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Books and Theses
- 2015
[b1]Tobias Czauderna:
Methoden und Algorithmen für die Systems Biology Graphical Notation. Universitäts- und Landesbibliothek Sachsen-Anhalt, Halle (Saale), 2015
Journal Articles
- 2023
- [j25]Ilankaikone Senthooran
, Matthias Klapperstück, Gleb Belov, Tobias Czauderna, Kevin Leo, Mark Wallace, Michael Wybrow, Maria Garcia de la Banda:
Human-centred feasibility restoration in practice. Constraints An Int. J. 28(2): 203-243 (2023) - 2022
- [j24]Falk Schreiber, Tobias Czauderna:
Design considerations for representing systems biology information with the Systems Biology Graphical Notation. J. Integr. Bioinform. 19(2) (2022) - [j23]Michael Aichem, Karsten Klein, Tobias Czauderna, Dimitar Garkov, Jinxin Zhao, Jian Li, Falk Schreiber:
Towards a hybrid user interface for the visual exploration of large biomolecular networks using virtual reality. J. Integr. Bioinform. 19(4) (2022) - 2021
- [j22]Michael Aichem, Tobias Czauderna, Yan Zhu, Jinxin Zhao, Matthias Klapperstück, Karsten Klein, Jian Li, Falk Schreiber:
Visual exploration of large metabolic models. Bioinform. 37(23): 4460-4468 (2021) - 2020
- [j21]Frank T. Bergmann, Tobias Czauderna, Ugur Dogrusoz, Adrien Rougny, Andreas Dräger, Vasundra Touré, Alexander Mazein, Michael L. Blinov, Augustin Luna:
Systems biology graphical notation markup language (SBGNML) version 0.3. J. Integr. Bioinform. 17(2-3) (2020) - [j20]Falk Schreiber, Björn Sommer, Tobias Czauderna, Martin Golebiewski, Thomas E. Gorochowski, Michael Hucka, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Dagmar Waltemath:
Specifications of standards in systems and synthetic biology: status and developments in 2020. J. Integr. Bioinform. 17(2-3) (2020) - [j19]Kadek Ananta Satriadi, Barrett Ens, Maxime Cordeil, Tobias Czauderna, Bernhard Jenny:
Maps Around Me: 3D Multiview Layouts in Immersive Spaces. Proc. ACM Hum. Comput. Interact. 4(ISS): 201:1-201:20 (2020) - [j18]Ying Yang, Michael Wybrow, Yuan-Fang Li, Tobias Czauderna, Yongqun He:
OntoPlot: A Novel Visualisation for Non-hierarchical Associations in Large Ontologies. IEEE Trans. Vis. Comput. Graph. 26(1): 1140-1150 (2020) - [j17]Shoko Sawada, Takayuki Itoh, Takashi Misaka, Shigeru Obayashi, Tobias Czauderna, Kingsley Stephens:
Streamline pair selection for comparative flow field visualization. Vis. Comput. Ind. Biomed. Art 3: 20 (2020) - [j16]Tim Dwyer, Maxime Cordeil, Tobias Czauderna, Pari Delir Haghighi, Barrett Ens, Sarah Goodwin, Bernhard Jenny, Kim Marriott, Michael Wybrow:
The Data Visualisation and Immersive Analytics Research Lab at Monash University. Vis. Informatics 4(4): 41-49 (2020) - 2019
- [j15]Adrien Rougny, Vasundra Touré, Stuart L. Moodie, Irina Balaur, Tobias Czauderna, Hanna Borlinghaus, Ugur Dogrusoz, Alexander Mazein, Andreas Dräger, Michael L. Blinov, Alice Villéger, Robin Haw, Emek Demir, Huaiyu Mi, Anatoly A. Sorokin, Falk Schreiber, Augustin Luna:
Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0. J. Integr. Bioinform. 16(2) (2019) - [j14]Kaya Okada, Mitsuo Yoshida, Takayuki Itoh, Tobias Czauderna, Kingsley Stephens:
VR system for spatio-temporal visualization of tweet data and support of map exploration. Multim. Tools Appl. 78(23): 32849-32868 (2019) - 2018
- [j13]Matthias Klapperstück, Tobias Czauderna, Cagatay Goncu, Jaroslaw Glowacki, Tim Dwyer, Falk Schreiber, Kim Marriott:
ContextuWall: Multi-site collaboration using display walls. J. Vis. Lang. Comput. 46: 35-42 (2018) - 2016
- [j12]Dagmar Waltemath, Jonathan R. Karr, Frank T. Bergmann, Vijayalakshmi Chelliah, Michael Hucka, Marcus Krantz, Wolfram Liebermeister, Pedro Mendes, Chris J. Myers, Pinar Pir, Begum Alaybeyoglu, Naveen K. Aranganathan, Kambiz Baghalian, Arne T. Bittig, Paulo E. Pinto Burke, Matteo Cantarelli, Yin Hoon Chew, Rafael S. Costa, Joseph Cursons, Tobias Czauderna, Arthur P. Goldberg, Harold F. Gómez, Jens Hahn, Tuure Hameri, Daniel F. Hernandez Gardiol, Denis Kazakiewicz, Ilya Kiselev, Vincent Knight-Schrijver, Christian Knüpfer, Matthias König, Daewon Lee, Audald Lloret-Villas, Nikita Mandrik, J. Kyle Medley, Bertrand Moreau, Hojjat Naderi-Meshkin, Sucheendra K. Palaniappan, Daniel Priego-Espinosa, Martin Scharm, Mahesh Sharma, Kieran Smallbone, Natalie J. Stanford, Je-Hoon Song, Tom Theile, Milenko Tokic, Namrata Tomar, Vasundra Touré, Jannis Uhlendorf, Thawfeek M. Varusai, Leandro H. Watanabe, Florian Wendland, Markus Wolfien, James T. Yurkovich, Yan Zhu, Argyris Zardilis, Anna Zhukova, Falk Schreiber:
Toward Community Standards and Software for Whole-Cell Modeling. IEEE Trans. Biomed. Eng. 63(10): 2007-2014 (2016) - 2015
- [j11]Huaiyu Mi, Falk Schreiber, Stuart L. Moodie, Tobias Czauderna, Emek Demir, Robin Haw, Augustin Luna, Nicolas Le Novère, Anatoly A. Sorokin, Alice Villéger:
Systems Biology Graphical Notation: Activity Flow language Level 1 Version 1.2 . J. Integr. Bioinform. 12(2) (2015) - [j10]Anatoly A. Sorokin, Nicolas Le Novère, Augustin Luna, Tobias Czauderna, Emek Demir, Robin Haw, Huaiyu Mi, Stuart L. Moodie, Falk Schreiber, Alice Villéger:
Systems Biology Graphical Notation: Entity Relationship language Level 1 Version 2. J. Integr. Bioinform. 12(2) (2015) - 2013
- [j9]Tobias Czauderna, Michael Wybrow, Kim Marriott, Falk Schreiber:
Conversion of KEGG metabolic pathways to SBGN maps including automatic layout. BMC Bioinform. 14: 250 (2013) - [j8]Torsten Vogt, Tobias Czauderna, Falk Schreiber:
Translation of SBGN maps: Process Description to Activity Flow. BMC Syst. Biol. 7: 115 (2013) - [j7]Finja Büchel, Nicolas Rodriguez, Neil Swainston, Clemens Wrzodek, Tobias Czauderna, Roland Keller, Florian Mittag, Michael Schubert, Mihai Glont, Martin Golebiewski, Martijn P. van Iersel, Sarah M. Keating, Matthias Rall, Michael Wybrow, Henning Hermjakob, Michael Hucka, Douglas B. Kell, Wolfgang Müller, Pedro Mendes, Andreas Zell, Claudine Chaouiya, Julio Saez-Rodriguez, Falk Schreiber, Camille Laibe, Andreas Dräger, Nicolas Le Novère:
Path2Models: large-scale generation of computational models from biochemical pathway maps. BMC Syst. Biol. 7: 116 (2013) - 2012
- [j6]Martijn P. van Iersel, Alice Villéger, Tobias Czauderna, Sarah E. Boyd, Frank T. Bergmann, Augustin Luna, Emek Demir, Anatoly A. Sorokin, Ugur Dogrusöz, Yukiko Matsuoka, Akira Funahashi, Mirit I. Aladjem, Huaiyu Mi, Stuart L. Moodie, Hiroaki Kitano, Nicolas Le Novère, Falk Schreiber:
Software support for SBGN maps: SBGN-ML and LibSBGN. Bioinform. 28(15): 2016-2021 (2012) - [j5]Hendrik Rohn, Astrid Junker, Anja Hartmann, Eva Grafahrend-Belau, Hendrik Treutler, Matthias Klapperstück, Tobias Czauderna, Christian Klukas, Falk Schreiber:
VANTED v2: a framework for systems biology applications. BMC Syst. Biol. 6: 139 (2012) - [j4]Falk Schreiber, Christian Colmsee, Tobias Czauderna, Eva Grafahrend-Belau, Anja Hartmann, Astrid Junker, Björn H. Junker, Matthias Klapperstück, Uwe Scholz, Stephan Weise:
MetaCrop 2.0: managing and exploring information about crop plant metabolism. Nucleic Acids Res. 40(Database-Issue): 1173-1177 (2012) - 2011
- [j3]Anja Hartmann, Tobias Czauderna, Roberto Hoffmann, Nils Stein, Falk Schreiber:
HTPheno: An Image Analysis Pipeline for High-Throughput Plant Phenotyping. BMC Bioinform. 12: 148 (2011) - 2010
- [j2]Tobias Czauderna, Christian Klukas, Falk Schreiber:
Editing, validating and translating of SBGN maps. Bioinform. 26(18): 2340-2341 (2010) - [j1]Klaus Hippe, Christian Colmsee, Tobias Czauderna, Eva Grafahrend-Belau, Björn H. Junker, Christian Klukas, Uwe Scholz, Falk Schreiber, Stephan Weise:
Novel Developments of the MetaCrop Information System for Facilitating Systems Biological Approaches. J. Integr. Bioinform. 7(3) (2010)
Conference and Workshop Papers
- 2023
- [c17]Fanny Weidner, Laurenz Bischoff, Johannes Bätz, Robin Schöppach, Peter Meineke, Kevin Kambach, Jannick Mitsch, Andreas Motuzov, Martin Mieth, Andreas Schulz, Melissa Weidlich-Rau, Christian Roschke, Matthias Vodel, Alexander Thomas Kühn, Tobias Czauderna, Daniel Müssig, Manuel Heinzig, Jörg Lässig, Marc Ritter:
A VR Office Applying Modern Search and Filter Concepts for Knowledge Workers. HCI (17) 2023: 101-113 - 2022
- [c16]Kadek Ananta Satriadi, Jim Smiley, Barrett Ens, Maxime Cordeil, Tobias Czauderna, Benjamin Lee, Ying Yang, Tim Dwyer, Bernhard Jenny:
Tangible Globes for Data Visualisation in Augmented Reality. CHI 2022: 505:1-505:16 - 2021
- [c15]Kadek Ananta Satriadi, Barrett Ens, Tobias Czauderna, Maxime Cordeil, Bernhard Jenny:
Quantitative Data Visualisation on Virtual Globes. CHI 2021: 460:1-460:14 - [c14]Ilankaikone Senthooran, Matthias Klapperstück, Gleb Belov, Tobias Czauderna, Kevin Leo, Mark Wallace, Michael Wybrow, Maria Garcia de la Banda:
Human-Centred Feasibility Restoration. CP 2021: 49:1-49:18 - 2019
- [c13]Midori Yano, Takayuki Itoh, Yuusuke Tanaka, Daisuke Matsuoka, Fumiaki Araki, Tobias Czauderna, Kingsley Stephens:
Viewpoint Selection for Shape Comparison of Mode Water Regions in a VR Space. IV (1) 2019: 106-111 - [c12]Kadek Ananta Satriadi, Barrett Ens, Maxime Cordeil, Bernhard Jenny, Tobias Czauderna, Wesley Willett:
Augmented Reality Map Navigation with Freehand Gestures. VR 2019: 593-603 - 2018
- [c11]Gleb Belov, Tobias Czauderna, Maria Garcia de la Banda, Matthias Klapperstück, Ilankaikone Senthooran, Mitch Smith, Michael Wybrow, Mark Wallace:
Process Plant Layout Optimization: Equipment Allocation. CP 2018: 473-489 - [c10]Kaya Okada, Mitsuo Yoshida, Takayuki Itoh, Tobias Czauderna, Kingsley Stephens:
Spatio-Temporal Visualization of Tweet Data around Tokyo Disneyland Using VR. IUI Companion 2018: 47:1-47:2 - [c9]Kaya Okada, Mitsuo Yoshida, Takayuki Itoh, Tobias Czauderna, Kingsley Stephens:
VR System for Spatio-Temporal Visualization of Tweet Data. IV 2018: 91-95 - 2017
- [c8]Kadek Ananta Satriadi, Kingsley Stephens, Callum Atkinson, Maxime Cordeil, Tobias Czauderna:
Immersive Isosurface Visualisation for Engineering Datasets. BDVA 2017: 39-46 - [c7]Gleb Belov, Tobias Czauderna, Amel Dzaferovic, Maria Garcia de la Banda, Michael Wybrow, Mark Wallace:
An Optimization Model for 3D Pipe Routing with Flexibility Constraints. CP 2017: 321-337 - [c6]Björn Sommer, David G. Barnes, Sarah E. Boyd, Tom Chandler, Maxime Cordeil, Tobias Czauderna, Matthias Klapperstück, Karsten Klein, Toàn D. Nguyên, Hieu T. Nim, Kingsley Stephens, Dany Vohl, Stephen Jia Wang, Elliott Wilson, Yan Zhu, Jian Li, Jon McCormack, Kim Marriott, Falk Schreiber:
3D-Stereoscopic Immersive Analytics Projects at Monash University and University of Konstanz. SD&A 2017: 179-187 - [c5]Shoko Sawada, Takayuki Itoh, Takashi Misaka, Shigeru Obayashi, Tobias Czauderna, Kingsley Stephens:
Streamline Selection for Comparative Visualization of 3D Fluid Simulation Result. IV 2017: 268-273 - 2016
- [c4]Matthias Klapperstück, Tobias Czauderna, Cagatay Goncu, Jaroslaw Glowacki, Tim Dwyer, Falk Schreiber, Kim Marriott:
ContextuWall: Peer Collaboration Using (Large) Displays. BDVA 2016: 1-8 - [c3]Björn Sommer, Andreas Hamacher, Owen Kaluza, Tobias Czauderna, Matthias Klapperstück, Niklas Biere, Marco Civico, Bruce H. Thomas, David G. Barnes, Falk Schreiber:
Stereoscopic Space Map - Semi-immersive Configuration of 3D-stereoscopic Tours in Multi-display Environments. SD&A 2016: 1-9 - 2015
- [c2]Tom Chandler, Maxime Cordeil, Tobias Czauderna, Tim Dwyer, Jaroslaw Glowacki, Cagatay Goncu, Matthias Klapperstück, Karsten Klein, Kim Marriott, Falk Schreiber, Elliott Wilson:
Immersive Analytics. BDVA 2015: 73-80 - 2013
- [c1]Christian Colmsee, Tobias Czauderna, Eva Grafahrend-Belau, Anja Hartmann, Matthias Lange, Martin Mascher, Stephan Weise, Uwe Scholz, Falk Schreiber:
OPTIMAS-DW, MetaCrop and VANTED: A Case Study for Data Integration, Curation and Visualisation in Life Sciences. GI-Jahrestagung 2013: 1834-1840
Parts in Books or Collections
- 2018
- [p1]Tobias Czauderna, Jason Haga, Jinman Kim, Matthias Klapperstück, Karsten Klein, Torsten W. Kuhlen, Steffen Oeltze-Jafra, Björn Sommer, Falk Schreiber:
Immersive Analytics Applications in Life and Health Sciences. Immersive Analytics 2018: 289-330
Informal and Other Publications
- 2019
- [i1]Ying Yang, Michael Wybrow, Yuan-Fang Li, Tobias Czauderna, Yongqun He:
OntoPlot: A Novel Visualisation for Non-hierarchical Associations in Large Ontologies. CoRR abs/1908.00688 (2019)
Coauthor Index
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