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ORCIDVladimir A. Ivanisenko
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2020 – today
- 2024
[j25]Evgeniya A. Antropova
, Tamara M. Khlebodarova, Pavel S. Demenkov, Anastasiia R. Volianskaia, Artur S. Venzel, Nikita V. Ivanisenko, Alexandr D. Gavrilenko, Timofey V. Ivanisenko, Anna V. Adamovskaya, Polina M. Revva, Nikolay A. Kolchanov, Inna N. Lavrik, Vladimir A. Ivanisenko:
Reconstruction of the regulatory hypermethylation network controlling hepatocellular carcinoma development during hepatitis C viral infection. J. Integr. Bioinform. 20(3) (2024)- [j24]Yulia E. Uvarova, Pavel S. Demenkov, Irina N. Kuzmicheva, Artur S. Venzel, Elena L. Mischenko, Timofey V. Ivanisenko, Vadim M. Efimov, Svetlana V. Bannikova, Asya R. Vasilieva, Vladimir A. Ivanisenko, Sergey E. Peltek:
Accurate noise-robust classification of Bacillus species from MALDI-TOF MS spectra using a denoising autoencoder. J. Integr. Bioinform. 20(3) (2024) - [j23]Haoyu Chao, Shilong Zhang, Yueming Hu, Qingyang Ni, Saige Xin, Liang Zhao, Vladimir A. Ivanisenko, Yuriy L. Orlov, Ming Chen:
Integrating omics databases for enhanced crop breeding. J. Integr. Bioinform. 20(4) (2024) - 2020
- [j22]Timofey V. Ivanisenko, Olga V. Saik, Pavel S. Demenkov, Nikita V. Ivanisenko, Alexander N. Savostyanov, Vladimir A. Ivanisenko:
ANDDigest: a new web-based module of ANDSystem for the search of knowledge in the scientific literature. BMC Bioinform. 21-S(11): 228 (2020)
2010 – 2019
- 2019
- [j21]Vladimir A. Ivanisenko, Pavel S. Demenkov, Timofey V. Ivanisenko, Elena L. Mishchenko, Olga V. Saik:
A new version of the ANDSystem tool for automatic extraction of knowledge from scientific publications with expanded functionality for reconstruction of associative gene networks by considering tissue-specific gene expression. BMC Bioinform. 20-S(1): 5-15 (2019) - 2018
- [j20]Elena Yu. Bragina, Irina A. Goncharova, Anna F. Garaeva, Evgeniy V. Nemerov, Anastasija A. Babovskaya, Andrey B. Karpov, Yulia V. Semenova, Irina Z. Zhalsanova, Densema E. Gomboeva, Olga V. Saik, Olga I. Zolotareva, Vladimir A. Ivanisenko, Victor E. Dosenko, Ralf Hofestädt, Maxim B. Freidin:
Molecular Relationships between Bronchial Asthma and Hypertension as Comorbid Diseases. J. Integr. Bioinform. 15(4) (2018) - [j19]Tatiana Drevytska, Roman Morhachov, Lesya Tumanovska, Georgiy Portnichenko, Vasyl Nagibin, Oleksiy Boldyriev, Tatiana Lapikova-Bryhinska, Veronika Gurianova, Borys Dons'koi, Maxim B. Freidin, Vladimir A. Ivanisenko, Elena Yu. Bragina, Ralf Hofestädt, Victor E. Dosenko:
shRNA-Induced Knockdown of a Bioinformatically Predicted Target IL10 Influences Functional Parameters in Spontaneously Hypertensive Rats with Asthma. J. Integr. Bioinform. 15(4) (2018) - [j18]Ralf Hofestädt, Vladimir A. Ivanisenko:
Integrative Analysis of Co-Morbid Multifactorial Diseases. J. Integr. Bioinform. 15(4) (2018) - [j17]Olga V. Saik, Pavel S. Demenkov, Timofey V. Ivanisenko, Elena Yu. Bragina, Maxim B. Freidin, Victor E. Dosenko, Olga I. Zolotareva, Evgeniy L. Choynzonov, Ralf Hofestädt, Vladimir A. Ivanisenko:
Search for New Candidate Genes Involved in the Comorbidity of Asthma and Hypertension Based on Automatic Analysis of Scientific Literature. J. Integr. Bioinform. 15(4) (2018) - [j16]Alban Shoshi, Ralf Hofestädt, Olga I. Zolotareva, Marcel Friedrichs, Alex Maier, Vladimir A. Ivanisenko, Victor E. Dosenko, Elena Yu. Bragina:
GenCoNet - A Graph Database for the Analysis of Comorbidities by Gene Networks. J. Integr. Bioinform. 15(4) (2018) - 2017
- [j15]Irina V. Medvedeva, Pavel S. Demenkov, Vladimir A. Ivanisenko:
SITEX 2.0: Projections of protein functional sites on eukaryotic genes. Extension with orthologous genes. J. Bioinform. Comput. Biol. 15(2): 1650044:1-1650044:14 (2017) - [j14]Olga V. Petrovskaya, Evgeny D. Petrovskiy, Inna N. Lavrik, Vladimir A. Ivanisenko:
A study of structural properties of gene network graphs for mathematical modeling of integrated mosaic gene networks. J. Bioinform. Comput. Biol. 15(2): 1650045:1-1650045:14 (2017) - 2015
- [j13]Vladimir A. Ivanisenko, Olga V. Saik, Nikita V. Ivanisenko, Evgeny S. Tiys, Timofey V. Ivanisenko, Pavel S. Demenkov, Nikolay A. Kolchanov:
ANDSystem: an Associative Network Discovery System for automated literature mining in the field of biology. BMC Syst. Biol. 9(S-2): S2 (2015) - [j12]Andrey S. Glotov, Evgeny S. Tiys, Elena S. Vashukova, Vladimir S. Pakin, Pavel S. Demenkov, Olga V. Saik, Timofey V. Ivanisenko, Olga N. Arzhanova, Elena V. Mozgovaya, Marina S. Zainulina, Nikolay A. Kolchanov, Vladislav S. Baranov, Vladimir A. Ivanisenko:
Molecular association of pathogenetic contributors to pre-eclampsia (pre-eclampsia associome). BMC Syst. Biol. 9(S-2): S4 (2015) - [j11]Irina M. Larina, Lyudmila Kh. Pastushkova, Evgeny S. Tiys, Kirill S. Kireev, Alexey S. Kononikhin, Natalia L. Starodubtseva, Igor A. Popov, Marc-Antoine Custaud, Igor V. Dobrokhotov, Evgeny N. Nikolaev, Nikolay A. Kolchanov, Vladimir A. Ivanisenko:
Permanent proteins in the urine of healthy humans during the Mars-500 experiment. J. Bioinform. Comput. Biol. 13(1): 1540001:1-1540001:17 (2015) - 2014
- [p1]Timofey V. Ivanisenko, Pavel S. Demenkov, Vladimir A. Ivanisenko:
Text Mining on PubMed. Approaches in Integrative Bioinformatics 2014: 161-170 - 2013
- [j10]Björn Sommer, Benjamin Kormeier, Pavel Demenkov, Patrizio Arrigo, Klaus Hippe, Özgür Ates, Alexey V. Kochetov, Vladimir A. Ivanisenko, Nikolay A. Kolchanov, Ralf Hofestädt:
Subcellular Localization Charts: a New Visual Methodology for the Semi-Automatic Localization of protein-Related Data Sets. J. Bioinform. Comput. Biol. 11(1) (2013) - [c2]Konstantin Kozlov, Nikita Ivanisenko, Vladimir A. Ivanisenko, Nikolay A. Kolchanov, Maria Samsonova, Alexander M. Samsonov:
Enhanced Differential Evolution Entirely Parallel Method for Biomedical Applications. PaCT 2013: 409-416 - 2012
- [j9]Nicolas Turenne, Evgeny S. Tiys, Vladimir A. Ivanisenko, Nikolay Yudin, Elena Ignatieva, Damien Valour, Séverine A. Degrelle, Isabelle Hue:
Finding biomarkers in non-model species: literature mining of transcription factors involved in bovine embryo development. BioData Min. 5: 12 (2012) - [j8]Pavel Demenkov, Timofey V. Ivanisenko, Nikolay A. Kolchanov, Vladimir A. Ivanisenko:
ANDVisio: A new tool for graphic visualization and analysis of literature mined associative gene networks in the ANDSystem. Silico Biol. 11(3-4): 149-161 (2012) - [j7]Irina V. Medvedeva, Pavel Demenkov, Nikolay A. Kolchanov, Vladimir A. Ivanisenko:
SitEx: a computer system for analysis of projections of protein functional sites on eukaryotic genes. Nucleic Acids Res. 40(Database-Issue): 278-283 (2012) - 2010
- [j6]Björn Sommer, Evgeny S. Tiys, Benjamin Kormeier, Klaus Hippe, Sebastian Janowski, Timofey V. Ivanisenko, Anatoly O. Bragin, Patrizio Arrigo, Pavel Demenkov, Alexey V. Kochetov, Vladimir A. Ivanisenko, Nikolay A. Kolchanov, Ralf Hofestädt:
Visualization and Analysis of a Cardio Vascular Disease- and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches. J. Integr. Bioinform. 7(1) (2010)
2000 – 2009
- 2007
- [j5]Sergey S. Pintus, Eduard S. Fomin, Ivan S. Oshurkov, Vladimir A. Ivanisenko:
Phylogenetic Analysis of the p53 and p63/p73 Gene Families. Silico Biol. 7(3): 319-332 (2007) - [j4]Elena L. Mishchenko, Kirill D. Bezmaternykh, Vitali A. Likhoshvai, Alexander V. Ratushny, Tamara M. Khlebodarova, Natalia Yu. Sournina, Vladimir A. Ivanisenko, Nikolay A. Kolchanov:
Mathematical Model for Suppression of Subgenomic Hepatitis C Virus RNA Replication in Cell Culture. J. Bioinform. Comput. Biol. 5(2b): 593-609 (2007) - [c1]Irina Medvedeva, Pavel Demenkov, Vladimir A. Ivanisenko, Nikolay A. Kolchanov:
Analysis of Protein Functional Site Distribution on Gene Structure. BIOCOMP 2007: 452-455 - 2005
- [j3]Vladimir A. Ivanisenko, Sergey S. Pintus, Dmitry A. Grigorovich, Nikolay A. Kolchanov:
PDBSite: a database of the 3D structure of protein functional sites. Nucleic Acids Res. 33(Database-Issue): 183-187 (2005) - [j2]Vladimir A. Ivanisenko, Alexey M. Eroshkin, Nikolay A. Kolchanov:
WebProAnalyst: an interactive tool for analysis of quantitative structure-activity relationships in protein families. Nucleic Acids Res. 33(Web-Server-Issue): 99-104 (2005) - 2004
- [j1]Vladimir A. Ivanisenko, Sergey S. Pintus, Dmitry A. Grigorovich, Nikolay A. Kolchanov:
PDBSiteScan: a program for searching for active, binding and posttranslational modification sites in the 3D structures of proteins. Nucleic Acids Res. 32(Web-Server-Issue): 549-554 (2004)
Coauthor Index
aka: Pavel S. Demenkov
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