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2020 – today
- 2020
[j19]Yash Khemchandani, Stephen O'Hagan, Soumitra Samanta, Neil Swainston, Timothy J. Roberts, Danushka Bollegala
, Douglas B. Kell:
DeepGraphMolGen, a multi-objective, computational strategy for generating molecules with desirable properties: a graph convolution and reinforcement learning approach. J. Cheminformatics 12(1): 53 (2020)
2010 – 2019
- 2018
- [j18]Pablo Carbonell, Jerry Wong, Neil Swainston, Eriko Takano, Nicholas J. Turner, Nigel S. Scrutton, Douglas B. Kell, Rainer Breitling, Jean-Loup Faulon:
Selenzyme: enzyme selection tool for pathway design. Bioinform. 34(12): 2153-2154 (2018) - [j17]Neil Swainston, Mark Dunstan, Adrian J. Jervis, Christopher J. Robinson, Pablo Carbonell, Alan R. Williams, Jean-Loup Faulon, Nigel S. Scrutton, Douglas B. Kell:
PartsGenie: an integrated tool for optimizing and sharing synthetic biology parts. Bioinform. 34(13): 2327-2329 (2018) - 2017
- [j16]Neil Swainston, Andrew Currin, Lucy Green, Rainer Breitling, Philip J. Day, Douglas B. Kell:
CodonGenie: optimised ambiguous codon design tools. PeerJ Comput. Sci. 3: e120 (2017) - [i1]Neil Swainston, Andrew Currin, Lucy Green, Rainer Breitling, Philip J. Day, Douglas B. Kell:
CodonGenie: optimised ambiguous codon design tools. PeerJ Prepr. 5: e2797 (2017) - 2016
- [j15]Neil Swainston, Janna Hastings, Adriano Dekker, Venkatesh Muthukrishnan, John W. May, Christoph Steinbeck, Pedro Mendes:
libChEBI: an API for accessing the ChEBI database. J. Cheminformatics 8(1): 11:1-11:6 (2016) - [j14]Janna Hastings, Gareth I. Owen, Adriano Dekker, Marcus Ennis, Namrata Kale, Venkatesh Muthukrishnan, Steve Turner, Neil Swainston, Pedro Mendes, Christoph Steinbeck:
ChEBI in 2016: Improved services and an expanding collection of metabolites. Nucleic Acids Res. 44(Database-Issue): 1214-1219 (2016) - 2015
- [c2]Janna Hastings, Neil Swainston, Venkatesh Muthukrishnan, Namrata Kale, Adriano Dekker, Gareth I. Owen, Steve Turner, Pedro Mendes, Christoph Steinbeck:
ChEBI for systems biology and metabolic modelling. ICBO 2015 - 2014
- [j13]Neil Swainston, Andrew Currin, Philip J. Day, Douglas B. Kell:
GeneGenie: optimized oligomer design for directed evolution. Nucleic Acids Res. 42(Webserver-Issue): 395-400 (2014) - 2013
- [j12]Finja Büchel, Nicolas Rodriguez, Neil Swainston, Clemens Wrzodek, Tobias Czauderna, Roland Keller, Florian Mittag, Michael Schubert, Mihai Glont, Martin Golebiewski, Martijn P. van Iersel, Sarah M. Keating, Matthias Rall, Michael Wybrow, Henning Hermjakob, Michael Hucka, Douglas B. Kell, Wolfgang Müller, Pedro Mendes, Andreas Zell, Claudine Chaouiya, Julio Saez-Rodriguez, Falk Schreiber, Camille Laibe, Andreas Dräger, Nicolas Le Novère:
Path2Models: large-scale generation of computational models from biochemical pathway maps. BMC Syst. Biol. 7: 116 (2013) - 2012
- [j11]Dave Lee, Kieran Smallbone, Warwick B. Dunn, Ettore Murabito, Catherine Winder, Douglas B. Kell, Pedro Mendes, Neil Swainston:
Improving metabolic flux predictions using absolute gene expression data. BMC Syst. Biol. 6: 73 (2012) - 2011
- [j10]Ines Thiele, Daniel R. Hyduke, Benjamin Steeb, Guy Fankam, Douglas K. Allen, Susanna Bazzani, Pep Charusanti, Feng-Chi Chen, Ronan M. T. Fleming, Chao A. Hsiung, Sigrid C. J. De Keersmaecker, Yu-Chieh Liao, Kathleen Marchal, Monica L. Mo, Emre Özdemir, Anu Raghunathan, Jennifer L. Reed, Sook-Il Shin, Sara Sigurbjörnsdóttir, Jonas Steinmann, Suresh Sudarsan, Neil Swainston, Inge M. Thijs, Karsten Zengler, Bernhard O. Palsson, Joshua N. Adkins, Dirk Bumann:
A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2. BMC Syst. Biol. 5: 8 (2011) - [j9]Neil Swainston, Kieran Smallbone, Pedro Mendes, Douglas B. Kell, Norman W. Paton:
The SuBliMinaL Toolbox: automating steps in the reconstruction of metabolic networks. J. Integr. Bioinform. 8(2) (2011) - 2010
- [j8]Peter Li, Joseph O. Dada, Daniel Jameson, Irena Spasic, Neil Swainston, Kathleen Carroll, Warwick B. Dunn, Farid Khan, Naglis Malys, Hanan L. Messiha, Evangelos Simeonidis, Dieter Weichart, Catherine Winder, Jill Wishart, David S. Broomhead, Carole A. Goble, Simon J. Gaskell, Douglas B. Kell, Hans V. Westerhoff, Pedro Mendes, Norman W. Paton:
Systematic integration of experimental data and models in systems biology. BMC Bioinform. 11: 582 (2010) - [j7]Kieran Smallbone, Evangelos Simeonidis, Neil Swainston, Pedro Mendes:
Towards a genome-scale kinetic model of cellular metabolism. BMC Syst. Biol. 4: 6 (2010) - [j6]Karin Radrich, Yoshimasa Tsuruoka, Paul D. Dobson, Albert Gevorgyan, Neil Swainston, Gino Baart, Jean-Marc Schwartz:
Integration of metabolic databases for the reconstruction of genome-scale metabolic networks. BMC Syst. Biol. 4: 114 (2010) - [j5]Paul D. Dobson, Kieran Smallbone, Daniel Jameson, Evangelos Simeonidis, Karin Lanthaler, Pinar Pir, Chuan Lu, Neil Swainston, Warwick B. Dunn, Paul Fisher, Duncan Hull, Marie Brown, Olusegun Oshota, Natalie J. Stanford, Douglas B. Kell, Ross D. King, Stephen G. Oliver, Robert D. Stevens, Pedro Mendes:
Further developments towards a genome-scale metabolic model of yeast. BMC Syst. Biol. 4: 145 (2010) - [c1]Neil Swainston, Daniel Jameson, Peter Li, Irena Spasic, Pedro Mendes, Norman W. Paton:
Integrative Information Management for Systems Biology. DILS 2010: 164-178
2000 – 2009
- 2009
- [j4]Neil Swainston, Pedro Mendes:
libAnnotationSBML: a library for exploiting SBML annotations. Bioinform. 25(17): 2292-2293 (2009) - [j3]Daniel Jameson, David A. Turner, John Ankers, Stephnie Kennedy, Sheila Ryan, Neil Swainston, Tony Griffiths, David G. Spiller, Stephen G. Oliver, Michael R. H. White, Douglas B. Kell, Norman W. Paton:
Information management for high content live cell imaging. BMC Bioinform. 10 (2009) - 2007
- [j2]Neil Swainston, Jennifer A. Siepen, Andrew R. Jones, Sarah R. Hart, Henning Hermjakob, Philip Jones, Simon J. Hubbard:
Pride Wizard: generation of standards compliant quantitative proteomics data. BMC Syst. Biol. 1(S-1): P27 (2007) - 2006
- [j1]Kevin L. Garwood, Christopher Garwood, Cornelia Hedeler, Tony Griffiths, Neil Swainston, Stephen G. Oliver, Norman W. Paton:
Model-driven user interfaces for bioinformatics data resources: regenerating the wheel as an alternative to reinventing it. BMC Bioinform. 7: 532 (2006)
Coauthor Index
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