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2020 – today
- 2023
[j8]Hyunbin Kim
, Milot Mirdita, Martin Steinegger:
Foldcomp: a library and format for compressing and indexing large protein structure sets. Bioinform. 39(4) (2023)- 2021
- [j7]Milot Mirdita, Martin Steinegger, Florian P. Breitwieser, Johannes Söding, Eli Levy Karin:
Fast and sensitive taxonomic assignment to metagenomic contigs. Bioinform. 37(18): 3029-3031 (2021) - [j6]Ruoshi Zhang, Milot Mirdita, Eli Levy Karin, Clovis Norroy, Clovis Galiez, Johannes Söding:
SpacePHARER: sensitive identification of phages from CRISPR spacers in prokaryotic hosts. Bioinform. 37(19): 3364-3366 (2021) - [j5]Bi Zhao, Akila Katuwawala, Christopher J. Oldfield, A. Keith Dunker, Eshel Faraggi, Jörg Gsponer, Andrzej Kloczkowski, Nawar Malhis, Milot Mirdita, Zoran Obradovic, Johannes Söding, Martin Steinegger, Yaoqi Zhou, Lukasz A. Kurgan:
DescribePROT: database of amino acid-level protein structure and function predictions. Nucleic Acids Res. 49(Database-Issue): D298-D308 (2021) - [j4]Michael Bernhofer, Christian Dallago, Timothy Karl, Venkata P. Satagopam, Michael Heinzinger, Maria Littmann, Tobias Olenyi, Jiajun Qiu, Konstantin Schütze, Guy Yachdav, Haim Ashkenazy, Nir Ben-Tal, Yana Bromberg, Tatyana Goldberg, László Kaján, Seán I. O'Donoghue, Chris Sander, Andrea Schafferhans, Avner Schlessinger, Gerrit Vriend, Milot Mirdita, Piotr Gawron, Wei Gu, Yohan Jarosz, Christophe Trefois, Martin Steinegger, Reinhard Schneider, Burkhard Rost:
PredictProtein - Predicting Protein Structure and Function for 29 Years. Nucleic Acids Res. 49(Webserver-Issue): 535-540 (2021)
2010 – 2019
- 2019
- [j3]Milot Mirdita, Martin Steinegger, Johannes Söding:
MMseqs2 desktop and local web server app for fast, interactive sequence searches. Bioinform. 35(16): 2856-2858 (2019) - [j2]Martin Steinegger, Markus Meier, Milot Mirdita, Harald Vöhringer, Stephan J. Haunsberger, Johannes Söding:
HH-suite3 for fast remote homology detection and deep protein annotation. BMC Bioinform. 20(1): 473:1-473:15 (2019) - 2017
- [j1]Milot Mirdita, Lars von den Driesch, Clovis Galiez, Maria Jesus Martin, Johannes Söding, Martin Steinegger:
Uniclust databases of clustered and deeply annotated protein sequences and alignments. Nucleic Acids Res. 45(Database-Issue): D170-D176 (2017)
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