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ORCIDEdward C. Uberbacher
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2010 – 2019
- 2016
[j17]Steven W. Paugh, David R. Coss, Ju Bao, Lucas T. Laudermilk
, Christy R. Grace, Antonio M. Ferreira, M. Brett Waddell, Granger Ridout, Deanna Naeve, Michael R. Leuze, Philip F. LoCascio, John C. Panetta, Mark R. Wilkinson, Ching-Hon Pui, Clayton W. Naeve, Edward C. Uberbacher, Erik J. Bonten, William E. Evans:
MicroRNAs Form Triplexes with Double Stranded DNA at Sequence-Specific Binding Sites; a Eukaryotic Mechanism via which microRNAs Could Directly Alter Gene Expression. PLoS Comput. Biol. 12(2) (2016)- 2012
- [j16]Mustafa H. Syed, Tatiana V. Karpinets, Morey Parang, Michael R. Leuze, Byung-Hoon Park, Doug Hyatt, Steven D. Brown, Steve Moulton, Michael D. Galloway, Edward C. Uberbacher:
BESC knowledgebase public portal. Bioinform. 28(5): 750-751 (2012) - [j15]Doug Hyatt, Philip F. LoCascio, Loren J. Hauser, Edward C. Uberbacher:
Gene and translation initiation site prediction in metagenomic sequences. Bioinform. 28(17): 2223-2230 (2012) - 2010
- [j14]Tatiana V. Karpinets, Margaret F. Romine, Denise Schmoyer, Guruprasad Kora, Mustafa H. Syed, Michael R. Leuze, Margrethe H. Serres, Byung-Hoon Park, Nagiza F. Samatova, Edward C. Uberbacher:
Shewanella knowledgebase: integration of the experimental data and computational predictions suggests a biological role for transcription of intergenic regions. Database J. Biol. Databases Curation 2010 (2010)
2000 – 2009
- 2003
- [j13]Chandrasegaran Narasimhan, Philip F. LoCascio, Edward C. Uberbacher:
Background rareness-based iterative multiple sequence alignment algorithm for regulatory element detection. Bioinform. 19(15): 1952-1963 (2003) - [c12]Marvin Frazier, David Thomassen, Aristides Patrinos, Gary Johnson, Carl Edward Oliver, Edward C. Uberbacher:
Stepping Up the Pace of Discovery: the Genomes to Life Program. CSB 2003: 2-9 - [c11]Edward C. Uberbacher, David Thomassen, Aristides Patrinos, Gary Johnson, Carl Edward Oliver, Marvin Frazier:
Computing for the DOE Genomes to Life Program. CSB 2003: 32 - [c10]Jane Razumovskaya, Victor Olman, Dong Xu, Edward C. Uberbacher, Nathan Verberkmoes, Ying Xu:
A Computational Method for Assessing Peptide-Identification Reliability in Tandem Mass Spectrometry Analysis with SEQUEST. CSB 2003: 421-423 - 2000
- [j12]Dong Xu, Michael A. Unseren, Ying Xu, Edward C. Uberbacher:
Sequence-structure specificity of a knowledge based energy function at the secondary structure level. Bioinform. 16(3): 269-285 (2000)
1990 – 1999
- 1998
- [j11]Ying Xu, Dong Xu, Edward C. Uberbacher:
An Efficient Computational Method for Globally Optimal Threading. J. Comput. Biol. 5(3): 597-614 (1998) - [j10]Ying Xu, Victor Olman, Edward C. Uberbacher:
A segmentation algorithm for noisy images: Design and evaluation. Pattern Recognit. Lett. 19(13): 1213-1224 (1998) - [c9]Ying Xu, Dong Xu, Edward C. Uberbacher:
A new method for modeling and solving the protein fold recognition problem (extended abstract). RECOMB 1998: 285-292 - 1997
- [j9]Ying Xu, Edward C. Uberbacher:
2D image segmentation using minimum spanning trees. Image Vis. Comput. 15(1): 47-57 (1997) - [j8]Ying Xu, Edward C. Uberbacher:
Automated Gene Identification in Large-Scale Genomic Sequences. J. Comput. Biol. 4(3): 325-338 (1997) - [c8]Ying Xu, Richard J. Mural, Edward C. Uberbacher:
Inferring Gene Structures in Genomic Sequences Using Pattern Recognition and Expressed Sequence Tags. ISMB 1997: 344-353 - [c7]Ying Xu, Edward C. Uberbacher:
Reference-based gene model prediction on DNA contigs (extended abstract). RECOMB 1997: 330-336 - 1996
- [j7]Xiaojun Guan, Edward C. Uberbacher:
Alignments of DNA and protein sequences containing frameshift errors. Comput. Appl. Biosci. 12(1): 31-40 (1996) - [j6]Ying Xu, Edward C. Uberbacher:
A polynomial-time algorithm for a class of protein threading problems. Comput. Appl. Biosci. 12(6): 511-517 (1996) - [j5]Sherri Matis, Ying Xu, Manesh J. Shah, Xiaojun Guan, J. Ralph Einstein, Richard J. Mural, Edward C. Uberbacher:
Detection of RNA Polymerase II Promoters and Polyadenylation Sites in Human DNA Sequence. Comput. Chem. 20(1): 135-140 (1996) - [j4]Ying Xu, Richard J. Mural, Edward C. Uberbacher:
An Iterative Algorithm for Correcting Sequencing Errors in DNA Coding Regions. J. Comput. Biol. 3(3): 333-344 (1996) - [j3]Ying Xu, Richard J. Mural, J. Ralph Einstein, Manesh B. Shah, Edward C. Uberbacher:
GRAIL: a multi-agent neural network system for gene identification. Proc. IEEE 84(10): 1544-1552 (1996) - [c6]Ying Xu, Edward C. Uberbacher:
Gene Prediction by Pattern Recognition and Homology Search. ISMB 1996: 241-251 - 1995
- [j2]Ying Xu, Richard J. Mural, Edward C. Uberbacher:
Correcting sequencing errors in DNA coding regions using a dynamic programming approach. Comput. Appl. Biosci. 11(2): 117-124 (1995) - [c5]Sherri Matis, Howard Doyle, Ignazio Marino, Richard J. Mural, Edward C. Uberbacher:
Use of Neural Networks for Prediction of Graft Failure following Liver Transplantation. CBMS 1995: 133- - [c4]Xiaojun Guan, Richard J. Mural, Edward C. Uberbacher:
Sequence comparison on a cluster of workstations using the PVM system. IPPS 1995: 190-195 - [c3]Mark Craven, Richard J. Mural, Loren J. Hauser, Edward C. Uberbacher:
Predicting Protein Folding Classes without Overly Relying on Homology. ISMB 1995: 98-106 - 1994
- [j1]Ying Xu, Richard J. Mural, Edward C. Uberbacher:
Constructing gene models from accurately predicted exons: an application of dynamic programming. Comput. Appl. Biosci. 10(6): 613-623 (1994) - [c2]Yin Xu, J. Ralph Einstein, Richard J. Mural, Manesh J. Shah, Edward C. Uberbacher:
An Improved System for Exon Recognition and Gene Modeling in Human DNA Sequence. ISMB 1994: 376- - 1991
- [c1]Xiaojun Guan, Richard J. Mural, Reinhold Mann, Edward C. Uberbacher:
On Parallel Search of DNA Sequence Databases. PP 1991: 332-337
Coauthor Index
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