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ORCIDJournal of Integrative Bioinformatics, Volume 7
Volume 7, Number 1, 2010
- Raed I. Hamed, Syed I. Ahson, Rafat Parveen:
A New Approach for Modelling Gene Regulatory Networks Using Fuzzy Petri Nets. - Dennis Heimann, Jens Nieschulze, Birgitta König-Ries
:
A flexible statistics web processing service - Added value for information systems for experiment data. - Herbert Thiele, Jörg Glandorf, Peter Hufnagel:
Bioinformatics Strategies in Life Sciences: From Data Processing and Data Warehousing to Biological Knowledge Extraction. - Benjamin Kormeier, Klaus Hippe, Thoralf Töpel, Ralf Hofestädt:
CardioVINEdb: a data warehouse approach for integration of life science data in cardiovascular diseases. - V. Mallika, K. C. Sivakumar, S. Jaichand, E. V. Soniya:
Kernel based machine learning algorithm for the efficient prediction of type III polyketide synthase family of proteins. - Debmalya Barh, Dattatraya Bhat, Cedric Viero:
miReg: a resource for microRNA regulation. - Su Yean Ong, Fui Ling Ng, Siti Suriawati Badai, Anton Yuryev, Maqsudul Alam:
Analysis and construction of pathogenicity island regulatory pathways in Salmonella enterica serovar Typhi. - Daniel Glez-Peña, Miguel Reboiro-Jato, Rubén Domínguez, Gonzalo Gómez-López, David G. Pisano, Florentino Fdez-Riverola:
PathJam: a new service for integrating biological pathway information. - Björn Sommer, Evgeny S. Tiys, Benjamin Kormeier, Klaus Hippe, Sebastian Janowski, Timofey V. Ivanisenko, Anatoly O. Bragin, Patrizio Arrigo, Pavel Demenkov, Alexey V. Kochetov, Vladimir A. Ivanisenko, Nikolay A. Kolchanov, Ralf Hofestädt:
Visualization and Analysis of a Cardio Vascular Disease- and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches. - Paola Lecca, Adaoha E. C. Ihekwaba, Lorenzo Dematté, Corrado Priami:
Stochastic simulation of the spatio-temporal dynamics of reaction-diffusion systems: the case for the bicoid gradient. - Raimo Franke, Fabian J. Theis, Steffen Klamt:
From Binary to Multivalued to Continuous Models: The Lac Operon as a Case Study.
Volume 7, Number 2, 2010
- Matthias Lange, Karl Spies, Joachim Bargsten, Gregor Haberhauer, Matthias Klapperstück, Michael Leps, Christian Weinel, Röbbe Wünschiers, Mandy Weißbach, Jens Stein, Uwe Scholz:
The LAILAPS Search Engine: Relevance Ranking in Life Science Databases. - Farhat N. Memon, Anne M. Owen, Olivia Sanchez-Graillet, Graham J. G. Upton, Andrew P. Harrison:
Identifying the impact of G-Quadruplexes on Affymetrix 3' Arrays using Cloud Computing. - Christian Klukas, Falk Schreiber:
Integration of -omics data and networks for biomedical research with VANTED. - Olivia Sanchez-Graillet, Maria A. Stalteri, Joanna Rowsell, Graham J. G. Upton, Andrew P. Harrison:
Using surveys of Affymetrix GeneChips to study antisense expression. - Benjamin Kormeier, Klaus Hippe, Patrizio Arrigo, Thoralf Töpel, Sebastian Janowski, Ralf Hofestädt:
Reconstruction of biological networks based on life science data integration. - (Withdrawn) Towards prediction and prioritization of disease genes by the modularity of human phenome-genome assembled network.
Volume 7, Number 3, 2010
- Stephan Symons, Christian Zipplies, Florian Battke, Kay Nieselt:
Integrative Systems Biology Visualization with MAYDAY. - Simon J. Cockell, Jochen Weile, Phillip W. Lord, Claire Wipat, Dmytro Andriychenko, Matthew R. Pocock, Darren J. Wilkinson, Malcolm Young, Anil Wipat:
An integrated dataset for in silico drug discovery. - Tobias Wittkop, Sven Rahmann, Jan Baumbach:
Efficient Online Transcription Factor Binding Site Adjustment by Integrating Transitive Graph Projection with MoRAine 2.0. - Matthias Lange, Karl Spies, Christian Colmsee, Steffen Flemming, Matthias Klapperstück, Uwe Scholz:
The LAILAPS Search Engine: A Feature Model for Relevance Ranking in Life Science Databases. - Giorgio Ghisalberti, Marco Masseroli, Luca Tettamanti:
Quality controls in integrative approaches to detect errors and inconsistencies in biological databases. - Vesna Memisevic, Tijana Milenkovic, Natasa Przulj:
An integrative approach to modeling biological networks. - Keywan Hassani-Pak, Roxane Legaie, Catherine Canevet, Hugo Antonius van den Berg, Jonathan D. Moore, Christopher J. Rawlings:
Enhancing Data Integration with Text Analysis to Find Proteins Implicated in Plant Stress Response. - Detlef Groth, Stefanie Hartmann, Martin Friemel, Natascha Hill, Stefan Muller, Albert J. Poustka, Georgia Panopoulou:
Data integration using scanners with SQL output - The Bioscanners project at sourceforge. - Rasmus H. Fogh, Wayne Boucher, John M. C. Ionides, Wim F. Vranken, Tim J. Stevens, Ernest D. Laue:
MEMOPS: Data modelling and automatic code generation.. - Ernest A. A. van Ophuizen, Jack A. M. Leunissen:
An evaluation of the performance of three semantic background knowledge sources in comparative anatomy. - Klaus Hippe, Christian Colmsee, Tobias Czauderna, Eva Grafahrend-Belau, Björn H. Junker, Christian Klukas, Uwe Scholz, Falk Schreiber, Stephan Weise:
Novel Developments of the MetaCrop Information System for Facilitating Systems Biological Approaches. - Da Qi, Ross D. King, Andrew L. Hopkins, G. Richard J. Bickerton, Larisa N. Soldatova:
An Ontology for Description of Drug Discovery Investigations. - Yanju Zhang, Fons J. Verbeek:
Comparison and Integration of Target Prediction Algorithms for microRNA Studies. - Mounia Belmamoune, Dome Potikanond, Fons J. Verbeek:
Mining and Analysing Spatio-Temporal Patterns of Gene Expression in an Integrative Database Framework. - Mahsa Behzadi, Aicha Demidem, Daniel Morvan, Laurent Schwartz, Georges Stepien, Jean-Marc Steyaert:
A Model of Phospholipid Biosynthesis in Tumor in Response to an Anticancer Agent in Vivo. - Hang-mao Lee, Karl J. Dietz, Ralf Hofestädt:
Prediction of thioredoxin and glutaredoxin target proteins by identifying reversibly oxidized cysteinyl residues. - Eugene V. Korotkov, Maria A. Korotkova:
Study of the triplet periodicity phase shifts in genes. - Bruno B. Schwenk, Joachim Selbig, Yehuda Ben-Zion, Matthias Holschneider:
ExPlanes: Exploring Planes in Triplet Data. - Syed Murtuza Baker, Kai Schallau, Björn H. Junker:
Comparison of different algorithms for simultaneous estimation of multiple parameters in kinetic metabolic models. - Wim De Mulder, Martin Kuiper, René K. Boel:
Clustering of gene expression profiles: creating initialization-independent clusterings by eliminating unstable genes. - Vesna Memisevic, Tijana Milenkovic, Natasa Przulj:
Complementarity of network and sequence information in homologous proteins. - Amy W. Butler, Sarah Cohen-Woods, Anne Farmer, Peter McGuffin, Cathryn M. Lewis:
Integrating Phenotypic Data For Depression. - Joanna Rowsell, Renata da Silva Camargo, William B. Langdon, Maria A. Stalteri, Andrew P. Harrison:
Uncovering the Expression Patterns of Chimeric Transcripts Using Surveys of Affymetrix GeneChips. - Andrea Calabria, Ettore Mosca, Federica Viti, Ivan Merelli, Luciano Milanesi:
SNPRanker: a tool for identification and scoring of SNPs associated to target genes. - Matteo Re, Giorgio Valentini:
Noise tolerance of Multiple Classifier Systems in data integration-based gene function prediction.
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