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2020 – today
- 2023
[j40]Guillermo Blanco
, Anália Lourenço:
A multilayered graph-based framework to explore behavioural phenomena in social media conversations. Int. J. Medical Informatics 179: 105236 (2023)- [j39]Rubén Yáñez Martínez, Guillermo Blanco, Anália Lourenço:
Spanish Corpora of tweets about COVID-19 vaccination for automatic stance detection. Inf. Process. Manag. 60(3): 103294 (2023) - 2022
- [j38]Martín Pérez-Pérez, Tânia Ferreira, Anália Lourenço, Gilberto Igrejas, Florentino Fdez-Riverola:
Boosting biomedical document classification through the use of domain entity recognizers and semantic ontologies for document representation: The case of gluten bibliome. Neurocomputing 484: 223-237 (2022) - [j37]Guillermo Blanco, Anália Lourenço:
Optimism and pessimism analysis using deep learning on COVID-19 related twitter conversations. Inf. Process. Manag. 59(3): 102918 (2022) - 2021
- [j36]Martín Pérez-Pérez, Gilberto Igrejas, Florentino Fdez-Riverola, Anália Lourenço:
A framework to extract biomedical knowledge from gluten-related tweets: The case of dietary concerns in digital era. Artif. Intell. Medicine 118: 102131 (2021) - [j35]Beatriz T. Magalhães, Anália Lourenço, Nuno F. Azevedo:
Computational resources and strategies to assess single-molecule dynamics of the translation process in S. cerevisiae. Briefings Bioinform. 22(1): 219-231 (2021) - [j34]Augusto Ramoa, Jorge Condeço, Florentino Fdez-Riverola, Anália Lourenço:
HaemoKBS: A knowledge-based system for real-time, continuous categorisation of adverse reactions in blood recipients. Neurocomputing 423: 756-767 (2021) - [j33]Guillermo Blanco, Borja Sánchez, Lorena Ruiz, Florentino Fdez-Riverola, Abelardo Margolles, Anália Lourenço:
Computational Approach to the Systematic Prediction of Glycolytic Abilities: Looking Into Human Microbiota. IEEE ACM Trans. Comput. Biol. Bioinform. 18(6): 2302-2313 (2021) - 2020
- [j32]Guillermo Blanco, Roi Pérez-López, Florentino Fdez-Riverola, Anália Lourenço:
Understanding the social evolution of the Java community in Stack Overflow: A 10-year study of developer interactions. Future Gener. Comput. Syst. 105: 446-454 (2020) - [j31]Gael Pérez Rodríguez, Martín Pérez-Pérez, Florentino Fdez-Riverola, Anália Lourenço:
Mining the sociome for Health Informatics: Analysis of therapeutic lifestyle adherence of diabetic patients in Twitter. Future Gener. Comput. Syst. 110: 214-232 (2020) - [c28]Gael Pérez Rodríguez, Beatriz T. Magalhães, Nuno F. Azevedo, Anália Lourenço:
Application of Agent-Based Modelling to Simulate Ribosome Translation. PAAMS 2020: 200-211 - [c27]Martín Pérez-Pérez, Anália Lourenço, Gilberto Igrejas, Florentino Fdez-Riverola:
A Health-Related Study from Food Online Reviews. The Case of Gluten-Free Foods. PACBB 2020: 12-22 - [c26]Roi Pérez-López, Guillermo Blanco, Florentino Fdez-Riverola, Anália Lourenço:
The Activity of Bioinformatics Developers and Users in Stack Overflow. PACBB 2020: 23-31
2010 – 2019
- 2019
- [j30]Aitor Blanco-Míguez, Florentino Fdez-Riverola, Borja Sánchez, Anália Lourenço:
Resources and tools for the high-throughput, multi-omic study of intestinal microbiota. Briefings Bioinform. 20(3): 1032-1056 (2019) - [j29]Hugo López-Fernández, Aitor Blanco-Míguez, Florentino Fdez-Riverola, Borja Sánchez, Anália Lourenço:
DEWE: A novel tool for executing differential expression RNA-Seq workflows in biomedical research. Comput. Biol. Medicine 107: 197-205 (2019) - [j28]Paulo Maia, Gael Pérez Rodríguez, Martín Pérez-Pérez, Florentino Fdez-Riverola, Anália Lourenço, Nuno F. Azevedo:
Application of agent-based modelling to assess single-molecule transport across the cell envelope of E. coli. Comput. Biol. Medicine 107: 218-226 (2019) - [j27]Gael Pérez Rodríguez, Martín Pérez-Pérez, Florentino Fdez-Riverola, Anália Lourenço:
Online visibility of software-related web sites: The case of biomedical text mining tools. Inf. Process. Manag. 56(3): 565-583 (2019) - [j26]Aitor Blanco-Míguez, Guillermo Blanco, Alberto Gutiérrez-Jácome, Florentino Fdez-Riverola, Borja Sánchez, Anália Lourenço:
Computational prediction of the bioactivity potential of proteomes based on expert knowledge. J. Biomed. Informatics 91 (2019) - [j25]Martín Pérez-Pérez, Gael Pérez Rodríguez, Aitor Blanco-Míguez, Florentino Fdez-Riverola, Alfonso Valencia, Martin Krallinger, Anália Lourenço:
Next generation community assessment of biomedical entity recognition web servers: metrics, performance, interoperability aspects of BeCalm. J. Cheminformatics 11(1): 42:1-42:16 (2019) - 2017
- [j24]Aitor Blanco-Míguez, Alberto Gutiérrez-Jácome, Florentino Fdez-Riverola, Anália Lourenço, Borja Sánchez:
MAHMI database: a comprehensive MetaHit-based resource for the study of the mechanism of action of the human microbiota. Database J. Biol. Databases Curation 2017: baw157 (2017) - [j23]Martín Pérez-Pérez, Gael Pérez Rodríguez, Florentino Fdez-Riverola, Anália Lourenço:
Collaborative relation annotation and quality analysis in Markyt environment. Database J. Biol. Databases Curation 2017: bax090 (2017) - [j22]Aitor Blanco-Míguez, Florentino Fdez-Riverola, Anália Lourenço, Borja Sánchez:
P4P: a peptidome-based strain-level genome comparison web tool. Nucleic Acids Res. 45(Webserver-Issue): W265-W269 (2017) - [c25]Ander Intxaurrondo, Martín Pérez-Pérez, Gael Pérez Rodríguez, Jose Antonio López-Martín, Jesus Santamaría, Santiago de la Peña, Marta Villegas, Saber Ahmad Akhondi, Alfonso Valencia, Anália Lourenço, Martin Krallinger:
The Biomedical Abbreviation Recognition and Resolution (BARR) Track: Benchmarking, Evaluation and Importance of Abbreviation Recognition Systems Applied to Spanish Biomedical Abstracts. IberEval@SEPLN 2017: 230-246 - 2016
- [j21]Denise Gameiro, Martín Pérez-Pérez, Gael Pérez Rodríguez, Gonçalo Monteiro, Nuno F. Azevedo, Anália Lourenço:
Computational resources and strategies to construct single-molecule metabolic models of microbial cells. Briefings Bioinform. 17(5): 863-876 (2016) - [j20]Paula Jorge, Martín Pérez-Pérez, Gael Pérez Rodríguez, Florentino Fdez-Riverola, Maria Olívia Pereira, Anália Lourenço:
Construction of antimicrobial peptide-drug combination networks from scientific literature based on a semi-automated curation workflow. Database J. Biol. Databases Curation 2016 (2016) - [j19]Martín Pérez-Pérez, Gael Pérez Rodríguez, Obdulia Rabal, Miguel Vazquez, Julen Oyarzabal, Florentino Fdez-Riverola, Alfonso Valencia, Martin Krallinger, Anália Lourenço:
The Markyt visualisation, prediction and benchmark platform for chemical and gene entity recognition at BioCreative/CHEMDNER challenge. Database J. Biol. Databases Curation 2016 (2016) - [j18]Alberto G. Jácome, Florentino Fdez-Riverola, Anália Lourenço:
BIOMedical Search Engine Framework: Lightweight and customized implementation of domain-specific biomedical search engines. Comput. Methods Programs Biomed. 131: 63-77 (2016) - [j17]Aitor Blanco-Míguez, Jan P. Meier-Kolthoff, Alberto Gutiérrez-Jácome, Markus Göker, Florentino Fdez-Riverola, Borja Sánchez, Anália Lourenço:
Improving Phylogeny Reconstruction at the Strain Level Using Peptidome Datasets. PLoS Comput. Biol. 12(12) (2016) - 2015
- [j16]Nadine Castelhano Santos, Maria Olívia Pereira, Anália Lourenço:
Pathogenicity phenomena in three model systems: from network mining to emerging system-level properties. Briefings Bioinform. 16(1): 169-182 (2015) - [j15]Martín Pérez-Pérez, Daniel Glez-Peña, Florentino Fdez-Riverola, Anália Lourenço:
Marky: A tool supporting annotation consistency in multi-user and iterative document annotation projects. Comput. Methods Programs Biomed. 118(2): 242-251 (2015) - [j14]Gael Pérez Rodríguez, Daniel Glez-Peña, Nuno F. Azevedo, Maria Olívia Pereira, Florentino Fdez-Riverola, Anália Lourenço:
Enabling systematic, harmonised and large-scale biofilms data computation: The Biofilms Experiment Workbench. Comput. Methods Programs Biomed. 118(3): 309-321 (2015) - [j13]Ana Margarida Sousa, Maria Olívia Pereira, Anália Lourenço:
MorphoCol: An ontology-based knowledgebase for the characterisation of clinically significant bacterial colony morphologies. J. Biomed. Informatics 55: 55-63 (2015) - [c24]Alberto G. Jácome, Florentino Fdez-Riverola, Anália Lourenço:
A Novel Search Engine Supporting Specific Drug Queries and Literature Management. PACBB 2015: 99-106 - 2014
- [j12]Daniel Glez-Peña, Anália Lourenço, Hugo López-Fernández, Miguel Reboiro-Jato, Florentino Fdez-Riverola:
Web scraping technologies in an API world. Briefings Bioinform. 15(5): 788-797 (2014) - [j11]Ana Margarida Sousa, Maria Olívia Pereira, Nuno F. Azevedo, Anália Lourenço:
An harmonised vocabulary for communicating and interchanging Biofilms experimental results. J. Integr. Bioinform. 11(3) (2014) - [c23]Ana Margarida Sousa, Maria Olívia Pereira, Nuno F. Azevedo, Anália Lourenço:
Designing an Ontology Tool for the Unification of Biofilms Data. PACBB 2014: 41-48 - [c22]Gael Pérez Rodríguez, Daniel Glez-Peña, Nuno F. Azevedo, Maria Olívia Pereira, Florentino Fdez-Riverola, Anália Lourenço:
BEW: Bioinformatics Workbench for Analysis of Biofilms Experimental Data. PACBB 2014: 49-56 - [c21]Paula Jorge, Maria Olívia Pereira, Anália Lourenço:
Networking the Way towards Antimicrobial Combination Therapies. PACBB 2014: 201-206 - [c20]José Ferrnandes, Anália Lourenço:
Bringing Named Entity Recognition on Drupal Content Management System. PACBB 2014: 261-268 - [c19]Martín Pérez-Pérez, Daniel Glez-Peña, Florentino Fdez-Riverola, Anália Lourenço:
Marky: A Lightweight Web Tracking Tool for Document Annotation. PACBB 2014: 269-276 - [i3]Artemy Kolchinsky, Anália Lourenço, Heng-Yi Wu, Lang Li, Luis M. Rocha:
Extraction of Pharmacokinetic Evidence of Drug-drug Interactions from the Literature. CoRR abs/1412.0744 (2014) - 2013
- [c18]Artemy Kolchinsky, Anália Lourenço, Lang Li, Luis M. Rocha:
Evaluation of Linear Classifiers on Articles Containing Pharmacokinetic Evidence of Drug-Drug Interactions. Pacific Symposium on Biocomputing 2013: 409-420 - [c17]Alberto Simões, Anália Lourenço, José João Almeida:
Evaluating Web Site Structure Based on Navigation Profiles and Site Topology. WorldCIST 2013: 305-311 - 2012
- [j10]Lynette Hirschman, Gully A. P. C. Burns, Martin Krallinger, Cecilia N. Arighi, K. Bretonnel Cohen, Alfonso Valencia, Cathy H. Wu, Andrew Chatr-aryamontri, Karen G. Dowell, Eva Huala, Anália Lourenço, Robert S. Nash, Anne-Lise Veuthey, Thomas C. Wiegers, Andrew G. Winter:
Text mining for the biocuration workflow. Database J. Biol. Databases Curation 2012 (2012) - [j9]Anália Lourenço, Michael D. Conover, Andrew Wong, Azadeh Nematzadeh, Fengxia Pan, Hagit Shatkay, Luis M. Rocha:
Correction: A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature. BMC Bioinform. 13: 180 (2012) - [j8]Augusto Ramoa, Salomé Maia, Anália Lourenço:
A Rational Framework for Production Decision Making in Blood Establishments. J. Integr. Bioinform. 9(3) (2012) - [j7]Ana Margarida Sousa, Andreia Ferreira, Nuno F. Azevedo, Maria Olívia Pereira, Anália Lourenço:
Computational approaches to standard-compliant biofilm data for reliable analysis and integration. J. Integr. Bioinform. 9(3) (2012) - [c16]Anália Lourenço, Andreia Ferreira, Maria Olívia Pereira, Nuno F. Azevedo:
A Systematic Approach to the Interrogation and Sharing of Standardised Biofilm Signatures. PACBB 2012: 113-120 - [c15]Augusto Ramoa, Salomé Maia, Anália Lourenço:
SAD_BaSe: A Blood Bank Data Analysis Software. PACBB 2012: 165-171 - [c14]Ana Margarida Sousa, Anália Lourenço, Maria Olívia Pereira:
MorphoCol: A Powerful Tool for the Clinical Profiling of Pathogenic Bacteria. PACBB 2012: 181-188 - [i2]Artemy Kolchinsky, Anália Lourenço, Lang Li, Luis M. Rocha:
Evaluation of linear classifiers on articles containing pharmacokinetic evidence of drug-drug interactions. CoRR abs/1210.0734 (2012) - 2011
- [j6]Anália Lourenço, Sónia Carneiro, Miguel Rocha, Eugénio C. Ferreira, Isabel Rocha:
Challenges in integrating Escherichia coli molecular biology data. Briefings Bioinform. 12(2): 91-103 (2011) - [j5]Rafael Carreira, Sónia Carneiro, Rui Pereira, Miguel Rocha, Isabel Rocha, Eugénio C. Ferreira, Anália Lourenço:
Semantic annotation of biological concepts interplaying microbial cellular responses. BMC Bioinform. 12: 460 (2011) - [j4]Anália Lourenço, Michael D. Conover, Andrew Wong, Azadeh Nematzadeh, Fengxia Pan, Hagit Shatkay, Luis M. Rocha:
A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature. BMC Bioinform. 12(S-8): S12 (2011) - [j3]Anália Lourenço, Sónia Carneiro, José P. Pinto, Miguel Rocha, Eugénio C. Ferreira, Isabel Rocha:
A Study of the Short and Long-term Regulation of E. coli Metabolic Pathways. J. Integr. Bioinform. 8(3) (2011) - [c13]Anália Lourenço, Sónia Carneiro, José P. Pinto, Miguel Rocha, Eugénio C. Ferreira, Isabel Rocha:
Interpreting the Regulatory Interplay in E. coli Metabolic Pathways. PACBB 2011: 303-312 - [i1]Anália Lourenço, Michael D. Conover, Andrew Wong, Azadeh Nematzadeh, Fengxia Pan, Hagit Shatkay, Luis M. Rocha:
A Linear Classifier Based on Entity Recognition Tools and a Statistical Approach to Method Extraction in the Protein-Protein Interaction Literature. CoRR abs/1103.4090 (2011) - 2010
- [j2]Anália Lourenço, Rafael Carreira, Daniel Glez-Peña, José Ramón Méndez, Sónia Carneiro, Luis Mateus Rocha, Fernando Díaz, Eugénio C. Ferreira, Isabel Rocha, Florentino Fdez-Riverola, Miguel Rocha:
BioDR: Semantic indexing networks for biomedical document retrieval. Expert Syst. Appl. 37(4): 3444-3453 (2010)
2000 – 2009
- 2009
- [j1]Anália Lourenço, Rafael Carreira, Sónia Carneiro, Paulo Maia, Daniel Glez-Peña, Florentino Fdez-Riverola, Eugénio C. Ferreira, Isabel Rocha, Miguel Rocha:
@Note: A workbench for Biomedical Text Mining. J. Biomed. Informatics 42(4): 710-720 (2009) - [c12]Anália Lourenço, Sónia Carneiro, Eugénio C. Ferreira, Rafael Carreira, Luis M. Rocha, Daniel Glez-Peña, José Ramón Méndez, Florentino Fdez-Riverola, Fernando Díaz, Isabel Rocha, Miguel Rocha:
Biomedical Text Mining Applied to Document Retrieval and Semantic Indexing. IWANN (2) 2009: 954-963 - 2008
- [c11]Anália Lourenço, Rafael Carreira, Sónia Carneiro, Paulo Maia, Daniel Glez-Peña, Florentino Fdez-Riverola, Eugénio C. Ferreira, Isabel Rocha, Miguel Rocha:
A framework for the development of Biomedical Text Mining software tools. BIBE 2008: 1-6 - [c10]Rui Mendes, Anália Lourenço, Sónia Carneiro, Miguel Rocha, Isabel Rocha, Eugénio C. Ferreira:
A framework for the integrated analysis of metabolic and regulatory networks. BIBE 2008: 1-6 - [c9]José P. Pinto, Oscar Días, Anália Lourenço, Sónia Carneiro, Eugénio C. Ferreira, Isabel Rocha, Miguel Rocha:
Data Integration Issues in the Reconstruction of the Genome-Scale Metabolic Model of Zymomonas Mobillis. IWPACBB 2008: 92-101 - 2006
- [c8]Anália Lourenço, Orlando Belo:
Applying Clickstream Data Mining to Real-Time Web Crawler Detection and Containment Using ClickTips Platform. GfKl 2006: 351-358 - [c7]Anália Lourenço, Orlando Belo:
Catching web crawlers in the act. ICWE 2006: 265-272 - 2004
- [c6]Anália Lourenço, Orlando Belo:
Attenuating the Effect of Data Abnormalities on Data Warehouses. ICEIS (1) 2004: 411-415 - 2003
- [c5]Anália Lourenço, Orlando Belo:
Assessing Web Usage Profiles. ICWI 2003: 809-812 - [c4]Anália Lourenço, Orlando Belo:
Utilização de Agentes na Identificação e Resolução de Situações Anómales em Processos de Povoamento de Data Warehouses. JISBD 2003: 695-704 - 2001
- [c3]Anália Lourenço, Joaquim Gonçalves, Orlando Belo:
Agent-Based Knowledge Extraction Services Inside Enterprise Data Warehousing Systems Environments. DEXA Workshop 2001: 887-891 - [c2]Joaquim Gonçalves, Anália Lourenço, Orlando Belo:
Specializing Agents on Data Integration in Data Warehousing System Environment. ICEIS (1) 2001: 19-23 - [c1]Jose Velez, Anália Lourenço, Cristina Pechirra, Leonor Almeida:
Broadband access technologies. Workshop on Universal Accessibility of Ubiquitous Computing 2001: 56-59
Coauthor Index
Florentino Fernández Riverola
aka: Florentino Fdez-Riverola
aka: Florentino Fdez-Riverola
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