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ORCIDJosé Carbonell
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2020 – today
- 2023
[c2]Marc Clascà
, Marta Garcia-Gasulla, Arnau Montagud, José Carbonell-Caballero, Alfonso Valencia:
Lessons Learned from a Performance Analysis and Optimization of a Multiscale Cellular Simulation. PASC 2023: 4:1-4:10- [i1]Marc Clascà, Marta Garcia-Gasulla, Arnau Montagud, José Carbonell-Caballero, Alfonso Valencia:
Lessons learned from a performance analysis and optimization of a multiscale cellular simulation. CoRR abs/2306.11544 (2023)
2010 – 2019
- 2019
- [j14]Alicia Amadoz, Marta R. Hidalgo, Cankut Çubuk, José Carbonell-Caballero, Joaquín Dopazo:
A comparison of mechanistic signaling pathway activity analysis methods. Briefings Bioinform. 20(5): 1655-1668 (2019) - 2017
- [j13]José Carbonell-Caballero, Alicia Amadoz, Roberto Alonso, Marta R. Hidalgo, Cankut Çubuk, David V. Conesa, Antonio López-Quílez, Joaquín Dopazo:
Reference genome assessment from a population scale perspective: an accurate profile of variability and noise. Bioinform. 33(22): 3511-3517 (2017) - 2016
- [j12]Francisco Salavert, Marta R. Hidalgo, Alicia Amadoz, Cankut Çubuk, Ignacio Medina, Daniel Crespo, José Carbonell-Caballero, Joaquín Dopazo:
Actionable pathways: interactive discovery of therapeutic targets using signaling pathway models. Nucleic Acids Res. 44(Webserver-Issue): W212-W216 (2016) - 2015
- [j11]Roberto Alonso, Francisco Salavert, Francisco García-García, José Carbonell-Caballero, Marta Bleda, Luz Garcia-Alonso, Alba Sanchis-Juan, Daniel Perez-Gil, Pablo Marín-García, Rubén Sánchez, Cankut Çubuk, Marta R. Hidalgo, Alicia Amadoz, Rosa D. Hernansaiz-Ballesteros, Alejandro Alemán, Joaquín Tárraga, David Montaner, Ignacio Medina, Joaquín Dopazo:
Babelomics 5.0: functional interpretation for new generations of genomic data. Nucleic Acids Res. 43(Webserver-Issue): W117-W121 (2015) - 2013
- [j10]Patricia Sebastián-León, José Carbonell, Francisco Salavert, Rubén Sánchez, Ignacio Medina, Joaquín Dopazo:
Inferring the functional effect of gene expression changes in signaling pathways. Nucleic Acids Res. 41(Webserver-Issue): 213-217 (2013) - 2012
- [j9]Fernando García-Alcalde, Konstantin Okonechnikov, José Carbonell, Luis M. Cruz, Stefan Götz, Sonia Tarazona, Joaquín Dopazo, Thomas F. Meyer, Ana Conesa:
Qualimap: evaluating next-generation sequencing alignment data. Bioinform. 28(20): 2678-2679 (2012) - 2011
- [j8]Rubén Sánchez, François Serra, Joaquín Tárraga, Ignacio Medina, José Carbonell, Luis Pulido, Alejandro de María, Salvador Capella-Gutiérrez, Jaime Huerta-Cepas, Toni Gabaldón, Joaquín Dopazo, Hernán Dopazo:
Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing. Nucleic Acids Res. 39(Web-Server-Issue): 470-474 (2011) - 2010
- [j7]Ignacio Medina, José Carbonell, Luis Pulido, Sara C. Madeira, Stefan Götz, Ana Conesa, Joaquín Tárraga, Alberto D. Pascual-Montano, Rubén Nogales-Cadenas, Javier Santoyo, Francisco García-García, Martina Marbà, David Montaner, Joaquín Dopazo:
Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling. Nucleic Acids Res. 38(Web-Server-Issue): 210-213 (2010) - [j6]María José Nueda, José Carbonell, Ignacio Medina, Joaquín Dopazo, Ana Conesa:
Serial Expression Analysis: a web tool for the analysis of serial gene expression data. Nucleic Acids Res. 38(Web-Server-Issue): 239-245 (2010)
2000 – 2009
- 2009
- [j5]Ignacio Medina, David Montaner, Nuria Bonifaci, Miguel Angel Pujana, José Carbonell, Joaquín Tárraga, Fátima Al-Shahrour, Joaquín Dopazo:
Gene set-based analysis of polymorphisms: finding pathways or biological processes associated to traits in genome-wide association studies. Nucleic Acids Res. 37(Web-Server-Issue): 340-344 (2009) - 2008
- [j4]José V. Manjón, José Carbonell-Caballero, Juan José Lull, Gracián García-Martí, Luis Martí-Bonmatí, Montserrat Robles:
MRI denoising using Non-Local Means. Medical Image Anal. 12(4): 514-523 (2008) - [j3]Joaquín Tárraga, Ignacio Medina, José Carbonell, Jaime Huerta-Cepas, Pablo Minguez, Eva Alloza, Fátima Al-Shahrour, Susana Vegas-Azcárate, Stefan Götz, Pablo Escobar, Francisco García-García, Ana Conesa, David Montaner, Joaquín Dopazo:
GEPAS, a web-based tool for microarray data analysis and interpretation. Nucleic Acids Res. 36(Web-Server-Issue): 308-314 (2008) - [j2]Fátima Al-Shahrour, José Carbonell, Pablo Minguez, Stefan Götz, Ana Conesa, Joaquín Tárraga, Ignacio Medina, Eva Alloza, David Montaner, Joaquín Dopazo:
Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments. Nucleic Acids Res. 36(Web-Server-Issue): 341-346 (2008) - 2007
- [j1]José V. Manjón, Juan José Lull, José Carbonell-Caballero, Gracián García-Martí, Luis Martí-Bonmatí, Montserrat Robles:
A nonparametric MRI inhomogeneity correction method. Medical Image Anal. 11(4): 336-345 (2007) - 2006
- [c1]Ignacio Blanquer, Vicente Hernández, Daniel Monleón, José Carbonell, David Moratal, Bernardo Celda, Montserrat Robles, Luis Martí-Bonmatí:
Using the Grid to Analyze the Pharmacokinetic Modelling after Contrast Administration in Dynamic MRI. HealthGrid 2006: 82-92
Coauthor Index
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