pedro Célestin, Daniel Macêdo Batista, Genaína Nunes Rodrigues, Alba Cristina Magalhaes Alves de Melo:
A Framework for Adaptive Fault-Tolerant Execution of Workflows in the Grid: Empirical and Theoretical Analysis. J. Grid Comput. 12(1): 127-151 (2014) - [j15]Alba de Melo, Jean-Luc Gaudiot, Luiz De Rose, Kunle Olukotun, Albert Y. Zomaya:
Guest Editorial. Int. J. Parallel Program. 42(1): 1-3 (2014) - [j14]Li Weigang, Edans F. de O. Sandes, Jianya Zheng, Alba Cristina Magalhaes Alves de Melo, Lorna Uden:
Querying dynamic communities in online social networks. J. Zhejiang Univ. Sci. C 15(2): 81-90 (2014) - [c57]Edans F. de O. Sandes, Guillermo Miranda, Alba Cristina Magalhaes Alves de Melo, Xavier Martorell, Eduard Ayguadé:
CUDAlign 3.0: Parallel Biological Sequence Comparison in Large GPU Clusters. CCGRID 2014: 160-169 - [c56]Alessandro Ferreira Leite, Tainá Raiol, Claude Tadonki, Maria Emília M. T. Walter, Christine Eisenbeis, Alba Cristina Magalhaes Alves de Melo:
Excalibur: an autonomic cloud architecture for executing parallel applications. CloudDP@EuroSys 2014: 2:1-2:6 - [c55]Alessandro Ferreira Leite, Claude Tadonki, Christine Eisenbeis, Alba de Melo:
A Fine-grained Approach for Power Consumption Analysis and Prediction. ICCS 2014: 2260-2271 - [c54]Alba Cristina Magalhaes Alves de Melo, Srinivas Aluru, David A. Bader:
HiCOMB Introduction and Committees. IPDPS Workshops 2014: 497-498 - [c53]Edans F. de O. Sandes, Guillermo Miranda, Alba Cristina Magalhaes Alves de Melo, Xavier Martorell, Eduard Ayguadé:
Fine-grain parallel megabase sequence comparison with multiple heterogeneous GPUs. PPoPP 2014: 383-384 - 2013
- [j13]Khaled Hamidouche, Fernando Machado Mendonca, Joel Falcou, Alba Cristina Magalhaes Alves de Melo, Daniel Etiemble:
Parallel Smith-Waterman Comparison on Multicore and Manycore Computing Platforms with BSP++. Int. J. Parallel Program. 41(1): 111-136 (2013) - [j12]Emerson de Araujo Macedo, Alba Cristina Magalhaes Alves de Melo, Gerson Henrique Pfitscher, Azzedine Boukerche:
Multiple biological sequence alignment in heterogeneous multicore clusters with user-selectable task allocation policies. J. Supercomput. 63(3): 740-756 (2013) - [j11]Edans Flavius de Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo:
Retrieving Smith-Waterman Alignments with Optimizations for Megabase Biological Sequences Using GPU. IEEE Trans. Parallel Distributed Syst. 24(5): 1009-1021 (2013) - [c52]Luiz De Rose, Jan Treibig, William Jalby, Alba Cristina Magalhaes Alves de Melo, David Abramson, Alastair F. Donaldson, Tomàs Margalef:
Topic 11: Multicore and Manycore Programming - (Introduction). Euro-Par 2013: 545-546 - [c51]Fernando Machado Mendonca, Alba Cristina Magalhaes Alves de Melo:
Biological Sequence Comparison on Hybrid Platforms with Dynamic Workload Adjustment. IPDPS Workshops 2013: 501-509 - [c50]Daniel Sundfeld, Alba Cristina Magalhaes Alves de Melo:
MSA-GPU: Exact Multiple Sequence Alignment Using GPU. BSB 2013: 47-58 - [c49]Guilherme Menegói, Tainá Raiol, João Victor de Araújo Oliveira, Edans Flavius de Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo, Andrea Queiroz Maranhão, Ildinete Silva-Pereira, Anamélia Lorenzetti Bocca, Ana Paula Junqueira-Kipnis, Maria Emília M. T. Walter, André Kipnis, Marcelo de Macedo Brígido:
A Pipeline to Characterize Virulence Factors in Mycobacterium Massiliense Genome. BSB 2013: 202-213 - 2012
- [j10]Alessandro Ferreira Leite, Hammurabi das Chagas Mendes, Weigang Li, Alba Cristina Magalhaes Alves de Melo, Azzedine Boukerche:
An architecture for P2P bag-of-tasks execution with multiple task allocation policies in desktop grids. Clust. Comput. 15(4): 351-361 (2012) - [j9]Azzedine Boukerche, Rodolfo Bezerra Batista, Alba Cristina Magalhaes Alves de Melo, Felipe Brandt Scarel, Lavir Antonio Bahia Carvalho de Souza:
Exact Parallel Alignment of megabase genomic Sequences with Tunable Work Distribution. Int. J. Found. Comput. Sci. 23(2): 407-429 (2012) - [j8]Juan Fernando Eusse Giraldo, Nahri Moreano, Alba Cristina Magalhaes Alves de Melo, Ricardo Pezzuol Jacobi:
A Protein Sequence Analysis Hardware Accelerator Based on Divergences. Int. J. Reconfigurable Comput. 2012: 201378:1-201378:19 (2012) - [c48]Alessandro Ferreira Leite, Alba Cristina Magalhaes Alves de Melo:
Energy-Aware Multi-Agent Server Consolidation in Federated Clouds. CloudComp 2012: 72-81 - [c47]Alessandro Ferreira Leite, Alba Cristina Magalhaes Alves de Melo:
Executing a biological sequence comparison application on a federated cloud environment. HiPC 2012: 1-9 - [c46]Edans Flavius de Oliveira Sandes, Jacir Luiz Bordim, Alba Cristina Magalhaes Alves de Melo, Yasuaki Ito:
Record Route Elimination (RRE): An Energy-Efficient Broadcast Algorithm. ICNC 2012: 247-253 - [c45]Jan Mendonca Correa, Alba Cristina Magalhaes Alves de Melo, Ricardo P. Jacobi, Azzedine Boukerche:
Parallel Simulated Annealing for Fragment Based Sequence Alignment. IPDPS Workshops 2012: 641-648 - [c44]Edans Flavius de Oliveira Sandes, Li Weigang, Alba Cristina Magalhaes Alves de Melo:
Logical Model of Relationship for Online Social Networks and Performance Optimizing of Queries - WISE 2012 Challenge - T1: Performance Track Scalability Winner. WISE 2012: 726-736 - 2011
- [c43]Felipe Pontes Guimarães, Alba Cristina Magalhaes Alves de Melo:
User-Defined Adaptive Fault-Tolerant Execution of Workflows in the Grid. CIT 2011: 356-362 - [c42]Jan Mendonca Correa, Alba Cristina Magalhaes Alves de Melo, Ricardo P. Jacobi, Azzedine Boukerche:
A fragment based alignment in linear space. BIBM Workshops 2011: 42-49 - [c41]Alisson Andrade, Alba Cristina Magalhaes Alves de Melo:
A WS-Agreement-Based QoS Auditor Negotiation Mechanism for Grids. GRID 2011: 1-8 - [c40]Emerson de Araujo Macedo, Alba Cristina Magalhaes Alves de Melo, Gerson Henrique Pfitscher, Azzedine Boukerche:
Hybrid MPI/OpenMP Strategy for Biological Multiple Sequence Alignment with DIALIGN-TX in Heterogeneous Multicore Clusters. IPDPS Workshops 2011: 418-425 - [c39]Edans Flavius de Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo:
Smith-Waterman Alignment of Huge Sequences with GPU in Linear Space. IPDPS 2011: 1199-1211 - [e1]Jean-Luc Gaudiot, Alba C. M. A. Melo, Alberto F. De Souza, Lucia Catabriga:
23rd International Symposium on Computer Architecture and High Performance Computing, SBAC-PAD 2011, Vitória, Espírito Santo, Brazil, October 26-29, 2011. IEEE Computer Society 2011, ISBN 978-0-7695-4573-8 [contents] - 2010
- [j7]Marcelo S. Sousa, Alba Cristina Magalhaes Alves de Melo, Azzedine Boukerche:
An adaptive multi-policy grid service for biological sequence comparison. J. Parallel Distributed Comput. 70(2): 160-172 (2010) - [j6]Azzedine Boukerche, Jan Mendonca Correa, Alba Cristina Magalhaes Alves de Melo, Ricardo P. Jacobi:
A Hardware Accelerator for the Fast Retrieval of DIALIGN Biological Sequence Alignments in Linear Space. IEEE Trans. Computers 59(6): 808-821 (2010) - [c38]Juan Fernando Eusse Giraldo, Nahri Moreano, Ricardo Pezzuol Jacobi, Alba Cristina Magalhaes Alves de Melo:
A HMMER hardware accelerator using divergences. DATE 2010: 405-410 - [c37]Lidia A. Miranda, Marcos F. Caetano, Alba Cristina Magalhaes Alves de Melo, Jan Mendonca Correa, Jacir Luiz Bordim:
Multiple Biological Sequence Alignment with a Parallel Island Injection Genetic Algorithm. HPCC 2010: 314-321 - [c36]Edans Flavius de Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo:
CUDAlign: using GPU to accelerate the comparison of megabase genomic sequences. PPoPP 2010: 137-146 - [c35]Antonio Carlos de Arruda Junior, Alessandro Ferreira Leite, Cícero Roberto Ferreira de Almeida, Alba Cristina Magalhaes Alves de Melo, Li Weigang:
Impact Analysis Model for Brasília Area Control Center using Multi-agent System with Reinforcement Learning. SEKE 2010: 499-502
2000 – 2009
- 2009
- [c34]Azzedine Boukerche, Rodolfo Bezerra Batista, Alba Cristina Magalhaes Alves de Melo:
Exact pairwise alignment of megabase genome biological sequences using a novel z-align parallel strategy. IPDPS 2009: 1-8 - [c33]Hammurabi das Chagas Mendes, Weigang Li, Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo:
Bag-of-Tasks Self-Scheduling over Range-Queriable Search Overlays. NPC 2009: 109-116 - 2008
- [j5]Rodolfo Bezerra Batista, Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo:
A parallel strategy for biological sequence alignment in restricted memory space. J. Parallel Distributed Comput. 68(4): 548-561 (2008) - [c32]Glauber Scorsatto, Alba Cristina Magalhaes Alves de Melo:
GrAMoS: A Flexible Service for WS-Agreement Monitoring in Grid Environments. Euro-Par 2008: 534-543 - [c31]Azzedine Boukerche, Marcelo Nardelli Pinto Santana, Alba Cristina Magalhaes Alves de Melo:
A task allocation framework for biological sequence comparison applications in heterogeneous environments. IPDPS 2008: 1-8 - 2007
- [j4]Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo, Edans Flavius de Oliveira Sandes, Mauricio Ayala-Rincón:
An exact parallel algorithm to compare very long biological sequences in clusters of workstations. Clust. Comput. 10(2): 187-202 (2007) - [j3]Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo, Mauricio Ayala-Rincón, Maria Emília Telles Walter:
Parallel strategies for the local biological sequence alignment in a cluster of workstations. J. Parallel Distributed Comput. 67(2): 170-185 (2007) - [c30]Azzedine Boukerche, Jan Mendonca Correa, Alba Cristina Magalhaes Alves de Melo, Ricardo P. Jacobi, Adson Ferreira da Rocha:
An FPGA-Based Accelerator for Multiple Biological Sequence Alignment with DIALIGN. HiPC 2007: 71-82 - [c29]Azzedine Boukerche, Jan Mendonca Correa, Alba Cristina Magalhaes Alves de Melo, Ricardo P. Jacobi, Adson Ferreira da Rocha:
Reconfigurable Architecture for Biological Sequence Comparison in Reduced Memory Space. IPDPS 2007: 1-8 - [c28]Célia Ghedini Ralha, Jose Nelson C. Allemand, Alba Cristina Magalhaes Alves de Melo:
A Four-layered Semantic Grid Architecture. SEKE 2007: 724- - [c27]Marcelo Nardelli Pinto Santana, Alba Cristina Magalhaes Alves de Melo:
Biological Sequence Comparison Application in Heterogeneous Environments with Dynamic Programming Algorithms. BSB 2007: 46-56 - [p1]Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo:
Bioinformatics Applications in Grid Computing Environments. Grid Computing for Bioinformatics and Computational Biology 2007: 301-323 - 2006
- [j2]Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo:
Integrating coordinated checkpointing and recovery mechanisms into DSM synchronization barriers. ACM J. Exp. Algorithmics 11 (2006) - [c26]Tania Gomes Ramos, Alba Cristina Magalhaes Alves de Melo:
An Extensible Resource Discovery Mechanism for Grid Computing Environments. CCGRID 2006: 115-122 - [c25]Rodolfo Bezerra Batista, Alba Cristina Magalhaes Alves de Melo:
Z-align: An Exact and Parallel Strategy for Local Biological Sequence Alignment in User-Restricted Memory Space. CLUSTER 2006 - [c24]J. G. R. C. Lopes, Alba Cristina Magalhaes Alves de Melo, Mario A. R. Dantas, Célia Ghedini Ralha:
A Proposal and Evaluation of a Mechanism for Grid Ontology Merge. HPCS 2006: 2 - [c23]Azzedine Boukerche, Marcelo S. Sousa, Alba Cristina Magalhaes Alves de Melo:
A multiple task allocation framework for biological sequence comparison in a grid environment. IPDPS 2006 - [c22]Marcelo S. Sousa, Alba Cristina Magalhaes Alves de Melo:
PackageBLAST: an adaptive multi-policy grid service for biological sequence comparison. SAC 2006: 156-160 - 2005
- [c21]Weigang Li, Marcos Vinícius Pinheiro Dib, Alba Cristina Magalhaes Alves de Melo:
Method to Balance the Communication Among Multi-agents in Real Time Traffic Synchronization. FSKD (1) 2005: 1053-1062 - [c20]Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo, Jeferson G. Koch, Cicero Roberto de Oliveira Galdino:
Multiple Coherence and Coordinated Checkpointing Protocols for DSM Systems. ICPP Workshops 2005: 531-538 - [c19]Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo, Mauricio Ayala-Rincón, Thomas Mailleux Santana:
Parallel Strategies for Local Biological Sequence Alignment in a Cluster of Workstations. IPDPS 2005 - [c18]Alba Cristina Magalhaes Alves de Melo, Nilo S. B. Silva, Hammurabi das Chagas Mendes, Diego F. Aranha:
Obtaining possible execution histories on multiple memory consistency models. SCCC 2005: 93-100 - [c17]Azzedine Boukerche, Jeferson G. Koch, Alba Cristina Magalhaes Alves de Melo:
Integrating Coordinated Checkpointing and Recovery Mechanisms into DSM Synchronization Barriers. WEA 2005: 403-414 - [c16]Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo, Mauricio Ayala-Rincón, Thomas Mailleux Santana:
Parallel Smith-Waterman Algorithm for Local DNA Comparison in a Cluster of Workstations. WEA 2005: 464-475 - 2004
- [j1]Alba Cristina Magalhaes Alves de Melo, Maria Emília M. T. Walter, Renata Cristina Faray Melo, Marcelo Nardelli Pinto Santana, Rodolfo Bezerra Batista:
Local DNA Sequence Alignment in a Cluster ofWorkstations: Algorithms and Tools. J. Braz. Comput. Soc. 10(2): 73-80 (2004) - [c15]Rodolfo Bezerra Batista, D. N. Silva, Alba Cristina Magalhaes Alves de Melo, Weigang Li:
Using a DSM application to locally align DNA sequences. CCGRID 2004: 372-378 - [c14]Azzedine Boukerche, Alba Cristina Magalhaes Alves de Melo, Maria Emília Telles Walter, Renata Cristina Faray Melo, Marcelo Nardelli Pinto Santana, Rodolfo Bezerra Batista:
A Performance Evaluation of a Local DNA Sequence Alignment Algorithm on a Cluster of Workstations. IPDPS 2004 - [c13]Weigang Li, Daniel Amaral Cardoso, Marcos Vinícius Pinheiro Dib, Alba Cristina Magalhaes Alves de Melo:
Distributed Knowledge Based System Using Grid Computing for Real Time Air Traffic Synchronization - ATFMGC. SEKE 2004: 396-401 - [c12]Edward de Oliveira Ribeiro, Gustavo G. Zerlotini, Irving Lopes, Victor Ribeiro, Alba Cristina Magalhaes Alves de Melo, Maria Emília Telles Walter, Marcos Motta:
Rede BIOFOCO: A distributed computation of Interpro Pfam, PROSITE and ProDom for protein annotation. WOB 2004: 65-72 - [c11]Andre Riccioppo, Alba Cristina Magalhaes Alves de Melo:
Parallel Biological Sequence Comparison in Heterogeneous Systems Using CORBA. WOB 2004: 171-174 - 2003
- [c10]Renata Cristina Faray Melo, Maria Emília Telles Walter, Alba Cristina Magalhaes Alves de Melo, Rodolfo Bezerra Batista, Marcelo Nardelli Pinto Santana, Thelmo E. S. Martins, Tiago M. Fonseca:
Comparing Two Long Biological Sequences Using a DSM System. Euro-Par 2003: 517-524 - [c9]Renata Cristina Faray Melo, Maria Emília Telles Walter, Alba Cristina Magalhaes Alves de Melo, Rodolfo Bezerra Batista:
Parallel DNA Sequence Alignment Using a DSM System in a Cluster of Workstations. International Conference on Computational Science 2003: 981-990 - [c8]Rodolfo Bezerra Batista, Alerrandro L. A. C. Correa, Alba Cristina Magalhaes Alves de Melo:
Computing Binary Space Partition Trees using a Scope Consistent DSM System in a Cluster of Workstations. PDP 2003: 93-100 - 2002
- [c7]Gláucia de Oliveira Dias, Alba Cristina Magalhaes Alves de Melo:
Integrating Optimistic Virtual Synchrony to a CORBA Object Group Service. OTM 2002: 711-722 - [c6]Weigang Li, Marcos Vinícius Pinheiro Dib, Wesley Martins Teles, Vlaudemir Morais de Andrade, Alba C. M. A. Melo, Judas T. Cariolano:
Using ant-behavior-based simulation model AntWeb to improve website organization. Data Mining and Knowledge Discovery: Theory, Tools, and Technology 2002: 229-240 - 2001
- [c5]Cicero Roberto de Oliveira Galdino, Alba Cristina Magalhaes Alves de Melo:
Application-Controlled Coherence Protocols for Scope Consistent Software DSMs. HPCN Europe 2001: 263-272 - [c4]Jan Mendonca Correa, Alba Cristina Magalhaes Alves de Melo:
Using a Classifier System to Improve Dynamic Load Balancing. ICPP Workshops 2001: 411-422
1990 – 1999
- 1999
- [c3]Alba Cristina Magalhaes Alves de Melo, Simone Cintra Chagas:
Visual-MCM: Visualising Execution Histories on Multiple Memory Consistency Models. ACPC 1999: 500-509 - [c2]Alba Cristina Magalhaes Alves de Melo:
Defining Uniform and Hybrid Memory Consistency Models on a Unified Framework. HICSS 1999 - 1997
- [c1]Alba Cristina Magalhaes Alves de Melo:
Multiple Memory Consistency Models on a SVM Parallel Programming Environment. OPODIS 1997: 249-262
Coauthor Index
Edans Flavius de Oliveira Sandes
aka: Edans F. de O. Sandes
aka: Edans F. de O. Sandes
George Teodoro
aka: George Luiz Medeiros Teodoro
aka: George Luiz Medeiros Teodoro
Maria Emília M. T. Walter
aka: Maria Emília Telles Walter
aka: Maria Emília Telles Walter
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