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Publication search results
found 189 matches
- 2019
- Fentaw Abegaz, Kridsadakorn Chaichoompu
, Emmanuelle Génin
, David W. Fardo
, Inke R. König, Jestinah M. Mahachie John, Kristel Van Steen:
Principals about principal components in statistical genetics. Briefings Bioinform. 20(6): 2200-2216 (2019) - Emmanuel S. Adabor, George K. Acquaah-Mensah:
Machine learning approaches to decipher hormone and HER2 receptor status phenotypes in breast cancer. Briefings Bioinform. 20(2): 504-514 (2019) - Saira Afzal
, Irene Gil-Farina
, Richard Gabriel, Shahzad Ahmad
, Christof von Kalle
, Manfred Schmidt, Raffaele Fronza:
Systematic comparative study of computational methods for T-cell receptor sequencing data analysis. Briefings Bioinform. 20(1): 222-234 (2019) - Alicia Amadoz
, Marta R. Hidalgo
, Cankut Çubuk
, José Carbonell-Caballero
, Joaquín Dopazo
:
A comparison of mechanistic signaling pathway activity analysis methods. Briefings Bioinform. 20(5): 1655-1668 (2019) - Dionysios A. Antonopoulos, Rida Assaf, Ramy Karam Aziz, Thomas S. Brettin, Christopher Bun, Neal Conrad, James J. Davis, Emily M. Dietrich, Terry Disz, Svetlana Gerdes, Ronald W. Kenyon, Dustin Machi, Chunhong Mao, Daniel E. Murphy-Olson, Eric K. Nordberg, Gary J. Olsen, Robert Olson, Ross A. Overbeek, Bruce D. Parrello, Gordon D. Pusch, John Santerre, Maulik Shukla
, Rick L. Stevens, Margo VanOeffelen, Veronika Vonstein, Andrew S. Warren
, Alice R. Wattam, Fangfang Xia, Hyun Seung Yoo:
PATRIC as a unique resource for studying antimicrobial resistance. Briefings Bioinform. 20(4): 1094-1102 (2019) - Ivan V. Antonov
, Evgeny Mazurov, Mark Borodovsky, Yulia A. Medvedeva
:
Prediction of lncRNAs and their interactions with nucleic acids: benchmarking bioinformatics tools. Briefings Bioinform. 20(2): 551-564 (2019) - David Arndt
, Ana Marcu, Yongjie Liang, David S. Wishart:
PHAST, PHASTER and PHASTEST: Tools for finding prophage in bacterial genomes. Briefings Bioinform. 20(4): 1560-1567 (2019) - Teresa K. Attwood
, Sarah Blackford, Michelle D. Brazas, Angela C. Davies
, Maria Victoria Schneider:
A global perspective on evolving bioinformatics and data science training needs. Briefings Bioinform. 20(2): 398-404 (2019) - Rajeev K. Azad, Vladimir Shulaev:
Metabolomics technology and bioinformatics for precision medicine. Briefings Bioinform. 20(6): 1957-1971 (2019) - Md Momin Al Aziz
, Md. Nazmus Sadat, Dima Alhadidi, Shuang Wang, Xiaoqian Jiang, Cheryl L. Brown, Noman Mohammed:
Privacy-preserving techniques of genomic data - a survey. Briefings Bioinform. 20(3): 887-895 (2019) - Adrian Baez-Ortega
, Kevin Gori
:
Computational approaches for discovery of mutational signatures in cancer. Briefings Bioinform. 20(1): 77-88 (2019) - Yu Bao, Simone Marini
, Takeyuki Tamura, Mayumi Kamada, Shingo Maegawa, Hiroshi Hosokawa, Jiangning Song
, Tatsuya Akutsu
:
Toward more accurate prediction of caspase cleavage sites: a comprehensive review of current methods, tools and features. Briefings Bioinform. 20(5): 1669-1684 (2019) - Farnaz Barneh, Mehdi Mirzaie
, Payman Nickchi
, Tuan Zea Tan, Jean-Paul Thiery
, Mehran Piran, Mona Salimi
, Fatemeh Goshadrou, Amir R. Aref, Mohieddin Jafari
:
Integrated use of bioinformatic resources reveals that co-targeting of histone deacetylases, IKBK and SRC inhibits epithelial-mesenchymal transition in cancer. Briefings Bioinform. 20(2): 717-731 (2019) - Guillaume Bernard
, Cheong Xin Chan
, Yao-ban Chan, Xin-Yi Chua
, Yingnan Cong, James M. Hogan, Stefan R. Maetschke
, Mark A. Ragan:
Alignment-free inference of hierarchical and reticulate phylogenomic relationships. Briefings Bioinform. 20(2): 426-435 (2019) - Claire Bertelli
, Keith E. Tilley, Fiona S. L. Brinkman
:
Microbial genomic island discovery, visualization and analysis. Briefings Bioinform. 20(5): 1685-1698 (2019) - Aitor Blanco-Míguez
, Florentino Fdez-Riverola
, Borja Sánchez, Anália Lourenço
:
Resources and tools for the high-throughput, multi-omic study of intestinal microbiota. Briefings Bioinform. 20(3): 1032-1056 (2019) - Maciej Blaszczyk, Maciej Pawel Ciemny, Andrzej Kolinski
, Mateusz Kurcinski
, Sebastian Kmiecik
:
Protein-peptide docking using CABS-dock and contact information. Briefings Bioinform. 20(6): 2299-2305 (2019) - Kai Blin
, Hyun Uk Kim
, Marnix H. Medema
, Tilmann Weber
:
Recent development of antiSMASH and other computational approaches to mine secondary metabolite biosynthetic gene clusters. Briefings Bioinform. 20(4): 1103-1113 (2019) - Michele Bortolomeazzi
, Enrico Gaffo
, Stefania Bortoluzzi
:
A survey of software tools for microRNA discovery and characterization using RNA-seq. Briefings Bioinform. 20(3): 918-930 (2019) - Johannes Brägelmann
, Justo Lorenzo Bermejo:
A comparative analysis of cell-type adjustment methods for epigenome-wide association studies based on simulated and real data sets. Briefings Bioinform. 20(6): 2055-2065 (2019) - Florian P. Breitwieser
, Jennifer Lu, Steven L. Salzberg
:
A review of methods and databases for metagenomic classification and assembly. Briefings Bioinform. 20(4): 1125-1136 (2019) - Cristina Marino Buslje
, Alexander Miguel Monzon
, Diego Javier Zea
, María Silvina Fornasari, Gustavo D. Parisi
:
On the dynamical incompleteness of the Protein Data Bank. Briefings Bioinform. 20(1): 356-359 (2019) - Damla Senol Cali
, Jeremie S. Kim, Saugata Ghose, Can Alkan
, Onur Mutlu
:
Nanopore sequencing technology and tools for genome assembly: computational analysis of the current state, bottlenecks and future directions. Briefings Bioinform. 20(4): 1542-1559 (2019) - Huansheng Cao, Qin Ma, Xin Chen, Ying Xu:
DOOR: a prokaryotic operon database for genome analyses and functional inference. Briefings Bioinform. 20(4): 1568-1577 (2019) - Fernando Carazo
, Juan P. Romero
, Angel Rubio
:
Upstream analysis of alternative splicing: a review of computational approaches to predict context-dependent splicing factors. Briefings Bioinform. 20(4): 1358-1375 (2019) - Somali Chaterji
, Jinkyu Koo, Ninghui Li, Folker Meyer
, Ananth Grama, Saurabh Bagchi:
Federation in genomics pipelines: techniques and challenges. Briefings Bioinform. 20(1): 235-244 (2019) - Yun-Ru Chen, Hsuan-Cheng Huang, Chen-Ching Lin:
Regulatory feedback loops bridge the human gene regulatory network and regulate carcinogenesis. Briefings Bioinform. 20(3): 976-984 (2019) - Liang Chen
, Liisa Heikkinen, Changliang Wang
, Yang Yang, Huiyan Sun, Garry Wong:
Trends in the development of miRNA bioinformatics tools. Briefings Bioinform. 20(5): 1836-1852 (2019) - Xun Chen
, Jason Kost, Dawei Li
:
Comprehensive comparative analysis of methods and software for identifying viral integrations. Briefings Bioinform. 20(6): 2088-2097 (2019) - Zhen Chen
, Xuhan Liu, Fuyi Li
, Chen Li
, Tatiana T. Marquez-Lago, André Leier
, Tatsuya Akutsu
, Geoffrey I. Webb
, Dakang Xu, Alexander Ian Smith, Lei Li
, Kuo-Chen Chou, Jiangning Song
:
Large-scale comparative assessment of computational predictors for lysine post-translational modification sites. Briefings Bioinform. 20(6): 2267-2290 (2019)
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