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ORCIDGill Bejerano
Person information
- affiliation: Stanford University, USA
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2020 – today
- 2022
[j17]Yosuke Tanigawa
, Ethan Dyer, Gill Bejerano:
WhichTF is functionally important in your open chromatin data? PLoS Comput. Biol. 18(8) (2022)- 2021
- [j16]Jacob A. Blindenbach, Karthik Anand Jagadeesh, Gill Bejerano, David J. Wu:
Avoiding genetic racial profiling in criminal DNA profile databases. Nat. Comput. Sci. 1(4): 272-279 (2021)
2010 – 2019
- 2019
- [j15]Yatish Turakhia, Gill Bejerano, William J. Dally:
Darwin: A Genomics Coprocessor. IEEE Micro 39(3): 29-37 (2019) - [c11]Yatish Turakhia, Sneha D. Goenka, Gill Bejerano, William J. Dally:
Darwin-WGA: A Co-processor Provides Increased Sensitivity in Whole Genome Alignments with High Speedup. HPCA 2019: 359-372 - [c10]Yatish Turakhia, Gill Bejerano, William J. Dally:
Darwin: A Genomics Co-processor Provides up to 15, 000X Acceleration on Long Read Assembly. USENIX ATC 2019 - 2018
- [c9]Yatish Turakhia, Gill Bejerano, William J. Dally:
Darwin: A Genomics Co-processor Provides up to 15, 000X Acceleration on Long Read Assembly. ASPLOS 2018: 199-213 - 2016
- [j14]Harendra Guturu, Sandeep Chinchali, Shoa L. Clarke, Gill Bejerano:
Erosion of Conserved Binding Sites in Personal Genomes Points to Medical Histories. PLoS Comput. Biol. 12(2) (2016) - 2014
- [j13]Geetu Tuteja, Karen Betancourt Moreira, Tisha Chung, Jenny Chen, Aaron M. Wenger, Gill Bejerano:
Automated Discovery of Tissue-Targeting Enhancers and Transcription Factors from Binding Motif and Gene Function Data. PLoS Comput. Biol. 10(1) (2014)
2000 – 2009
- 2007
- [j12]Robert M. Kuhn, Donna Karolchik, Ann S. Zweig, Heather Trumbower, Daryl J. Thomas, Archana Thakkapallayil, Charles W. Sugnet, Mario Stanke, Kayla E. Smith, Adam C. Siepel, Kate R. Rosenbloom, Brooke L. Rhead, Brian J. Raney, Andy Pohl, Jakob Skou Pedersen, Fan Hsu, Angela S. Hinrichs, Rachel A. Harte, Mark Diekhans, Hiram Clawson, Gill Bejerano, Galt P. Barber, Robert Baertsch, David Haussler, W. James Kent:
The UCSC genome browser database: update 2007. Nucleic Acids Res. 35(Database-Issue): 668-673 (2007) - 2006
- [j11]Gill Bejerano:
Branch and bound computation of exact p-values. Bioinform. 22(17): 2158-2159 (2006) - [j10]Angela S. Hinrichs, Donna Karolchik, Robert Baertsch, Galt P. Barber, Gill Bejerano, Hiram Clawson, Mark Diekhans, Terrence S. Furey, Rachel A. Harte, Fan Hsu, Jennifer Hillman-Jackson, Robert M. Kuhn, Jakob Skou Pedersen, Andy Pohl, Brian J. Raney, Kate R. Rosenbloom, Adam C. Siepel, Kayla E. Smith, Charles W. Sugnet, A. Sultan-Qurraie, Daryl J. Thomas, Heather Trumbower, Ryan J. Weber, M. Weirauch, Ann S. Zweig, David Haussler, W. James Kent:
The UCSC Genome Browser Database: update 2006. Nucleic Acids Res. 34(Database-Issue): 590-598 (2006) - [j9]Jakob Skou Pedersen, Gill Bejerano, Adam C. Siepel, Kate R. Rosenbloom, Kerstin Lindblad-Toh, Eric S. Lander, Jim Kent, Webb Miller, David Haussler:
Identification and Classification of Conserved RNA Secondary Structures in the Human Genome. PLoS Comput. Biol. 2(4) (2006) - 2004
- [j8]Gill Bejerano:
Algorithms for variable length Markov chain modeling. Bioinform. 20(5): 788-789 (2004) - [j7]Gill Bejerano, Nir Friedman, Naftali Tishby:
Efficient Exact p-Value Computation for Small Sample, Sparse, and Surprising Categorical Data. J. Comput. Biol. 11(5): 867-886 (2004) - [c8]Gill Bejerano, David Haussler, Mathieu Blanchette:
Into the heart of darkness: large-scale clustering of human non-coding DNA. ISMB/ECCB (Supplement of Bioinformatics) 2004: 40-48 - 2003
- [b1]Gill Bejerano:
Automata learning and stocahstic modeling for biosequence analysis (למידת אוטומטים ומידול סטוכסטי לצרכי ניתוח רצפי מולקולות ביולוגיות.). Hebrew University of Jerusalem, Israel, 2003 - [j6]Shlomo Dubnov, Gérard Assayag, Olivier Lartillot, Gill Bejerano:
Using Machine-Learning Methods for Musical Style Modeling. Computer 36(10): 73-80 (2003) - [j5]Noam Slonim, Gill Bejerano, Shai Fine, Naftali Tishby:
Discriminative Feature Selection via Multiclass Variable Memory Markov Model. EURASIP J. Adv. Signal Process. 2003(2): 93-102 (2003) - [c7]Gill Bejerano:
Efficient exact value computation and applications to biosequence analysis. RECOMB 2003: 38-47 - 2002
- [c6]Noam Slonim, Gill Bejerano, Shai Fine, Naftali Tishby:
Discriminative Feature Selection via Multiclass Variable Memory Markov Model. ICML 2002: 578-585 - 2001
- [j4]Gill Bejerano, Golan Yona:
Variations on probabilistic suffix trees: statistical modeling and prediction of protein families. Bioinform. 17(1): 23-43 (2001) - [j3]Gill Bejerano, Yevgeny Seldin, Hanah Margalit, Naftali Tishby:
Markovian domain fingerprinting: statistical segmentation of protein sequences. Bioinform. 17(10): 927-934 (2001) - [j2]Ruti Hershberg, Gill Bejerano, Alberto Santos-Zavaleta, Hanah Margalit:
PromEC: An updated database of Escherichia coli mRNA promoters with experimentally identified transcriptional start sites. Nucleic Acids Res. 29(1): 277-0 (2001) - [c5]Olivier Lartillot, Shlomo Dubnov, Gérard Assayag, Gill Bejerano:
Automatic Modeling of Musical Style. ICMC 2001 - [c4]Yevgeny Seldin, Gill Bejerano, Naftali Tishby:
Unsupervised Sequence Segmentation by a Mixture of Switching Variable Memory Markov Sources. ICML 2001: 513-520 - [c3]Yoseph Barash, Gill Bejerano, Nir Friedman:
A Simple Hyper-Geometric Approach for Discovering Putative Transcription Factor Binding Sites. WABI 2001: 278-293 - 2000
- [j1]Alberto Apostolico, Gill Bejerano:
Optimal Amnesic Probabilistic Automata or How to Learn and Classify Proteins in Linear Time and Space. J. Comput. Biol. 7(3-4): 381-393 (2000) - [c2]Alberto Apostolico, Gill Bejerano:
Optimal amnesic probabilistic automata or how to learn and classify proteins in linear time and space. RECOMB 2000: 25-32
1990 – 1999
- 1999
- [c1]Gill Bejerano, Golan Yona:
Modeling protein families using probabilistic suffix trees. RECOMB 1999: 15-24
Coauthor Index
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