default search action
Johannes Söding
Person information
- affiliation: Max Planck Institute for Biophysical Chemistry, Göttingen, Germany
Refine list
refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
2020 – today
- 2021
- [j32]Milot Mirdita, Martin Steinegger, Florian P. Breitwieser, Johannes Söding, Eli Levy Karin:
Fast and sensitive taxonomic assignment to metagenomic contigs. Bioinform. 37(18): 3029-3031 (2021) - [j31]Ruoshi Zhang, Milot Mirdita, Eli Levy Karin, Clovis Norroy, Clovis Galiez, Johannes Söding:
SpacePHARER: sensitive identification of phages from CRISPR spacers in prokaryotic hosts. Bioinform. 37(19): 3364-3366 (2021) - [j30]Salma Sohrabi-Jahromi, Johannes Söding:
Thermodynamic modeling reveals widespread multivalent binding by RNA-binding proteins. Bioinform. 37(Supplement): 308-316 (2021) - [j29]Bi Zhao, Akila Katuwawala, Christopher J. Oldfield, A. Keith Dunker, Eshel Faraggi, Jörg Gsponer, Andrzej Kloczkowski, Nawar Malhis, Milot Mirdita, Zoran Obradovic, Johannes Söding, Martin Steinegger, Yaoqi Zhou, Lukasz A. Kurgan:
DescribePROT: database of amino acid-level protein structure and function predictions. Nucleic Acids Res. 49(Database-Issue): D298-D308 (2021)
2010 – 2019
- 2019
- [j28]Milot Mirdita, Martin Steinegger, Johannes Söding:
MMseqs2 desktop and local web server app for fast, interactive sequence searches. Bioinform. 35(16): 2856-2858 (2019) - [j27]Nikolaos Papadopoulos, R. Gonzalo Parra, Johannes Söding:
PROSSTT: probabilistic simulation of single-cell RNA-seq data for complex differentiation processes. Bioinform. 35(18): 3517-3519 (2019) - [j26]Martin Steinegger, Markus Meier, Milot Mirdita, Harald Vöhringer, Stephan J. Haunsberger, Johannes Söding:
HH-suite3 for fast remote homology detection and deep protein annotation. BMC Bioinform. 20(1): 473:1-473:15 (2019) - 2018
- [j25]Anja Kiesel, Christian Roth, Wanwan Ge, Maximilian Weß, Markus Meier, Johannes Söding:
The BaMM web server for de-novo motif discovery and regulatory sequence analysis. Nucleic Acids Res. 46(Webserver-Issue): W215-W220 (2018) - [j24]Susann Vorberg, Stefan Seemayer, Johannes Söding:
Synthetic protein alignments by CCMgen quantify noise in residue-residue contact prediction. PLoS Comput. Biol. 14(11) (2018) - 2017
- [j23]Clovis Galiez, Matthias Siebert, François Enault, Jonathan Vincent, Johannes Söding:
WIsH: who is the host? Predicting prokaryotic hosts from metagenomic phage contigs. Bioinform. 33(19): 3113-3114 (2017) - [j22]Milot Mirdita, Lars von den Driesch, Clovis Galiez, Maria Jesus Martin, Johannes Söding, Martin Steinegger:
Uniclust databases of clustered and deeply annotated protein sequences and alignments. Nucleic Acids Res. 45(Database-Issue): D170-D176 (2017) - 2016
- [j21]Maria Hauser, Martin Steinegger, Johannes Söding:
MMseqs software suite for fast and deep clustering and searching of large protein sequence sets. Bioinform. 32(9): 1323-1330 (2016) - [j20]Vikram Alva, Seung-Zin Nam, Johannes Söding, Andrei N. Lupas:
The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis. Nucleic Acids Res. 44(Webserver-Issue): W410-W415 (2016) - 2015
- [j19]Armin Meier, Johannes Söding:
Context similarity scoring improves protein sequence alignments in the midnight zone. Bioinform. 31(5): 674-681 (2015) - [j18]Jessica Andreani, Johannes Söding:
bbcontacts: prediction of β-strand pairing from direct coupling patterns. Bioinform. 31(11): 1729-1737 (2015) - [j17]Armin Meier, Johannes Söding:
Automatic Prediction of Protein 3D Structures by Probabilistic Multi-template Homology Modeling. PLoS Comput. Biol. 11(10) (2015) - 2014
- [j16]Stefan Seemayer, Markus Gruber, Johannes Söding:
CCMpred - fast and precise prediction of protein residue-residue contacts from correlated mutations. Bioinform. 30(21): 3128-3130 (2014) - [j15]Matthias Siebert, Johannes Söding:
Universality of core promoter elements? Nat. 511(7510): E11-E12 (2014) - 2013
- [j14]Maria Hauser, Christian E. Mayer, Johannes Söding:
kClust: fast and sensitive clustering of large protein sequence databases. BMC Bioinform. 14: 248 (2013) - 2012
- [j13]Christof Angermüller, Andreas Biegert, Johannes Söding:
Discriminative modelling of context-specific amino acid substitution probabilities. Bioinform. 28(24): 3240-3247 (2012) - [j12]Sebastian Luehr, Holger Hartmann, Johannes Söding:
The XXmotif web server for eXhaustive, weight matriX-based motif discovery in nucleotide sequences. Nucleic Acids Res. 40(Web-Server-Issue): 104-109 (2012)
2000 – 2009
- 2009
- [j11]Alex Bateman, Robert D. Finn, Peter J. Sims, Therese Wiedmer, Andreas Biegert, Johannes Söding:
Phospholipid scramblases and Tubby-like proteins belong to a new superfamily of membrane tethered transcription factors. Bioinform. 25(2): 159-162 (2009) - [j10]Michael Remmert, Dirk Linke, Andrei N. Lupas, Johannes Söding:
HHomp - prediction and classification of outer membrane proteins. Nucleic Acids Res. 37(Web-Server-Issue): 446-451 (2009) - 2008
- [j9]J. D. Fischer, Christian E. Mayer, Johannes Söding:
Prediction of protein functional residues from sequence by probability density estimation. Bioinform. 24(5): 613-620 (2008) - [j8]Andreas Biegert, Johannes Söding:
De novo identification of highly diverged protein repeats by probabilistic consistency. Bioinform. 24(6): 807-814 (2008) - 2007
- [j7]Manjunatha R. Karpenahalli, Andrei N. Lupas, Johannes Söding:
TPRpred: a tool for prediction of TPR-, PPR- and SEL1-like repeats from protein sequences. BMC Bioinform. 8 (2007) - 2006
- [j6]Johannes Söding, Michael Remmert, Andreas Biegert:
HHrep: de novo protein repeat detection and the origin of TIM barrels. Nucleic Acids Res. 34(Web-Server-Issue): 137-142 (2006) - [j5]Andreas Biegert, Christian E. Mayer, Michael Remmert, Johannes Söding, Andrei N. Lupas:
The MPI Bioinformatics Toolkit for protein sequence analysis. Nucleic Acids Res. 34(Web-Server-Issue): 335-339 (2006) - [j4]Johannes Söding, Michael Remmert, Andreas Biegert, Andrei N. Lupas:
HHsenser: exhaustive transitive profile search using HMM-HMM comparison. Nucleic Acids Res. 34(Web-Server-Issue): 374-378 (2006) - 2005
- [j3]Johannes Söding:
Protein homology detection by HMM?CHMM comparison. Bioinform. 21(7): 951-960 (2005) - [j2]Markus Gruber, Johannes Söding, Andrei N. Lupas:
REPPER - repeats and their periodicities in fibrous proteins. Nucleic Acids Res. 33(Web-Server-Issue): 239-243 (2005) - [j1]Johannes Söding, Andreas Biegert, Andrei N. Lupas:
The HHpred interactive server for protein homology detection and structure prediction. Nucleic Acids Res. 33(Web-Server-Issue): 244-248 (2005) - 2003
- [c1]Johannes Söding, Andrei N. Lupas:
0n the Evolution of Proteins from Peptides(Invited Talk). German Conference on Bioinformatics 2003: 95-96
Coauthor Index
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from , , and to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from .
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2024-05-08 01:03 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint