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2020 – today
- 2022
[j23]Shehab S. Ahmed
, Zaara T. Rifat, Ruchi Lohia, Arthur J. Campbell, A. Keith Dunker, M. Sohel Rahman, Sumaiya Iqbal:
Characterization of intrinsically disordered regions in proteins informed by human genetic diversity. PLoS Comput. Biol. 18(3) (2022)- 2021
- [j22]Bi Zhao, Akila Katuwawala, Christopher J. Oldfield, A. Keith Dunker, Eshel Faraggi, Jörg Gsponer, Andrzej Kloczkowski, Nawar Malhis, Milot Mirdita, Zoran Obradovic, Johannes Söding, Martin Steinegger, Yaoqi Zhou, Lukasz A. Kurgan:
DescribePROT: database of amino acid-level protein structure and function predictions. Nucleic Acids Res. 49(Database-Issue): D298-D308 (2021) - [c31]Gil Alterovitz, Wei-Lun Alterovitz, Gail H. Cassell, Lixin Zhang, A. Keith Dunker:
AI for infectious disease modelling and therapeutics. PSB 2021 - [c30]Gerard Kian-Meng Goh, A. Keith Dunker, James A. Foster, Vladimir N. Uversky:
Feasibility of the vaccine development for SARS-CoV-2 and other viruses using the shell disorder analysis. PSB 2021 - 2020
- [j21]András Hatos, Borbála Hajdu-Soltész, Alexander Miguel Monzon, Nicolas Palopoli, Lucía Álvarez, Burcu Aykaç Fas, Claudio Bassot, Guillermo I. Benítez, Martina Bevilacqua, Anastasia Chasapi, Lucía B. Chemes, Norman E. Davey, Radoslav Davidovic, A. Keith Dunker, Arne Elofsson, Julien Gobeill, Nicolás S. González Foutel, Govindarajan Sudha, Mainak Guharoy, Tamás Horváth, Valentin Iglesias, Andrey V. Kajava, Orsolya P. Kovács, John Lamb, Matteo Lambrughi, Tamas Lazar, Jeremy Y. Leclercq, Emanuela Leonardi, Sandra Macedo-Ribeiro, Mauricio Macossay-Castillo, Emiliano Maiani, José A. Manso, Cristina Marino Buslje, Elizabeth Martínez-Pérez, Bálint Mészáros, Ivan Micetic, Giovanni Minervini, Nikoletta Murvai, Marco Necci, Christos A. Ouzounis, Mátyás Pajkos, Lisanna Paladin, Rita Pancsa, Elena Papaleo, Gustavo D. Parisi, Emilie Pasche, Pedro J. Barbosa Pereira, Vasilis J. Promponas, Jordi Pujols, Federica Quaglia, Patrick Ruch, Marco Salvatore, Éva Schád, Beáta Szabó, Tamás Szaniszló, Stella Tamana, Ágnes Tantos, Nevena Veljkovic, Salvador Ventura, Wim F. Vranken, Zsuzsanna Dosztányi, Peter Tompa, Silvio C. E. Tosatto, Damiano Piovesan:
DisProt: intrinsic protein disorder annotation in 2020. Nucleic Acids Res. 48(Database-Issue): D269-D276 (2020) - [c29]Lukasz A. Kurgan, Predrag Radivojac, Joel L. Sussman, A. Keith Dunker:
Session Introduction. PSB 2020: 149-158 - [c28]Wei-Lun Alterovitz, Eshel Faraggi, Christopher J. Oldfield, Jingwei Meng, Bin Xue, Fei Huang, Pedro Romero, Andrzej Kloczkowski, Vladimir N. Uversky, A. Keith Dunker:
Many-to-One Binding by Intrinsically Disordered Protein Regions. PSB 2020: 159-170 - [e21]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Marylyn D. Ritchie, Tiffany Murray, Teri E. Klein:
Biocomputing 2021: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2021. WorldScientific 2020, ISBN 9789811232695 [contents]
2010 – 2019
- 2019
- [j20]Eshel Faraggi, A. Keith Dunker, Robert L. Jernigan, Andrzej Kloczkowski:
Entropy, Fluctuations, and Disordered Proteins. Entropy 21(8): 764 (2019) - [e20]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Marylyn D. Ritchie, Teri E. Klein:
Biocomputing 2019: Proceedings of the Pacific Symposium, The Big Island of Hawaii, Hawaii, USA, January 3-7, 2019. 2019 [contents] - 2018
- [c27]Jianhong Zhou, Christopher J. Oldfield, Fei Huang, Wenying Yan, Bairong Shen, A. Keith Dunker:
Identification of intrinsic disorder in complexes from Protein Data Bank. ICCABS 2018: 1 - [e19]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Marylyn D. Ritchie, Teri E. Klein:
Biocomputing 2018: Proceedings of the Pacific Symposium, The Big Island of Hawaii, Hawaii, USA, January 3-7, 2018. 2018 [contents] - 2017
- [j19]Damiano Piovesan, Francesco Tabaro, Ivan Micetic, Marco Necci, Federica Quaglia, Christopher J. Oldfield, Maria Cristina Aspromonte, Norman E. Davey, Radoslav Davidovic, Zsuzsanna Dosztányi, Arne Elofsson, Alessandra Gasparini, András Hatos, Andrey V. Kajava, Lajos Kalmár, Emanuela Leonardi, Tamas Lazar, Sandra Macedo-Ribeiro, Mauricio Macossay-Castillo, Attila Meszaros, Giovanni Minervini, Nikoletta Murvai, Jordi Pujols, Daniel B. Roche, Edoardo Salladini, Éva Schád, Antoine Schramm, Beáta Szabó, Ágnes Tantos, Fiorella Tonello, Konstantinos D. Tsirigos, Nevena Veljkovic, Salvador Ventura, Wim F. Vranken, Per Warholm, Vladimir N. Uversky, A. Keith Dunker, Sonia Longhi, Peter Tompa, Silvio C. E. Tosatto:
DisProt 7.0: a major update of the database of disordered proteins. Nucleic Acids Res. 45(Database-Issue): D219-D227 (2017) - [e18]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Marylyn D. Ritchie, Teri E. Klein:
Biocomputing 2017: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2017. 2017 [contents] - 2016
- [e17]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein, Marylyn D. Ritchie:
Biocomputing 2016: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 4-8, 2016. 2016 [contents] - 2015
- [j18]Fei Huang, Christopher J. Oldfield, Bin Xue, Wei-Lun Hsu, Jingwei Meng, Xiaowen Liu, Li Shen, Pedro Romero, Vladimir N. Uversky, A. Keith Dunker:
Erratum to: Improving protein order-disorder classification using charge-hydropathy plots. BMC Bioinform. 16: 241:1-241:2 (2015) - [e16]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein, Marylyn D. Ritchie:
Biocomputing 2015: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 4-8, 2015. 2015 [contents] - 2014
- [j17]Jack Y. Yang, A. Keith Dunker, Jun S. Liu, Xiang Qin, Hamid R. Arabnia, William Yang, Andrzej Niemierko, Zhongxue Chen, Zuojie Luo, Liangjiang Wang, Yunlong Liu, Dong Xu, Youping Deng, Weida Tong, Mary Qu Yang:
Advances in translational bioinformatics facilitate revealing the landscape of complex disease mechanisms. BMC Bioinform. 15(S-17): I1 (2014) - [j16]William Yang, Kenji Yoshigoe, Xiang Qin, Jun S. Liu, Jack Y. Yang, Andrzej Niemierko, Youping Deng, Yunlong Liu, A. Keith Dunker, Zhongxue Chen, Liangjiang Wang, Dong Xu, Hamid R. Arabnia, Weida Tong, Mary Qu Yang:
Identification of genes and pathways involved in kidney renal clear cell carcinoma. BMC Bioinform. 15(S-17): S2 (2014) - [j15]Fei Huang, Christopher J. Oldfield, Bin Xue, Wei-Lun Hsu, Jingwei Meng, Xiaowen Liu, Li Shen, Pedro Romero, Vladimir N. Uversky, A. Keith Dunker:
Improving protein order-disorder classification using charge-hydropathy plots. BMC Bioinform. 15(S-17): S4 (2014) - [j14]Mihaly Varadi, Simone Kosol, Pierre Lebrun, Erica Valentini, Martin Blackledge, A. Keith Dunker, Isabella C. Felli, Julie D. Forman-Kay, Richard W. Kriwacki, Roberta Pierattelli, Joel L. Sussman, Dmitri I. Svergun, Vladimir N. Uversky, Michele Vendruscolo, David S. Wishart, Peter E. Wright, Peter Tompa:
pE-DB: a database of structural ensembles of intrinsically disordered and of unfolded proteins. Nucleic Acids Res. 42(Database-Issue): 326-335 (2014) - [e15]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein, Marylyn D. Ritchie:
Biocomputing 2014: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2014. 2014 [contents] - 2013
- [j13]Matt E. Oates, Pedro Romero, Takashi Ishida, Mohamed F. Ghalwash, Marcin J. Mizianty, Bin Xue, Zsuzsanna Dosztányi, Vladimir N. Uversky, Zoran Obradovic, Lukasz A. Kurgan, A. Keith Dunker, Julian Gough:
D2P2: database of disordered protein predictions. Nucleic Acids Res. 41(Database-Issue): 508-516 (2013) - [e14]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein:
Biocomputing 2013: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2013. World Scientific Publishing 2013, ISBN 978-1-62748-016-1 [contents] - 2012
- [j12]Fatemeh Miri Disfani, Wei-Lun Hsu, Marcin J. Mizianty, Christopher J. Oldfield, Bin Xue, A. Keith Dunker, Vladimir N. Uversky, Lukasz A. Kurgan:
MoRFpred, a computational tool for sequence-based prediction and characterization of short disorder-to-order transitioning binding regions in proteins. Bioinform. 28(12): 75-83 (2012) - [c26]Jianhan Chen, Jianlin Cheng, A. Keith Dunker:
Session introduction. Pacific Symposium on Biocomputing 2012: 67-69 - [c25]Wei-Lun Hsu, Christopher J. Oldfield, Jingwei Meng, Fei Huang, Bin Xue, Vladimir N. Uversky, Pedro Romero, A. Keith Dunker:
Intrinsic Protein Disorder and Protein-Protein Interactions. Pacific Symposium on Biocomputing 2012: 116-127 - [c24]Fei Huang, Christopher J. Oldfield, Jingwei Meng, Wei-Lun Hsu, Bin Xue, Vladimir N. Uversky, Pedro Romero, A. Keith Dunker:
Subclassifying Disordered Proteins by the CH-CDF Plot Method. Pacific Symposium on Biocomputing 2012: 128-139 - [e13]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein:
Biocomputing 2012: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2012. World Scientific Publishing 2012, ISBN 978-1-61839-811-6 [contents] - 2011
- [j11]Marcin J. Mizianty, Tuo Zhang, Bin Xue, Yaoqi Zhou, A. Keith Dunker, Vladimir N. Uversky, Lukasz A. Kurgan:
In-silico prediction of disorder content using hybrid sequence representation. BMC Bioinform. 12: 245 (2011) - [e12]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein:
Biocomputing 2011: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, 3-7 January 2011. World Scientific Publishing 2011, ISBN 978-981-4335-04-1 [contents] - 2010
- [j10]Bin Xue, Robert W. Williams, Christopher J. Oldfield, A. Keith Dunker, Vladimir N. Uversky:
Archaic chaos: intrinsically disordered proteins in Archaea. BMC Syst. Biol. 4(S-1): S1 (2010) - [e11]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein:
Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010. World Scientific Publishing 2010, ISBN 978-981-4295-29-1 [contents]
2000 – 2009
- 2009
- [c23]Jianjiong Gao, Ganesh Kumar Agrawal, Jay J. Thelen, Zoran Obradovic, A. Keith Dunker, Dong Xu:
A New Machine Learning Approach for Protein Phosphorylation Site Prediction in Plants. BICoB 2009: 18-29 - [c22]Uros Midic, A. Keith Dunker, Zoran Obradovic:
Protein sequence alignment and structural disorder: a substitution matrix for an extended alphabet. KDD Workshop on Statistical and Relational Learning in Bioinformatics 2009: 27-31 - [e10]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein:
Biocomputing 2009: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, 5-9 January 2009. 2009, ISBN 978-981-283-692-2 [contents] - 2008
- [j9]Ágnes Tóth-Petróczy, Christopher J. Oldfield, István Simon, Yuichiro Takagi, A. Keith Dunker, Vladimir N. Uversky, Mónika Fuxreiter:
Malleable Machines in Transcription Regulation: The Mediator Complex. PLoS Comput. Biol. 4(12) (2008) - [e9]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein:
Biocomputing 2008, Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, 4-8 January 2008. World Scientific 2008, ISBN 978-981-277-608-2 [contents] - 2007
- [j8]Vladimir Vacic, Vladimir N. Uversky, A. Keith Dunker, Stefano Lonardi:
Composition Profiler: a tool for discovery and visualization of amino acid composition differences. BMC Bioinform. 8 (2007) - [j7]Uros Midic, A. Keith Dunker, Zoran Obradovic:
Exploring alternative knowledge representations for protein secondary-structure prediction. Int. J. Data Min. Bioinform. 1(3): 286-313 (2007) - [j6]Megan Sickmeier, Justin A. Hamilton, Tanguy LeGall, Vladimir Vacic, Marc S. Cortese, Ágnes Tantos, Beáta Szabó, Peter Tompa, Jake Yue Chen, Vladimir N. Uversky, Zoran Obradovic, A. Keith Dunker:
DisProt: the Database of Disordered Proteins. Nucleic Acids Res. 35(Database-Issue): 786-793 (2007) - [c21]A. Keith Dunker, Christopher J. Oldfield, Jingwei Meng, Pedro Romero, Jack Y. Yang, Zoran Obradovic, Vladimir N. Uversky:
Intrinsically Disordered Proteins: Predictions and Applications. BIBE 2007: 1 - [c20]Vladimir N. Uversky, Christopher J. Oldfield, A. Keith Dunker:
Intrinsically Disordered Proteins in Human Diseases. BIBE 2007: 12 - [c19]A. Keith Dunker, Christopher J. Oldfield, Jingwei Meng, Pedro Romero, Jack Y. Yang, Zoran Obradovic, Vladimir N. Uversky:
Intrinsically Disordered Proteins: An Update. BIBE 2007: 49-58 - [c18]A. Keith Dunker:
Protein Intrinsic Disorder, Cell Signaling, Drug Discovery, and Alternative Splicing. BIOCOMP 2007: 471-472 - [c17]Christopher J. Oldfield, Jingwei Meng, Jack Y. Yang, Vladimir N. Uversky, A. Keith Dunker:
Intrinsic Disorder in Protein-Protein Interaction Networks: Case Studies of Complexes Involving p53 and 14-3-3. BIOCOMP 2007: 553-566 - [e8]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein:
Biocomputing 2007, Proceedings of the Pacific Symposium, Maui, Hawaii, USA, 3-7 January 2007. World Scientific 2007, ISBN 981-270-417-5 [contents] - 2006
- [j5]Kang Peng, Predrag Radivojac, Slobodan Vucetic, A. Keith Dunker, Zoran Obradovic:
Length-dependent prediction of protein intrinsic disorder. BMC Bioinform. 7: 208 (2006) - [e7]Russ B. Altman, Tiffany Murray, Teri E. Klein, A. Keith Dunker, Lawrence Hunter:
Biocomputing 2006, Proceedings of the Pacific Symposium, Maui, Hawaii, USA, 3-7 January 2006. World Scientific 2006, ISBN 981-256-463-2 [contents] - 2005
- [j4]Slobodan Vucetic, Zoran Obradovic, Vladimir Vacic, Predrag Radivojac, Kang Peng, Lilia M. Iakoucheva, Marc S. Cortese, J. David Lawson, Celeste J. Brown, Jason G. Sikes, Crystal D. Newton, A. Keith Dunker:
DisProt: a database of protein disorder. Bioinform. 21(1): 137-140 (2005) - [j3]Kang Peng, Slobodan Vucetic, Predrag Radivojac, Celeste J. Brown, A. Keith Dunker, Zoran Obradovic:
Optimizing Long Intrinsic Disorder Predictors with Protein Evolutionary Information. J. Bioinform. Comput. Biol. 3(1): 35-60 (2005) - [c16]Kenneth Daily, Predrag Radivojac, A. Keith Dunker:
Intrinsic Disorder and Protein modifications: Building an SVM Predictor for Methylation. CIBCB 2005: 475-481 - [c15]Uros Midic, A. Keith Dunker, Zoran Obradovic:
Improving Protein Secondary-Structure Prediction by Predicting Ends of Secondary-Structure Segments. CIBCB 2005: 490-497 - [c14]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein:
Preface. Pacific Symposium on Biocomputing 2005 - [e6]Russ B. Altman, Tiffany A. Jung, Teri E. Klein, A. Keith Dunker, Lawrence Hunter:
Biocomputing 2005, Proceedings of the Pacific Symposium, Hawaii, USA, 4-8 January 2005. World Scientific 2005, ISBN 981-256-046-7 [contents] - 2004
- [j2]Predrag Radivojac, Nitesh V. Chawla, A. Keith Dunker, Zoran Obradovic:
Classification and knowledge discovery in protein databases. J. Biomed. Informatics 37(4): 224-239 (2004) - [c13]Predrag Radivojac, Zoran Obradovic, A. Keith Dunker, Slobodan Vucetic:
Feature Selection Filters Based on the Permutation Test. ECML 2004: 334-346 - [c12]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein:
Preface. Pacific Symposium on Biocomputing 2004 - [e5]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany A. Jung, Teri E. Klein:
Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA, 6-10 January 2004. World Scientific 2004, ISBN 981-238-598-3 [contents] - 2003
- [c11]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein:
Preface. Pacific Symposium on Biocomputing 2003 - [c10]Predrag Radivojac, Zoran Obradovic, Celeste J. Brown, A. Keith Dunker:
Prediction of Boundaries Between Intrinsically Ordered and Disordered Protein Regions. Pacific Symposium on Biocomputing 2003: 216-227 - [c9]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein:
Special Paper - Introduction. Pacific Symposium on Biocomputing 2003: 636-637 - [e4]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein:
Proceedings of the 8th Pacific Symposium on Biocomputing, PSB 2003, Lihue, Hawaii, USA, January 3-7, 2003. 2003 [contents] - 2002
- [c8]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein:
Preface. Pacific Symposium on Biocomputing 2002 - [c7]Predrag Radivojac, Zoran Obradovic, Celeste J. Brown, A. Keith Dunker:
Improving Sequence Alignments For Intrinsically Disordered Proteins. Pacific Symposium on Biocomputing 2002: 589-600 - [e3]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein:
Proceedings of the 7th Pacific Symposium on Biocomputing, PSB 2002, Lihue, Hawaii, USA, January 3-7, 2002. 2002 [contents] - 2001
- [c6]Clay Bracken, Malin M. Young, A. Keith Dunker:
Disorder and Flexibility in Protein Structure and Function - Session Introduction. Pacific Symposium on Biocomputing 2001: 64-66 - [c5]R. M. Williams, Zoran Obradovic, V. Mathura, W. Braun, E. C. Garner, J. Young, S. Takayama, Celeste J. Brown, A. Keith Dunker:
The Protein Non-Folding Problem: Amino Acid Determinants of Intrinsic Order and Disorder. Pacific Symposium on Biocomputing 2001: 89-100 - [e2]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein:
Proceedings of the 6th Pacific Symposium on Biocomputing, PSB 2001, Hawaii, USA, January 3-7, 2001. 2001 [contents] - 2000
- [j1]Pedro Romero, Zoran Obradovic, A. Keith Dunker:
Intelligent Data Analysis for Protein Disorder Prediction. Artif. Intell. Rev. 14(6): 447-484 (2000)
1990 – 1999
- 1999
- [c4]C. Kissinger, A. Keith Dunker, Eugene I. Shakhnovich:
Disorder in Protein Structure and Function - Session Introduction. Pacific Symposium on Biocomputing 1999: 517-519 - [e1]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein:
Proceedings of the 4th Pacific Symposium on Biocomputing, PSB 1999, The Orchid at Mauna Lani, Big Island of Hawaii, USA, January 4-9, 1999. 1999 [contents] - 1997
- [c3]Pedro Romero, Zoran Obradovic, C. Kissinger, J. E. Villafranca, A. Keith Dunker:
Identifying disordered regions in proteins from amino acid sequence. ICNN 1997: 90-95 - 1994
- [c2]R. T. Miller, Richard J. Douthart, A. Keith Dunker:
Identifying Repeated Structural Elements in Folded Proteins. HICSS (5) 1994: 235-244 - [c1]A. Keith Dunker, Richard H. Lathrop:
Protein Structure Prediction: Introductios. HICSS (5) 1994: 295
Coauthor Index
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