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Journal Articles
- 2022
[j35]Yifan Zhao
, Xian Yang, Carolina Bolnykh, Steve Harenberg, Nodirbek Korchiev, Saavan Raj Yerramsetty, Bhanu Prasad Vellanki, Ramakanth Kodumagulla, Nagiza F. Samatova:
Predictive models with end user preference. Stat. Anal. Data Min. 15(1): 69-82 (2022)- 2020
- [j34]Sergey V. Meleshko, Nagiza F. Samatova:
Group classification of the two-dimensional shallow water equations with the beta-plane approximation of coriolis parameter in Lagrangian coordinates. Commun. Nonlinear Sci. Numer. Simul. 90: 105337 (2020) - 2017
- [j33]Wenbin Chen, William Hendrix, Nagiza F. Samatova:
The Application of the Weighted k-Partite Graph Problem to the Multiple Alignment for Metabolic Pathways. J. Comput. Biol. 24(12): 1195-1211 (2017) - [j32]Anuj Karpatne, Gowtham Atluri, James H. Faghmous, Michael S. Steinbach, Arindam Banerjee, Auroop R. Ganguly, Shashi Shekhar, Nagiza F. Samatova, Vipin Kumar:
Theory-Guided Data Science: A New Paradigm for Scientific Discovery from Data. IEEE Trans. Knowl. Data Eng. 29(10): 2318-2331 (2017) - 2016
- [j31]Wenbin Chen, Nagiza F. Samatova, Matthias F. Stallmann, William Hendrix, Weiqin Ying:
On size-constrained minimum s-t cut problems and size-constrained dense subgraph problems. Theor. Comput. Sci. 609: 434-442 (2016) - 2015
- [j30]Wenbin Chen, Matthew C. Schmidt, Wenhong Tian, Nagiza F. Samatova, Shaohong Zhang:
An efficient algorithm for pairwise local alignment of protein interaction networks. J. Bioinform. Comput. Biol. 13(2): 1550003:1-1550003:14 (2015) - 2014
- [j29]Sriram Lakshminarasimhan, Xiaocheng Zou, David A. Boyuka II, Saurabh V. Pendse, John Jenkins, Venkatram Vishwanath, Michael E. Papka, Scott Klasky, Nagiza F. Samatova:
DIRAQ: scalable in situ data- and resource-aware indexing for optimized query performance. Clust. Comput. 17(4): 1101-1119 (2014) - [j28]James H. Faghmous, Arindam Banerjee, Shashi Shekhar, Michael S. Steinbach, Vipin Kumar, Auroop R. Ganguly, Nagiza F. Samatova:
Theory-Guided Data Science for Climate Change. Computer 47(11): 74-78 (2014) - [j27]Qing Liu, Jeremy Logan, Yuan Tian, Hasan Abbasi, Norbert Podhorszki, Jong Youl Choi, Scott Klasky, Roselyne Tchoua, Jay F. Lofstead, Ron A. Oldfield, Manish Parashar, Nagiza F. Samatova, Karsten Schwan, Arie Shoshani, Matthew Wolf, Kesheng Wu, Weikuan Yu:
Hello ADIOS: the challenges and lessons of developing leadership class I/O frameworks. Concurr. Comput. Pract. Exp. 26(7): 1453-1473 (2014) - [j26]Wenbin Chen, Zhengzhang Chen, Nagiza F. Samatova, Lingxi Peng, Jianxiong Wang, Maobin Tang:
Solving the maximum duo-preservation string mapping problem with linear programming. Theor. Comput. Sci. 530: 1-11 (2014) - [j25]John Jenkins, James Dinan, Pavan Balaji, Tom Peterka, Nagiza F. Samatova, Rajeev Thakur:
Processing MPI Derived Datatypes on Noncontiguous GPU-Resident Data. IEEE Trans. Parallel Distributed Syst. 25(10): 2627-2637 (2014) - 2013
- [j24]Sriram Lakshminarasimhan, Neil Shah, Stéphane Ethier, Seung-Hoe Ku, Choong-Seock Chang, Scott Klasky, Robert Latham, Robert B. Ross, Nagiza F. Samatova:
ISABELA for effective in situ compression of scientific data. Concurr. Comput. Pract. Exp. 25(4): 524-540 (2013) - [j23]Zhengzhang Chen, William Hendrix, Hang Guan, Isaac K. Tetteh, Alok N. Choudhary, Fredrick H. M. Semazzi, Nagiza F. Samatova:
Discovery of extreme events-related communities in contrasting groups of physical system networks. Data Min. Knowl. Discov. 27(2): 225-258 (2013) - [j22]Jaya Kawale, Stefan Liess, Arjun Kumar, Michael S. Steinbach, Peter K. Snyder, Vipin Kumar, Auroop R. Ganguly, Nagiza F. Samatova, Fredrick H. M. Semazzi:
A graph-based approach to find teleconnections in climate data. Stat. Anal. Data Min. 6(3): 158-179 (2013) - [j21]John Jenkins, Isha Arkatkar, Sriram Lakshminarasimhan, David A. Boyuka II, Eric R. Schendel, Neil Shah, Stéphane Ethier, Choong-Seock Chang, Jackie Chen, Hemanth Kolla, Scott Klasky, Robert B. Ross, Nagiza F. Samatova:
ALACRITY: Analytics-Driven Lossless Data Compression for Rapid In-Situ Indexing, Storing, and Querying. Trans. Large Scale Data Knowl. Centered Syst. 10: 95-114 (2013) - 2012
- [j20]Zhengzhang Chen, Kanchana Padmanabhan, Andrea M. Rocha, Yekaterina Shpanskaya, James R. Mihelcic, Kathleen Scott, Nagiza F. Samatova:
Spice: discovery of phenotype-determining component interplays. BMC Syst. Biol. 6: 40 (2012) - [j19]Zhengzhang Chen, William Hendrix, Nagiza F. Samatova:
Community-based anomaly detection in evolutionary networks. J. Intell. Inf. Syst. 39(1): 59-85 (2012) - [j18]Matthew C. Schmidt, Andrea M. Rocha, Kanchana Padmanabhan, Yekaterina Shpanskaya, Jillian F. Banfield, Kathleen Scott, James R. Mihelcic, Nagiza F. Samatova:
NIBBS-Search for Fast and Accurate Prediction of Phenotype-Biased Metabolic Systems. PLoS Comput. Biol. 8(5) (2012) - 2011
- [j17]Matthew C. Schmidt, Andrea M. Rocha, Kanchana Padmanabhan, Zhengzhang Chen, Kathleen Scott, James R. Mihelcic, Nagiza F. Samatova:
Efficient alpha, beta-motif Finder for Identification of Phenotype-related Functional Modules. BMC Bioinform. 12: 440 (2011) - [j16]William Hendrix, Andrea M. Rocha, Kanchana Padmanabhan, Alok N. Choudhary, Kathleen Scott, James R. Mihelcic, Nagiza F. Samatova:
DENSE: efficient and prior knowledge-driven discovery of phenotype-associated protein functional modules. BMC Syst. Biol. 5: 172 (2011) - [j15]Wenbin Chen, Matthew C. Schmidt, Nagiza F. Samatova:
On the parameterized complexity of the Multi-MCT and Multi-MCST problems. J. Comb. Optim. 21(2): 151-158 (2011) - [j14]Jiangtian Li, Xiaosong Ma, Srikanth B. Yoginath, Guruprasad Kora, Nagiza F. Samatova:
Transparent runtime parallelization of the R scripting language. J. Parallel Distributed Comput. 71(2): 157-168 (2011) - [j13]Heshan Lin, Xiaosong Ma, Wu-chun Feng, Nagiza F. Samatova:
Coordinating Computation and I/O in Massively Parallel Sequence Search. IEEE Trans. Parallel Distributed Syst. 22(4): 529-543 (2011) - 2010
- [j12]Tatiana V. Karpinets, Margaret F. Romine, Denise Schmoyer, Guruprasad Kora, Mustafa H. Syed, Michael R. Leuze, Margrethe H. Serres, Byung-Hoon Park, Nagiza F. Samatova, Edward C. Uberbacher:
Shewanella knowledgebase: integration of the experimental data and computational predictions suggests a biological role for transcription of intergenic regions. Database J. Biol. Databases Curation 2010 (2010) - [j11]Chongle Pan, Byung-Hoon Park, William H. McDonald, Patricia A. Carey, Jillian F. Banfield, Nathan Verberkmoes, Robert L. Hettich, Nagiza F. Samatova:
A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry. BMC Bioinform. 11: 118 (2010) - [j10]William Hendrix, Matthew C. Schmidt, Paul Breimyer, Nagiza F. Samatova:
Theoretical underpinnings for maximal clique enumeration on perturbed graphs. Theor. Comput. Sci. 411(26-28): 2520-2536 (2010) - 2009
- [j9]Matthew C. Schmidt, Nagiza F. Samatova, Kevin Thomas, Byung-Hoon Park:
A scalable, parallel algorithm for maximal clique enumeration. J. Parallel Distributed Comput. 69(4): 417-428 (2009) - [j8]Paul Breimyer, Nathan David Green, Vinay Kumar, Nagiza F. Samatova:
BioDEAL: community generation of biological annotations. BMC Medical Informatics Decis. Mak. 9(S-1): S5 (2009) - [j7]Wenbin Chen, Matthew C. Schmidt, Nagiza F. Samatova:
On parameterized complexity of the Multi-MCS problem. Theor. Comput. Sci. 410(21-23): 2024-2032 (2009) - 2008
- [j6]Bing Zhang, Byung-Hoon Park, Tatiana V. Karpinets, Nagiza F. Samatova:
From pull-down data to protein interaction networks and complexes with biological relevance. Bioinform. 24(7): 979-986 (2008) - 2007
- [j5]Byung-Hoon Park, George Ostrouchov, Nagiza F. Samatova:
Sampling streaming data with replacement. Comput. Stat. Data Anal. 52(2): 750-762 (2007) - [j4]Robert Sisneros, Chad Jones, Jian Huang, Jinzhu Gao, Byung-Hoon Park, Nagiza F. Samatova:
A Multi-Level Cache Model for Run-Time Optimization of Remote Visualization. IEEE Trans. Vis. Comput. Graph. 13(5): 991-1003 (2007) - 2006
- [j3]James M. McCollum, Gregory D. Peterson, Chris D. Cox, Michael L. Simpson, Nagiza F. Samatova:
The sorting direct method for stochastic simulation of biochemical systems with varying reaction execution behavior. Comput. Biol. Chem. 30(1): 39-49 (2006) - 2005
- [j2]George Ostrouchov, Nagiza F. Samatova:
On FastMap and the Convex Hull of Multivariate Data: Toward Fast and Robust Dimension Reduction. IEEE Trans. Pattern Anal. Mach. Intell. 27(8): 1340-1343 (2005) - 2002
- [j1]Nagiza F. Samatova, George Ostrouchov, Al Geist, Anatoli V. Melechko:
RACHET: An Efficient Cover-Based Merging of Clustering Hierarchies from Distributed Datasets. Distributed Parallel Databases 11(2): 157-180 (2002)
Conference and Workshop Papers
- 2018
- [c102]Shiou Tian Hsu, Changsung Moon, Paul Jones, Nagiza F. Samatova:
An Interpretable Generative Adversarial Approach to Classification of Latent Entity Relations in Unstructured Sentences. AAAI 2018: 5181-5188 - [c101]Shiou Tian Hsu, Mandar S. Chaudhary, Nagiza F. Samatova:
Multilevel Heuristics for Rationale-Based Entity Relation Classification in Sentences. COLING 2018: 1145-1155 - [c100]Ruixin Yang, Junyi He, Mingyang Xu, Haoqi Ni, Paul Jones, Nagiza F. Samatova:
An Intelligent and Hybrid Weighted Fuzzy Time Series Model Based on Empirical Mode Decomposition for Financial Markets Forecasting. ICDM 2018: 104-118 - [c99]Mandar S. Chaudhary, Nagiza F. Samatova:
Causal Relationship Prediction with Continuous Additive Noise Models. CD@KDD 2018: 66-81 - 2017
- [c98]Ruixin Yang, Mingyang Xu, Junyi He, Stephen Ranshous, Nagiza F. Samatova:
An Intelligent Weighted Fuzzy Time Series Model Based on a Sine-Cosine Adaptive Human Learning Optimization Algorithm and Its Application to Financial Markets Forecasting. ADMA 2017: 595-607 - [c97]Paul Jones, Dakota Medd, Sreekanth Ramakrishnan, Rajat Shah, Joann Keyton, Nagiza F. Samatova:
Towards Automatic Linkage of Knowledge Worker's Claims with Associated Evidence from Screenshots. BigDataService 2017: 17-22 - [c96]Mingyang Xu, Ruixin Yang, Paul Jones, Nagiza F. Samatova:
Mining Aspect-Specific Opinions from Online Reviews Using a Latent Embedding Structured Topic Model. CICLing (2) 2017: 195-210 - [c95]Changsung Moon, Paul Jones, Nagiza F. Samatova:
Learning Entity Type Embeddings for Knowledge Graph Completion. CIKM 2017: 2215-2218 - [c94]Stephen Ranshous, Mandar S. Chaudhary, Nagiza F. Samatova:
Efficient Outlier Detection in Hyperedge Streams Using MinHash and Locality-Sensitive Hashing. COMPLEX NETWORKS 2017: 105-116 - [c93]Mandar S. Chaudhary, Stephen Ranshous, Nagiza F. Samatova:
A Community-Driven Graph Partitioning Method for Constraint-Based Causal Discovery. COMPLEX NETWORKS 2017: 253-264 - [c92]Shiou Tian Hsu, Changsung Moon, Paul Jones, Nagiza F. Samatova:
A Hybrid CNN-RNN Alignment Model for Phrase-Aware Sentence Classification. EACL (2) 2017: 443-449 - [c91]Stephen Ranshous, Cliff A. Joslyn, Sean Kreyling, Kathleen Nowak, Nagiza F. Samatova, Curtis L. West, Samuel Winters:
Exchange Pattern Mining in the Bitcoin Transaction Directed Hypergraph. Financial Cryptography Workshops 2017: 248-263 - [c90]Ruixin Yang, Mingyang Xu, Paul Jones, Nagiza F. Samatova:
Real time utility-based recommendation for revenue optimization via an adaptive online Top-K high utility itemsets mining model. ICNC-FSKD 2017: 1859-1866 - [c89]Paul Jones, Shivani Sharma, Changsung Moon, Nagiza F. Samatova:
A Network-Fusion Guided Dashboard Interface for Task-Centric Document Curation. IUI 2017: 481-491 - [c88]Changsung Moon, Steve Harenberg, John Slankas, Nagiza F. Samatova:
Learning Contextual Embeddings for Knowledge Graph Completion. PACIS 2017: 248 - [c87]Mingyang Xu, Ruixin Yang, Steve Harenberg, Nagiza F. Samatova:
A Lifelong Learning Topic Model Structured Using Latent Embeddings. ICSC 2017: 260-261 - [c86]Steve Harenberg, Mandar S. Chaudhary, Nagiza F. Samatova:
Mining Persistent and Discriminative Communities in Graph Ensembles. SSDBM 2017: 28:1-28:6 - [c85]Mingyang Xu, Ruixin Yang, Stephen Ranshous, Shijie Li, Nagiza F. Samatova:
Leveraging External Knowledge for Phrase-Based Topic Modeling. TAAI 2017: 29-32 - 2016
- [c84]Gonzalo A. Bello, Steve Harenberg, Abhishek Agrawal, Nagiza F. Samatova:
Community Detection in Dynamic Attributed Graphs. ADMA 2016: 329-344 - [c83]Mandar S. Chaudhary, Doel L. Gonzalez II, Gonzalo A. Bello, Michael P. Angus, Dhara Desai, Steve Harenberg, P. Murali Doraiswamy, Fredrick H. M. Semazzi, Vipin Kumar, Nagiza F. Samatova:
Causality-Guided Feature Selection. ADMA 2016: 391-405 - [c82]Steve Harenberg, Ramona G. Seay, Gonzalo A. Bello, Rada Chirkova, P. Murali Doraiswamy, Nagiza F. Samatova:
Knowledge-Guided Maximal Clique Enumeration. ADMA 2016: 604-618 - [c81]Wenzhao Zhang, Houjun Tang, Stephen Ranshous, Surendra Byna, Daniel F. Martin, Kesheng Wu, Bin Dong, Scott Klasky, Nagiza F. Samatova:
Exploring memory hierarchy and network topology for runtime AMR data sharing across scientific applications. IEEE BigData 2016: 1359-1366 - [c80]Wenzhao Zhang, Houjun Tang, Steve Harenberg, Surendra Byna, Xiaocheng Zou, Dharshi Devendran, Daniel F. Martin, Kesheng Wu, Bin Dong, Scott Klasky, Nagiza F. Samatova:
AMRZone: A Runtime AMR Data Sharing Framework for Scientific Applications. CCGrid 2016: 116-125 - [c79]Houjun Tang, Surendra Byna, Steve Harenberg, Xiaocheng Zou, Wenzhao Zhang, Kesheng Wu, Bin Dong, Oliver Rübel, Kristofer E. Bouchard, Scott Klasky, Nagiza F. Samatova:
Usage Pattern-Driven Dynamic Data Layout Reorganization. CCGrid 2016: 356-365 - [c78]Houjun Tang, Suren Byna, Steve Harenberg, Wenzhao Zhang, Xiaocheng Zou, Daniel F. Martin, Bin Dong, Dharshi Devendran, Kesheng Wu, David Trebotich, Scott Klasky, Nagiza F. Samatova:
In Situ Storage Layout Optimization for AMR Spatio-temporal Read Accesses. ICPP 2016: 406-415 - [c77]Changsung Moon, Dakota Medd, Paul Jones, Steve Harenberg, William Oxbury, Nagiza F. Samatova:
Online Prediction of User Actions through an Ensemble Vote from Vector Representation and Frequency Analysis Models. SDM 2016: 90-98 - [c76]Stephen Ranshous, Steve Harenberg, Kshitij Sharma, Nagiza F. Samatova:
A Scalable Approach for Outlier Detection in Edge Streams Using Sketch-based Approximations. SDM 2016: 189-197 - 2015
- [c75]Xiaocheng Zou, Kesheng Wu, David A. Boyuka II, Daniel F. Martin, Surendra Byna, Houjun Tang, Kushal Bansal, Terry J. Ligocki, Hans Johansen, Nagiza F. Samatova:
Parallel In Situ Detection of Connected Components in Adaptive Mesh Refinement Data. CCGRID 2015: 302-312 - [c74]Wenzhao Zhang, Houjun Tang, Xiaocheng Zou, Steve Harenberg, Qing Liu, Scott Klasky, Nagiza F. Samatova:
Exploring Memory Hierarchy to Improve Scientific Data Read Performance. CLUSTER 2015: 66-69 - [c73]Gonzalo A. Bello, Michael P. Angus, Navya Pedemane, Jitendra K. Harlalka, Fredrick H. M. Semazzi, Vipin Kumar, Nagiza F. Samatova:
Response-Guided Community Detection: Application to Climate Index Discovery. ECML/PKDD (2) 2015: 736-751 - [c72]David A. Boyuka II, Houjun Tang, Kushal Bansal, Xiaocheng Zou, Scott Klasky, Nagiza F. Samatova:
The hyperdyadic index and generalized indexing and query with PIQUE. SSDBM 2015: 20:1-20:12 - 2014
- [c71]David A. Boyuka II, Sriram Lakshminarasimhan, Xiaocheng Zou, Zhenhuan Gong, John Jenkins, Eric R. Schendel, Norbert Podhorszki, Qing Liu, Scott Klasky, Nagiza F. Samatova:
Transparent in Situ Data Transformations in ADIOS. CCGRID 2014: 256-266 - [c70]Houjun Tang, Xiaocheng Zou, John Jenkins, David A. Boyuka II, Stephen Ranshous, Dries Kimpe, Scott Klasky, Nagiza F. Samatova:
Improving Read Performance with Online Access Pattern Analysis and Prefetching. Euro-Par 2014: 246-257 - [c69]Xiaocheng Zou, Sriram Lakshminarasimhan, David A. Boyuka II, Stephen Ranshous, Houjun Tang, Scott Klasky, Nagiza F. Samatova:
Fast Set Intersection through Run-Time Bitmap Construction over PForDelta-Compressed Indexes. Euro-Par 2014: 668-679 - [c68]Steve Harenberg, Ramona G. Seay, Stephen Ranshous, Kanchana Padmanabhan, Jitendra K. Harlalka, Eric R. Schendel, Michael P. O'Brien, Rada Chirkova, William Hendrix, Alok N. Choudhary, Vipin Kumar, Murali Doraiswamy, Nagiza F. Samatova:
Memory-efficient Query-driven Community Detection with Application to Complex Disease Associations. SDM 2014: 1010-1018 - [c67]John Jenkins, Xiaocheng Zou, Houjun Tang, Dries Kimpe, Robert B. Ross, Nagiza F. Samatova:
RADAR: Runtime Asymmetric Data-Access Driven Scientific Data Replication. ISC 2014: 296-313 - 2013
- [c66]Zhenhuan Gong, David A. Boyuka II, Xiaocheng Zou, Qing Liu, Norbert Podhorszki, Scott Klasky, Xiaosong Ma, Nagiza F. Samatova:
PARLO: PArallel Run-Time Layout Optimization for Scientific Data Explorations with Heterogeneous Access Patterns. CCGRID 2013: 343-351 - [c65]Eric R. Schendel, Steve Harenberg, Houjun Tang, Venkatram Vishwanath, Michael E. Papka, Nagiza F. Samatova:
A Generic High-Performance Method for Deinterleaving Scientific Data. Euro-Par 2013: 571-582 - [c64]Sriram Lakshminarasimhan, David A. Boyuka II, Saurabh V. Pendse, Xiaocheng Zou, John Jenkins, Venkatram Vishwanath, Michael E. Papka, Nagiza F. Samatova:
Scalable in situ scientific data encoding for analytical query processing. HPDC 2013: 1-12 - [c63]Doel L. Gonzalez, Saurabh V. Pendse, Kanchana Padmanabhan, Michael P. Angus, Isaac K. Tetteh, Shashank Srinivas, Andrea Villanes, Fredrick H. M. Semazzi, Vipin Kumar, Nagiza F. Samatova:
Coupled Heterogeneous Association Rule Mining (CHARM): Application Toward Inference of Modulatory Climate Relationships. ICDM 2013: 1055-1060 - [c62]Zhengzhang Chen, Yusheng Xie, Yu Cheng, Kunpeng Zhang, Ankit Agrawal, Wei-keng Liao, Nagiza F. Samatova, Alok N. Choudhary:
Forecast Oriented Classification of Spatio-Temporal Extreme Events. IJCAI 2013: 2952-2954 - [c61]Zhengzhang Chen, Alok N. Choudhary, John Jenkins, Vipin Kumar, Anatoli V. Melechko, Jinfeng Rao, Nagiza F. Samatova, Fredrick H. M. Semazzi:
Automatic Detection and Correction of Multi-class Classification Errors Using System Whole-part Relationships. SDM 2013: 494-502 - 2012
- [c60]Neil Shah, Eric R. Schendel, Sriram Lakshminarasimhan, Saurabh V. Pendse, Terry Rogers, Nagiza F. Samatova:
Improving I/O Throughput with PRIMACY: Preconditioning ID-Mapper for Compressing Incompressibility. CLUSTER 2012: 209-219 - [c59]John Jenkins, James Dinan, Pavan Balaji, Nagiza F. Samatova, Rajeev Thakur:
Enabling Fast, Noncontiguous GPU Data Movement in Hybrid MPI+GPU Environments. CLUSTER 2012: 468-476 - [c58]John Jenkins, Isha Arkatkar, Sriram Lakshminarasimhan, Neil Shah, Eric R. Schendel, Stéphane Ethier, Choong-Seock Chang, Jacqueline H. Chen, Hemanth Kolla, Scott Klasky, Robert B. Ross, Nagiza F. Samatova:
Analytics-Driven Lossless Data Compression for Rapid In-situ Indexing, Storing, and Querying. DEXA (2) 2012: 16-30 - [c57]Sriram Lakshminarasimhan, Prabhat Kumar, Wei-keng Liao, Alok N. Choudhary, Vipin Kumar, Nagiza F. Samatova:
On the path to sustainable, scalable, and energy-efficient data analytics: Challenges, promises, and future directions. IGCC 2012: 1-6 - [c56]Eric R. Schendel, Saurabh V. Pendse, John Jenkins, David A. Boyuka II, Zhenhuan Gong, Sriram Lakshminarasimhan, Qing Liu, Hemanth Kolla, Jackie Chen, Scott Klasky, Robert B. Ross, Nagiza F. Samatova:
ISOBAR hybrid compression-I/O interleaving for large-scale parallel I/O optimization. HPDC 2012: 61-72 - [c55]Eric R. Schendel, Ye Jin, Neil Shah, Jackie Chen, Choong-Seock Chang, Seung-Hoe Ku, Stéphane Ethier, Scott Klasky, Robert Latham, Robert B. Ross, Nagiza F. Samatova:
ISOBAR Preconditioner for Effective and High-throughput Lossless Data Compression. ICDE 2012: 138-149 - [c54]Doel L. Gonzalez, Zhengzhang Chen, Isaac K. Tetteh, Tatdow Pansombut, Fredrick H. M. Semazzi, Vipin Kumar, Anatoli V. Melechko, Nagiza F. Samatova:
Hierarchical Classifier-Regression Ensemble for Multi-phase Non-linear Dynamic System Response Prediction: Application to Climate Analysis. ICDM Workshops 2012: 781-788 - [c53]Zhenhuan Gong, Terry Rogers, John Jenkins, Hemanth Kolla, Stéphane Ethier, Jackie Chen, Robert B. Ross, Scott Klasky, Nagiza F. Samatova:
MLOC: Multi-level Layout Optimization Framework for Compressed Scientific Data Exploration with Heterogeneous Access Patterns. ICPP 2012: 239-248 - [c52]Zhenhuan Gong, Sriram Lakshminarasimhan, John Jenkins, Hemanth Kolla, Stéphane Ethier, Jackie Chen, Robert B. Ross, Scott Klasky, Nagiza F. Samatova:
Multi-level Layout Optimization for Efficient Spatio-temporal Queries on ISABELA-compressed Data. IPDPS 2012: 873-884 - [c51]John Jenkins, Eric R. Schendel, Sriram Lakshminarasimhan, David A. Boyuka II, Terry Rogers, Stéphane Ethier, Robert B. Ross, Scott Klasky, Nagiza F. Samatova:
Byte-precision level of detail processing for variable precision analytics. SC 2012: 48 - [c50]Saurabh V. Pendse, Isaac K. Tetteh, Fredrick H. M. Semazzi, Vipin Kumar, Nagiza F. Samatova:
Toward Data-driven, Semi-automatic Inference of Phenomenological Physical Models: Application to Eastern Sahel Rainfall. SDM 2012: 35-46 - 2011
- [c49]Kevin A. Wilson, Andrea M. Rocha, Kanchana Padmanabhan, Kuangyu Wang, Zhengzhang Chen, Ye Jin, James R. Mihelcic, Nagiza F. Samatova:
Detecting Pathway Cross-Talks by Analyzing Conserved Functional Modules across Multiple Phenotype-Expressing Organisms. BIBM 2011: 443-449 - [c48]Jaya Kawale, Stefan Liess, Arjun Kumar, Michael S. Steinbach, Auroop R. Ganguly, Nagiza F. Samatova, Fredrick H. M. Semazzi, Peter K. Snyder, Vipin Kumar:
Data Guided Discovery of Dynamic Climate Dipoles. CIDU 2011: 30-44 - [c47]Sriram Lakshminarasimhan, Neil Shah, Stéphane Ethier, Scott Klasky, Robert Latham, Robert B. Ross, Nagiza F. Samatova:
Compressing the Incompressible with ISABELA: In-situ Reduction of Spatio-temporal Data. Euro-Par (1) 2011: 366-379 - [c46]John Jenkins, Isha Arkatkar, John D. Owens, Alok N. Choudhary, Nagiza F. Samatova:
Lessons Learned from Exploring the Backtracking Paradigm on the GPU. Euro-Par (2) 2011: 425-437 - [c45]Ye Jin, Sriram Lakshminarasimhan, Neil Shah, Zhenhuan Gong, Choong-Seock Chang, Jackie Chen, Stéphane Ethier, Hemanth Kolla, Seung-Hoe Ku, Scott Klasky, Robert Latham, Robert B. Ross, Karen Schuchardt, Nagiza F. Samatova:
S-preconditioner for Multi-fold Data Reduction with Guaranteed User-Controlled Accuracy. ICDM 2011: 290-299 - [c44]Tatdow Pansombut, William Hendrix, Zekai Jacob Gao, Brent E. Harrison, Nagiza F. Samatova:
Biclustering-Driven Ensemble of Bayesian Belief Network Classifiers for Underdetermined Problems. IJCAI 2011: 1439-1445 - [c43]Huseyin Sencan, Zhengzhang Chen, William Hendrix, Tatdow Pansombut, Fredrick H. M. Semazzi, Alok N. Choudhary, Vipin Kumar, Anatoli V. Melechko, Nagiza F. Samatova:
Classification of Emerging Extreme Event Tracks in Multivariate Spatio-Temporal Physical Systems Using Dynamic Network Structures: Application to Hurricane Track Prediction. IJCAI 2011: 1478-1484 - [c42]William Hendrix, Tatiana V. Karpinets, Byung-Hoon Park, Eric R. Schendel, Alok N. Choudhary, Nagiza F. Samatova:
Sensitive and Specific Identification of Protein Complexes in "Perturbed" Protein Interaction Networks from Noisy Pull-Down Data. IPDPS Workshops 2011: 512-522 - [c41]Sriram Lakshminarasimhan, John Jenkins, Isha Arkatkar, Zhenhuan Gong, Hemanth Kolla, Seung-Hoe Ku, Stéphane Ethier, Jackie Chen, Choong-Seock Chang, Scott Klasky, Robert Latham, Robert B. Ross, Nagiza F. Samatova:
ISABELA-QA: query-driven analytics with ISABELA-compressed extreme-scale scientific data. SC 2011: 31:1-31:11 - 2010
- [c40]Nathan David Green, Paul Breimyer, Vinay Kumar, Nagiza F. Samatova:
PackPlay: Mining Semantic Data in Collaborative Games. Linguistic Annotation Workshop 2010: 227-234 - [c39]William Hendrix, Andrea M. Rocha, Mark T. Elmore, Joe Trien, Nagiza F. Samatova:
Discovery of Enriched Biological Motifs Using Knowledge Priors with Application to Biohydrogen Production. BIOCOMP 2010: 17-23 - [c38]Wenhong Tian, Matthew C. Schmidt, Wenbin Chen, Nagiza F. Samatova:
Multiple Alignment of Large Interaction Networks by Fast Identifying Maximal Conserved Patterns. BIOCOMP 2010: 178-184 - [c37]Zhengzhang Chen, Kevin A. Wilson, Ye Jin, William Hendrix, Nagiza F. Samatova:
Detecting and Tracking Community Dynamics in Evolutionary Networks. ICDM Workshops 2010: 318-327 - [c36]Wenbin Chen, Andrea M. Rocha, William Hendrix, Matthew C. Schmidt, Nagiza F. Samatova:
The Multiple Alignment Algorithm for Metabolic Pathways without Abstraction. ICDM Workshops 2010: 669-678 - [c35]Tatdow Pansombut, Brent E. Harrison, Dennis R. Bahler, Nagiza F. Samatova:
Improving the Performance of Bayesian Belief Network Classifiers via Decision Tree Based Feature Selection. IKE 2010: 49-56 - 2009
- [c34]Matthew C. Schmidt, Nagiza F. Samatova:
An Algorithm for the Discovery of Phenotype Related Metabolic Pathways. BIBM 2009: 60-65 - [c33]Wenbin Chen, Matthew C. Schmidt, Wenhong Tian, Nagiza F. Samatova:
A Fast, Accurate Algorithm for Identifying Functional Modules Through Pairwise Local Alignment of Protein Interaction Networks. BIOCOMP 2009: 816-821 - [c32]Patricia Brent, Nathan David Green, Paul Breimyer, Ramya Krishnamurthy, Nagiza F. Samatova:
Systematic Evaluation of Convergence Criteria in Iterative Training for NLP. FLAIRS 2009 - [c31]Paul Breimyer, Guruprasad Kora, William Hendrix, Neil Shah, Nagiza F. Samatova:
PR: Automatic parallelization of data-parallel statistical computing codes for R in hybrid multi-node and multi-core environments. IADIS AC (2) 2009: 28-32 - [c30]Paul Breimyer, Guruprasad Kora, Nagiza F. Samatova:
Web-Enabled R for Large-Scale Collaborative Data Mining: A Survey. IKE 2009: 615-621 - [c29]Paul Breimyer, William Hendrix, Guruprasad Kora, Nagiza F. Samatova:
pR: Lightweight, Easy-to-Use Middleware to Plugin Parallel Analytical Computing with R. IKE 2009: 667-673 - [c28]Amit C. Awekar, Nagiza F. Samatova, Paul Breimyer:
Incremental All Pairs Similarity Search for Varying Similarity Thresholds with Reduced I/O Overhead. IKE 2009: 687-693 - [c27]Amit C. Awekar, Nagiza F. Samatova, Paul Breimyer:
Incremental all pairs similarity search for varying similarity thresholds. SNAKDD 2009: 1 - [c26]William Hendrix, Matthew C. Schmidt, Paul Breimyer, Nagiza F. Samatova:
On perturbation theory and an algorithm for maximal clique enumeration in uncertain and noisy graphs. KDD Workshop on Knowledge Discovery from Uncertain Data 2009: 48-56 - [c25]Nathan David Green, Paul Breimyer, Vinay Kumar, Nagiza F. Samatova:
WebBANC: Building Semantically-Rich Annotated Corpora from Web User Annotations of Minority Languages. NODALIDA 2009: 48-56 - [c24]Wenhong Tian, Nagiza F. Samatova:
Pairwise Alignment of Interaction Networks by Fast Identification of Maximal Conserved Patterns. Pacific Symposium on Biocomputing 2009: 99-110 - [c23]Amit C. Awekar, Nagiza F. Samatova:
Fast Matching for All Pairs Similarity Search. Web Intelligence 2009: 295-300 - 2008
- [c22]Byung-Hoon Park, Nagiza F. Samatova, Rajesh Munavalli, Ramya Krishnamurthy, Houssain Kettani, Al Geist:
Rapid and robust ranking of text documents in a dynamically changing corpus. AICCSA 2008: 149-155 - [c21]Byung-Hoon Park, Matthew C. Schmidt, Kevin Thomas, Tatiana V. Karpinets, Nagiza F. Samatova:
Parallel, scalable, memory-efficient backtracking for combinatoria modeling of large-scale biological systems. IPDPS 2008: 1-8 - [c20]Heshan Lin, Xiaosong Ma, Jiangtian Li, Ting Yu, Nagiza F. Samatova:
Adaptive Request Scheduling for Parallel Scientific Web Services. SSDBM 2008: 276-294 - 2007
- [c19]Faisal N. Abu-Khzam, Nagiza F. Samatova, Mohamad A. Rizk, Michael A. Langston:
The Maximum Common Subgraph Problem: Faster Solutions via Vertex Cover. AICCSA 2007: 367-373 - [c18]Byung-Hoon Park, Bing Zhang, Tatiana V. Karpinets, Nagiza F. Samatova:
Multi-stage Framework to Infer Protein Functional Modules from Mass Spectrometry Pull-Down Data with Assessment of Biological Relevance. BIBM 2007: 223-229 - [c17]Xiaosong Ma, Jiangtian Li, Nagiza F. Samatova:
Automatic Parallelization of Scripting Languages: Toward Transparent Desktop Parallel Computing. IPDPS 2007: 1-6 - [c16]Faisal N. Abu-Khzam, Mohamad A. Rizk, Deema A. Abdallah, Nagiza F. Samatova:
The Buffered Work-Pool Approach for Search-Tree Based Optimization Algorithms. PPAM 2007: 170-179 - 2006
- [c15]Christopher T. Symons, Nagiza F. Samatova, Ramya Krishnamurthy, Byung-Hoon Park, Tarik Umar, David Buttler, Terence Critchlow, David Hysom:
Multi-Criterion Active Learning in Conditional Random Fields. ICTAI 2006: 323-331 - 2005
- [c14]Srikanth B. Yoginath, Nagiza F. Samatova, David Bauer, Guruprasad Kora, George Fann, Al Geist:
RScaLAPACK: High-Performance Parallel Statistical Computing with R and ScaLAPACK. PDCS 2005: 61-67 - [c13]W. Henry Suters, Faisal N. Abu-Khzam, Yun Zhang, Christopher T. Symons, Nagiza F. Samatova, Michael A. Langston:
A New Approach and Faster Exact Methods for the Maximum Common Subgraph Problem. COCOON 2005: 717-727 - [c12]Brandon Thurmon, James M. McCollum, Gregory D. Peterson, Chris D. Cox, Nagiza F. Samatova, Gary S. Sayler, Michael L. Simpson:
Accelerating Exact Stochastic Simulation Using Reconfigurable Computing. ERSA 2005: 105-111 - [c11]Heshan Lin, Xiaosong Ma, Praveen Chandramohan, Al Geist, Nagiza F. Samatova:
Efficient Data Access for Parallel BLAST. IPDPS 2005 - [c10]Yun Zhang, Faisal N. Abu-Khzam, Nicole E. Baldwin, Elissa J. Chesler, Michael A. Langston, Nagiza F. Samatova:
Genome-Scale Computational Approaches to Memory-Intensive Applications in Systems Biology. SC 2005: 12 - 2004
- [c9]Gong-Xin Yu, Byung-Hoon Park, Praveen Chandramohan, Al Geist, Nagiza F. Samatova:
In-Silico Prediction of Surface Residue Clusters for Enzyme-Substrate Specificity. CSB 2004: 696-697 - [c8]Byung-Hoon Park, George Ostrouchov, Nagiza F. Samatova, Al Geist:
Reservoir-Based Random Sampling with Replacement from Data Stream. SDM 2004: 492-496 - 2003
- [c7]Gong-Xin Yu, George Ostrouchov, Al Geist, Nagiza F. Samatova:
An SVM-based Algorithm for Identification of Photosynthesis-specific Genome Features. CSB 2003: 235-243 - [c6]Byung-Hoon Park, George Ostrouchov, Gong-Xin Yu, Al Geist, Andrey Gorin, Nagiza F. Samatova:
Inference of Protein-Protein Interactions by Unlikely Profile Pair. ICDM 2003: 735-738 - [c5]E. Wes Bethel, Greg Abram, John Shalf, Randy Frank, James P. Ahrens, Steven G. Parker, Nagiza F. Samatova, Mark C. Miller:
Interoperability of Visualization Software and Data Models is NOT an Achievable Goal. IEEE Visualization 2003: 607-610 - 2002
- [c4]Thomas E. Potok, Mark T. Elmore, Joel W. Reed, Nagiza F. Samatova:
An Ontology-Based HTML to XML Conversion Using Intelligent Agents. HICSS 2002: 120 - [c3]Nagiza F. Samatova, Al Geist, George Ostrouchov, Anatoli V. Melechko:
Parallel Out-of-Core Algorithm for Genome-Scale Enumeration of Metabolic Systemic Pathways. IPDPS 2002 - [c2]Faisal N. Abu-Khzam, Nagiza F. Samatova, George Ostrouchov, Michael A. Langston, Al Geist:
Distributed Dimension Reduction Algorithms for Widely Dispersed Data. IASTED PDCS 2002: 167-174 - 2000
- [c1]Thomas E. Potok, Nenad Ivezic, Nagiza F. Samatova:
Agent-based Architecture for Flexible Lean Cell Design, Analysis and Evaluation. DIISM 2000: 181-188
Parts in Books or Collections
- 2009
- [p1]Chandrika Kamath, Nikil Wale, George Karypis, Gaurav Pandey, Vipin Kumar, Krishna Rajan, Nagiza F. Samatova, Paul Breimyer, Guruprasad Kora, Chongle Pan, Srikanth B. Yoginath:
Scientific Data Analysis. Scientific Data Management 2009
Informal and Other Publications
- 2016
- [i1]Anuj Karpatne, Gowtham Atluri, James H. Faghmous, Michael S. Steinbach, Arindam Banerjee, Auroop R. Ganguly, Shashi Shekhar, Nagiza F. Samatova, Vipin Kumar:
Theory-guided Data Science: A New Paradigm for Scientific Discovery. CoRR abs/1612.08544 (2016)
Coauthor Index
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