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Stefania Bortoluzzi
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2020 – today
- 2023
- [j15]Alessia Buratin, Stefania Bortoluzzi, Enrico Gaffo:
Systematic benchmarking of statistical methods to assess differential expression of circular RNAs. Briefings Bioinform. 24(1) (2023) - [j14]Anna Dal Molin, Caterina Tretti Parenzan, Enrico Gaffo, Cristina Borin, Elena Boldrin, Lueder H. Meyer, Geertruij te Kronnie, Silvia Bresolin, Stefania Bortoluzzi:
Discovery of fusion circular RNAs in leukemia with KMT2A::AFF1 rearrangements by the new software CircFusion. Briefings Bioinform. 24(1) (2023) - 2022
- [j13]Enrico Gaffo, Alessia Buratin, Anna Dal Molin, Stefania Bortoluzzi:
Sensitive, reliable and robust circRNA detection from RNA-seq with CirComPara2. Briefings Bioinform. 23(1) (2022) - [j12]Anna Dal Molin, Enrico Gaffo, Valeria Difilippo, Alessia Buratin, Caterina Tretti Parenzan, Silvia Bresolin, Stefania Bortoluzzi:
CRAFT: a bioinformatics software for custom prediction of circular RNA functions. Briefings Bioinform. 23(2) (2022) - [j11]Anna Dal Molin, Enrico Gaffo, Valeria Difilippo, Alessia Buratin, Caterina Tretti Parenzan, Silvia Bresolin, Stefania Bortoluzzi:
Correction to: CRAFT a bioinformatics software for custom prediction of circular RNA functions. Briefings Bioinform. 23(3) (2022) - 2021
- [j10]Andrea Binatti, Silvia Bresolin, Stefania Bortoluzzi, Alessandro Coppe:
iWhale: a computational pipeline based on Docker and SCons for detection and annotation of somatic variants in cancer WES data. Briefings Bioinform. 22(3) (2021)
2010 – 2019
- 2019
- [j9]Michele Bortolomeazzi, Enrico Gaffo, Stefania Bortoluzzi:
A survey of software tools for microRNA discovery and characterization using RNA-seq. Briefings Bioinform. 20(3): 918-930 (2019) - 2012
- [j8]Andrea Bisognin, Gabriele Sales, Alessandro Coppe, Stefania Bortoluzzi, Chiara Romualdi:
MAGIA2: from miRNA and genes expression data integrative analysis to microRNA-transcription factor mixed regulatory circuits (2012 update). Nucleic Acids Res. 40(Web-Server-Issue): 13-21 (2012) - 2010
- [j7]Gabriele Sales, Alessandro Coppe, Andrea Bisognin, Marta Biasiolo, Stefania Bortoluzzi, Chiara Romualdi:
MAGIA, a web-based tool for miRNA and Genes Integrated Analysis. Nucleic Acids Res. 38(Web-Server-Issue): 352-359 (2010) - [c1]Marta Biasiolo, Mattia Forcato, Lino Possamai, Francesco Ferrari, Luca Agnelli, Marta Lionetti, Katia Todoerti, Antonino Neri, Massimo Marchiori, Stefania Bortoluzzi, Silvio Bicciato:
Critical Analysis of Transcriptional and Post-Transcriptional Regulatory Networks in Multiple Myeloma. Pacific Symposium on Biocomputing 2010: 397-408
2000 – 2009
- 2009
- [j6]Andrea Bisognin, Alessandro Coppe, Francesco Ferrari, Davide Risso, Chiara Romualdi, Silvio Bicciato, Stefania Bortoluzzi:
A-MADMAN: Annotation-based microarray data meta-analysis tool. BMC Bioinform. 10 (2009) - 2007
- [j5]Francesco Ferrari, Stefania Bortoluzzi, Alessandro Coppe, Alexandra Sirota, Marilyn Safran, Michael Shmoish, Sergio Ferrari, Doron Lancet, Gian Antonio Danieli, Silvio Bicciato:
Novel definition files for human GeneChips based on GeneAnnot. BMC Bioinform. 8 (2007) - 2006
- [j4]Alessandro Coppe, Gian Antonio Danieli, Stefania Bortoluzzi:
REEF: searching REgionally Enriched Features in genomes. BMC Bioinform. 7: 453 (2006) - 2005
- [j3]Stefania Bortoluzzi, Alessandro Coppe, Andrea Bisognin, Cinzia Pizzi, Gian Antonio Danieli:
A multistep bioinformatic approach detects putative regulatory elements in gene promoters. BMC Bioinform. 6: 121 (2005) - 2004
- [j2]Andrea Bisognin, Stefania Bortoluzzi, Gian Antonio Danieli:
Detection of chromosomal regions showing differential gene expression in human skeletal muscle and in alveolar rhabdomyosarcoma. BMC Bioinform. 5: 68 (2004) - 2001
- [j1]Stefania Bortoluzzi, Fabio d'Alessi, Chiara Romualdi, Gian Antonio Danieli:
Differential expression of genes coding for ribosomal proteins in different human tissues. Bioinform. 17(12): 1152-1157 (2001)
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