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ORCIDJack Y. Yang
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- affiliation: Harvard University, Harvard Medical School, Cambridge, MA, USA
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2010 – 2019
- 2018
[j34]Ling Hu, Rong Zhang, Qiong Yuan, Yinping Gao, Mary Qu Yang, Chunxiang Zhang, Jiankun Huang, Yufei Sun, William Yang, Jack Y. Yang, Zhen-li Min, Jing Cheng, Youping Deng
, Xiamin Hu:
The emerging role of microRNA-4487/6845-3p in Alzheimer's disease pathologies is induced by Aβ25-35 triggered in SH-SY5Y cell. BMC Syst. Biol. 12(7): 119:1-119:10 (2018)- 2017
- [c36]Dan Li, William Yang, Yifan Zhang, Jack Y. Yang, Weida Tong, Renchu Guan, Mary Qu Yang:
Comprehensive analysis of pulmonary adenocarcinoma in situ (AIS) revealed new insights into lung cancer progression. BIBM 2017: 792-797 - [c35]Yifan Zhang, William Yang, Dan Li, Jack Y. Yang, Renchu Guan, Weida Tong, Mary Qu Yang:
Toward precision breast cancer survival prediction utilizing combined whole genome-wide expression and somatic mutation analysis. BIBM 2017: 830-835 - 2016
- [j33]Wenbing Zhao, William Yang, Honglei Zhang, Jack Y. Yang, Xiong Luo, Yueqin Zhu, Mary Yang, Chaomin Luo:
High-throughput state-machine replication using software transactional memory. J. Supercomput. 72(11): 4379-4398 (2016) - [c34]Wenbing Zhao, Mamdouh Babi, William Yang, Xiong Luo, Yueqin Zhu, Jack Y. Yang, Chaomin Luo, Mary Yang:
Byzantine fault tolerance for collaborative editing with commutative operations. EIT 2016: 246-251 - 2014
- [j32]Jack Y. Yang, A. Keith Dunker, Jun S. Liu, Xiang Qin, Hamid R. Arabnia, William Yang, Andrzej Niemierko, Zhongxue Chen, Zuojie Luo, Liangjiang Wang, Yunlong Liu, Dong Xu, Youping Deng, Weida Tong, Mary Qu Yang:
Advances in translational bioinformatics facilitate revealing the landscape of complex disease mechanisms. BMC Bioinform. 15(S-17): I1 (2014) - [j31]William Yang, Kenji Yoshigoe, Xiang Qin, Jun S. Liu, Jack Y. Yang, Andrzej Niemierko, Youping Deng, Yunlong Liu, A. Keith Dunker, Zhongxue Chen, Liangjiang Wang, Dong Xu, Hamid R. Arabnia, Weida Tong, Mary Qu Yang:
Identification of genes and pathways involved in kidney renal clear cell carcinoma. BMC Bioinform. 15(S-17): S2 (2014) - [j30]Zhongxue Chen, William Yang, Qingzhong Liu, Jack Y. Yang, Jing Li, Mary Yang:
A new statistical approach to combining p-values using gamma distribution and its application to genome-wide association study. BMC Bioinform. 15(S-17): S3 (2014) - [j29]Chang Liu, Lili Lu, Quan Kong, Yan Li, Haihua Wu, William Yang, Shandan Xu, Xinyu Yang, Xiaolei Song, Jack Y. Yang, Mary Qu Yang, Youping Deng:
Developing discriminate model and comparative analysis of differentially expressed genes and pathways for bloodstream samples of diabetes mellitus type 2. BMC Bioinform. 15(S-17): S5 (2014) - 2011
- [j28]Ke Zhang, Yunlong Liu, Jack Y. Yang, Hamid R. Arabnia, Andrzej Niemierko, Arif Ghafoor, Weizhong Li, Youping Deng:
From genes to networks: in systematic points of view. BMC Syst. Biol. 5(S-3): I1 (2011) - [j27]Zhongxue Chen, Jianzhong Liu, Hon Ng, Saralees Nadarajah, Howard L. Kaufman, Jack Y. Yang, Youping Deng:
Statistical methods on detecting differentially expressed genes for RNA-seq data. BMC Syst. Biol. 5(S-3): S1 (2011) - [j26]Walker H. Land Jr., Xingye Qiao, Daniel Margolis, William S. Ford, Christopher T. Paquette, Joseph F. Perez-Rogers, Jeffrey A. Borgia, Jack Y. Yang, Youping Deng:
Kernelized partial least squares for feature reduction and classification of gene microarray data. BMC Syst. Biol. 5(S-3): S13 (2011) - 2010
- [j25]Liangjiang Wang, Caiyan Huang, Mary Qu Yang, Jack Y. Yang:
BindN+ for accurate prediction of DNA and RNA-binding residues from protein sequence features. BMC Syst. Biol. 4(S-1): S3 (2010) - [j24]Yunji Wang, Hai-Chao Han, Jack Y. Yang, Merry Lindsey, Yufang Jin:
A conceptual cellular interaction model of left ventricular remodelling post-MI: dynamic network with exit-entry competition strategy. BMC Syst. Biol. 4(S-1): S5 (2010) - [j23]Xiaolong Zhang, Ting Wang, Huiping Luo, Jack Y. Yang, Youping Deng, Jinshan Tang, Mary Qu Yang:
3D Protein structure prediction with genetic tabu search algorithm. BMC Syst. Biol. 4(S-1): S6 (2010) - [j22]Walker H. Land Jr., Dan Margolis, Ronald Gottlieb, Jack Y. Yang, Elizabeth A. Krupinski:
Improving CT prediction of treatment response in patients with metastatic colorectal carcinoma using statistical learning. Int. J. Comput. Biol. Drug Des. 3(1): 15-18 (2010) - [j21]Zhongxue Chen, Monnie McGee, Qingzhong Liu, Y. Megan Kong, Xudong Huang, Jack Y. Yang, Richard H. Scheuermann:
Identifying Differentially Expressed Genes based on probe level data for GeneChip arrays. Int. J. Comput. Biol. Drug Des. 3(3): 237-257 (2010) - [j20]Tomás Novosád, Václav Snásel, Ajith Abraham, Jack Y. Yang:
Searching Protein 3-D Structures for Optimal Structure Alignment Using Intelligent Algorithms and Data Structures. IEEE Trans. Inf. Technol. Biomed. 14(6): 1378-1386 (2010) - [c33]Guo-Zheng Li, Mingyu You, Lei Ge, Jack Y. Yang, Mary Qu Yang:
Feature selection for semi-supervised multi-label learning with application to gene function analysis. BCB 2010: 354-357 - [e9]Hamid R. Arabnia, Quoc-Nam Tran, Rui Chang, Matthew He, Andy Marsh, Ashu M. G. Solo, Jack Y. Yang:
International Conference on Bioinformatics & Computational Biology, BIOCOMP 2010, July 12-15, 2010, Las Vegas Nevada, USA, 2 Volumes. CSREA Press 2010, ISBN 1-60132-134-1 [contents]
2000 – 2009
- 2009
- [j19]Mary Qu Yang, Jack Y. Yang:
Lecture notes: 2010 and beyond, the decade of high-performance computing for the next-generation sequence analysis. Int. J. Comput. Biol. Drug Des. 2(2): 204-206 (2009) - [j18]Mary Qu Yang, Andrzej Niemierko, Jack Y. Yang, Yufang Jin:
Promoting inter/multidisciplinary education and research in bioinformatics, systems biology and intelligent computing. Int. J. Comput. Biol. Drug Des. 2(3): 207-220 (2009) - [j17]Xue-Qiang Zeng, Guo-Zheng Li, Gengfeng Wu, Jack Y. Yang, Mary Qu Yang:
Irrelevant gene elimination for Partial Least Squares based Dimension Reduction by using feature probes. Int. J. Data Min. Bioinform. 3(1): 85-103 (2009) - [j16]Mingyu You, Guo-Zheng Li, Jack Y. Yang, Mary Qu Yang:
An Enhanced Lipschitz Embedding Classifier for Multi-Emotion Speech Analysis. Int. J. Pattern Recognit. Artif. Intell. 23(8): 1685-1700 (2009) - [j15]Guo-Zheng Li, Hao-Hua Meng, Mary Qu Yang, Jack Y. Yang:
Combining support vector regression with feature selection for multivariate calibration. Neural Comput. Appl. 18(7): 813-820 (2009) - [c32]Su-Fen Chen, Xue-Qiang Zeng, Guo-Zheng Li, Jack Y. Yang, Mary Qu Yang:
Redundant Gene Selection Based on Particle Swarm Optimization. IJCBS 2009: 10-16 - [c31]Kaiqi Xiong, Sang C. Suh, Mary Qu Yang, Jack Y. Yang, Hamid R. Arabnia:
Next Generation Sequence Analysis Using Genetic Algorithms on Multi-core Technology. IJCBS 2009: 190-191 - [c30]Tomás Novosád, Václav Snásel, Ajith Abraham, Jack Y. Yang:
Prosima: Protein Similarity Algorithm. NaBIC 2009: 84-91 - [c29]Mary Qu Yang, Sang C. Suh, Kaiqi Xiong, Jack Y. Yang, Hamid R. Arabnia:
The Impact of Supercomputing in the Next Generation Sequencing Data Mining. PDPTA 2009: 532 - [c28]Tomás Novosád, Václav Snásel, Ajith Abraham, Jack Y. Yang:
YAPS: Yet Another Protein Similarity. SoCPaR 2009: 497-504 - [e8]Joe Zhang, Guo-Zheng Li, Jack Y. Yang:
International Joint Conferences on Bioinformatics, Systems Biology and Intelligent Computing, IJCBS 2009, Shanghai, China, 3-5 August 2009. IEEE Computer Society 2009, ISBN 978-0-7695-3739-9 [contents] - 2008
- [j14]Guo-Zheng Li, Hao-Hua Meng, Wen-Cong Lu, Jack Y. Yang, Mary Qu Yang:
Asymmetric bagging and feature selection for activities prediction of drug molecules. BMC Bioinform. 9(S-6) (2008) - [j13]Xue-Qiang Zeng, Guo-Zheng Li, Jack Y. Yang, Mary Qu Yang, Gengfeng Wu:
Dimension reduction with redundant gene elimination for tumor classification. BMC Bioinform. 9(S-6) (2008) - [j12]Guo-Zheng Li, Jack Y. Yang, Wen-Cong Lu, Dan Li, Mary Qu Yang:
Improving prediction accuracy of drug activities by utilising unlabelled instances with feature selection. Int. J. Comput. Biol. Drug Des. 1(1): 1-13 (2008) - [j11]Liangjiang Wang, Stephanie Jimenez Irausquin, Jack Y. Yang:
Prediction of lipid-interacting amino acid residues from sequence features. Int. J. Comput. Biol. Drug Des. 1(1): 14-25 (2008) - [j10]Jonathan L. Jesneck, Jack Y. Yang:
Promoting synergistic research and education in computational biology and drug design. Int. J. Comput. Biol. Drug Des. 1(3): 219-223 (2008) - [j9]Pan Du, Simon M. Lin, Mary Qu Yang, Jack Y. Yang:
2009 and beyond: the decade of personalised medicine. Int. J. Comput. Biol. Drug Des. 1(4): 329-333 (2008) - [j8]Tian-Yu Liu, Guo-Zheng Li, Jack Y. Yang, Mary Qu Yang:
Feature selection for the imbalanced QSAR problems by using EasyEnsemble. Int. J. Comput. Biol. Drug Des. 1(4): 334-346 (2008) - [j7]Jack Y. Yang, Mary Qu Yang:
Identification of Intrinsically Unstructured Proteins using hierarchical classifier. Int. J. Data Min. Bioinform. 2(2): 121-133 (2008) - [j6]Jack Y. Yang, Mary Qu Yang:
Transforming medicine: functional informatics, drug design, and personalised healthcare. Int. J. Funct. Informatics Pers. Medicine 1(1): 1-7 (2008) - [j5]Walker H. Land Jr., John J. Heine, Thomas Raway, Alda Mizaku, Nataliya Kovalchuk, Jack Y. Yang, Mary Qu Yang:
New statistical learning theory paradigms adapted to breast cancer diagnosis/classification using image and non-image clinical data. Int. J. Funct. Informatics Pers. Medicine 1(2): 111-139 (2008) - [j4]Yuhai Liu, Guo-Zheng Li, Hongyu Zhang, Mary Qu Yang, Jack Y. Yang:
Feature selection for gene function prediction using multi-labelled lazy learning. Int. J. Funct. Informatics Pers. Medicine 1(3): 223-233 (2008) - [j3]Mingyu You, Guo-Zheng Li, Xue-Qiang Zeng, Lei Ge, Lijuan Bi, Suying Huang, Mary Qu Yang, Jack Y. Yang:
A Personalized Traditional Chinese Medicine System in the case of Cai's gynecology. Int. J. Funct. Informatics Pers. Medicine 1(4): 419-438 (2008) - [j2]Yuehui Chen, Feng Chen, Jack Y. Yang, Mary Qu Yang:
Ensemble Voting System for Multiclass protein fold Recognition. Int. J. Pattern Recognit. Artif. Intell. 22(4): 747-763 (2008) - [c27]Yuhai Liu, Guo-Zheng Li, Wenqian Yu, Jianqun Xu, Jack Y. Yang, Mary Qu Yang:
Abnormal Traffic Detection in VoIP by Using Machine Learning Approaches. IC-AI 2008: 295-300 - [c26]Xue-Qiang Zeng, Guo-Zheng Li, Jack Y. Yang, Mary Qu Yang:
A Novel Metric for Redundant Gene Elimination Based on Discriminative Contribution. ISBRA 2008: 256-267 - [c25]Jack Y. Yang, Mary Qu Yang, Hamid R. Arabnia:
High Performance Computing and Computational Intelligence: Link to the Translational Medicine and Personalized Healthcare - Banquet Keynote Lecture. PDPTA 2008: 823-825 - [e7]Hamid R. Arabnia, Mary Qu Yang, Jack Y. Yang:
International Conference on Bioinformatics & Computational Biology, BIOCOMP 2008, July 14-17, 2008, Las Vegas Nevada, USA, 2 Volumes. CSREA Press 2008, ISBN 1-60132-055-8 [contents] - 2007
- [j1]Mary Qu Yang, Jack Y. Yang, Okan K. Ersoy:
Classification of proteins multiple-labelled and single-labelled with protein functional classes. Int. J. Gen. Syst. 36(1): 91-109 (2007) - [c24]A. Keith Dunker, Christopher J. Oldfield, Jingwei Meng, Pedro Romero, Jack Y. Yang, Zoran Obradovic, Vladimir N. Uversky:
Intrinsically Disordered Proteins: Predictions and Applications. BIBE 2007: 1 - [c23]Mary Qu Yang, Jack Y. Yang:
An Investigation into the Feasibility of Detecting Microscopic Disease Using Machine Learning. BIBE 2007: 9-10 - [c22]A. Keith Dunker, Christopher J. Oldfield, Jingwei Meng, Pedro Romero, Jack Y. Yang, Zoran Obradovic, Vladimir N. Uversky:
Intrinsically Disordered Proteins: An Update. BIBE 2007: 49-58 - [c21]Yuehui Chen, Xueqin Zhang, Mary Qu Yang, Jack Y. Yang:
Ensemble of Probabilistic Neural Networks for Protein Fold Recognition. BIBE 2007: 66-70 - [c20]Mehdi Pirooznia, Arun Rawat, Jack Y. Yang, Mary Qu Yang, Ping Gong, Edward J. Perkins, Youping Deng:
An Effective Interwoven Loop Design Application for Two-Channel Microarray Experiments. BIBE 2007: 187-191 - [c19]Jack Y. Yang, Andrzej Niemierko, Mary Qu Yang, Youping Deng:
Non-Monotonic Radio-Sensitivity over Tumor Volumes on Adjuvant Radio Therapy A New Insight on Cell Killing and Modeling. BIBE 2007: 524-531 - [c18]Jiazheng Yuan, Mengxia Zhu, M. Javed Iqbal, Jack Y. Yang, David A. Lightfoot:
A Computational Approach to Understand Arabidopsis thaliana and Soybean Resistance to Fusarium solani (Fsg). BIBE 2007: 585-592 - [c17]Guo-Zheng Li, Hao-Hua Meng, Mary Qu Yang, Jack Y. Yang:
Support Vector Regression with Feature Selection for the Multivariate Calibration of Spectrofluorimetric Determination of Aromatic Amino Acids. BIBE 2007: 842-848 - [c16]Hualong Bu, Guo-Zheng Li, Xue-Qiang Zeng, Jack Y. Yang, Mary Qu Yang:
Feature Selection and Partial Least Squares Based Dimension Reduction for Tumor Classification. BIBE 2007: 967-973 - [c15]Guo-Zheng Li, Xue-Qiang Zeng, Jack Y. Yang, Mary Qu Yang:
Partial Least Squares Based Dimension Reduction with Gene Selection for Tumor Classification. BIBE 2007: 1439-1444 - [c14]Jack Y. Yang, Mary Qu Yang:
The 2007 World Congress in Computer Science, Computer Engineering, and Applied Computing Invited Banquet Keynote Lecture: Using Bioinformatics and Machine Learning to Predict Potential Malignancies. BIOCOMP 2007: 282-288 - [c13]Jack Y. Yang, Guo-Zheng Li, Li-Xin Liu, Mary Qu Yang:
Classification of Brain Glioma by Using Neural Networks Ensemble with Multi-Task Learning. BIOCOMP 2007: 515-522 - [c12]Christopher J. Oldfield, Jingwei Meng, Jack Y. Yang, Vladimir N. Uversky, A. Keith Dunker:
Intrinsic Disorder in Protein-Protein Interaction Networks: Case Studies of Complexes Involving p53 and 14-3-3. BIOCOMP 2007: 553-566 - [c11]Jack Y. Yang, Andrzej Niemierko, Mary Qu Yang, Zuojie Luo, Jianling Li:
Predicting Tumor Malignancies using Combined Computational Intelligence, Bioinformatics and Laboratory Molecular Biology Approaches. CIBCB 2007: 46-53 - [c10]Guo-Zheng Li, Dan Li, Wen-Cong Lu, Jack Y. Yang, Mary Qu Yang:
Feature Selection for Co-Training: A QSAR Study. IC-AI 2007: 138-146 - [c9]Xueqin Zhang, Yuehui Chen, Jack Y. Yang:
Stock Index Forecasting Using PSO Based Selective Neural Network Ensemble. IC-AI 2007: 260-264 - [c8]Yuehui Chen, Feng Chen, Jack Y. Yang:
Evolving MIMO Flexible Neural Trees for Nonlinear System Identification. IC-AI 2007: 373-377 - [c7]Lu-Jin You, Guo-Zheng Li, Jack Y. Yang:
Support Vector Machines Applied to Research of Ancient Chinese Porcelain: Modeling of Jun Glaze. IC-AI 2007: 653-658 - [c6]Guo-Zheng Li, Hao-Hua Meng, Mary Qu Yang, Jack Y. Yang:
Asymmetric Bagging and Feature Selection for Activities Prediction of Drug Molecules. IMSCCS 2007: 108-114 - [e6]Hamid R. Arabnia, Mary Qu Yang, Jack Y. Yang:
International Conference on Bioinformatics & Computational Biology, BIOCOMP 2007, Volume I, June 25-28, 2007, Las Vegas Nevada, USA. CSREA Press 2007, ISBN 1-60132-040-X [contents] - [e5]Hamid R. Arabnia, Mary Qu Yang, Jack Y. Yang:
International Conference on Bioinformatics & Computational Biology, BIOCOMP 2007, Volume II, June 25-28, 2007, Las Vegas Nevada, USA. CSREA Press 2007, ISBN 1-60132-041-8 [contents] - [e4]Hamid R. Arabnia, Jack Y. Yang, Mary Qu Yang:
Proceedings of the 2007 International Conference on Scientific Computing, CSC 2007, June 25-28, 2007, Las Vegas, Nevada, USA. CSREA Press 2007, ISBN 1-60132-037-X [contents] - [e3]Hamid R. Arabnia, Jack Y. Yang, Mary Qu Yang:
Proceedings of the 2007 International Conference on Genetic and Evolutionary Methods, GEM 2007, June 25-28, 2007, Las Vegas, Nevada, USA. CSREA Press 2007, ISBN 1-60132-038-8 [contents] - [e2]Hamid R. Arabnia, Mary Qu Yang, Jack Y. Yang:
Proceedings of the 2007 International Conference on Artificial Intelligence, ICAI 2007, Volume I, June 25-28, 2007, Las Vegas, Nevada, USA. CSREA Press 2007, ISBN 1-60132-023-X [contents] - [e1]Hamid R. Arabnia, Mary Qu Yang, Jack Y. Yang:
Proceedings of the 2007 International Conference on Artificial Intelligence, ICAI 2007, Volume II, June 25-28, 2007, Las Vegas, Nevada, USA. CSREA Press 2007, ISBN 1-60132-024-8 [contents] - 2006
- [c5]Mary Qu Yang, Jack Y. Yang:
IUP: Intrinsically Unstructured Protein predictor - A software tool for analyzing polypeptide sequences. BIBE 2006: 3-11 - [c4]Jack Y. Yang, Mary Qu Yang:
Assessing protein function using a combination of supervised and unsupervised learning. BIBE 2006: 35-44 - [c3]Mary Qu Yang, Jack Y. Yang:
Identification of Intrinsically Unstructured Regions in Proteins Using Primary Structure. BIOCOMP 2006: 303-309 - [c2]Jack Y. Yang, Mary Qu Yang:
Learning from Sequences with Determining Correlation between Transmembrane and Protein Disorder. BIOCOMP 2006: 345-351 - 2005
- [p1]Mary Qu Yang, Okan K. Ersoy, Jack Y. Yang:
Sequential bifurcation Approach to Learning protein Functional Classes. Advances in Bioinformatics and Its Applications 2005 - 2003
- [c1]Jack Y. Yang, Mary Qu Yang, Okan K. Ersoy:
Exploring Protein Functional Relationships Using Genomic Information and Data Mining Techniques. ICANN 2003: 1073-1080
Coauthor Index
Mary Yang
aka: Mary Qu Yang
aka: Mary Qu Yang
[j34] [c36] [c35] [j33] [c34] [j32] [j31] [j30] [j29] [j25] [j23] [c33] [j19] [j18] [j17] [j16] [j15] [c32] [c31] [c29] [j14] [j13] [j12] [j9] [j8] [j7] [j6] [j5] [j4] [j3] [j2] [c27] [c26] [c25] [e7] [j1] [c23] [c21] [c20] [c19] [c17] [c16] [c15] [c14] [c13] [c11] [c10] [c6] [e6] [e5] [e4] [e3] [e2] [e1] [c5] [c4] [c3] [c2] [p1] [c1]
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