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ORCIDYatish Turakhia
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2020 – today
- 2024
[c9]Sumit Walia, Cheng Ye, Arkid Bera, Dhruvi Lodhavia, Yatish Turakhia:
TALCO: Tiling Genome Sequence Alignment Using Convergence of Traceback Pointers. HPCA 2024: 91-107- [i5]Yingqi Cao, Anshu Gupta, Jason Liang, Yatish Turakhia:
DP-HLS: A High-Level Synthesis Framework for Accelerating Dynamic Programming Algorithms in Bioinformatics. CoRR abs/2411.03398 (2024) - 2023
- [j9]Kyle Smith
, Cheng Ye, Yatish Turakhia:
Tracking and curating putative SARS-CoV-2 recombinants with RIVET. Bioinform. 39(9) (2023) - [j8]Weiwen Wang, James Barbetti, Thomas Wong, Bryan Thornlow, Russell Corbett-Detig, Yatish Turakhia, Robert Lanfear, Bui Quang Minh:
DecentTree: scalable Neighbour-Joining for the genomic era. Bioinform. 39(9) (2023) - 2022
- [j7]Cheng Ye, Bryan Thornlow, Angie S. Hinrichs, Alexander Kramer, Cade Mirchandani, Devika Torvi, Robert Lanfear, Russell Corbett-Detig, Yatish Turakhia:
matOptimize: a parallel tree optimization method enables online phylogenetics for SARS-CoV-2. Bioinform. 38(15): 3734-3740 (2022) - [j6]Jakob McBroome, Yatish Turakhia, Russell Corbett-Detig:
BTE: a Python module for pandemic-scale mutation-annotated phylogenetic trees. J. Open Source Softw. 7(77): 4433 (2022) - [j5]Nicola De Maio, William R. Boulton, Lukas Weilguny, Conor R. Walker, Yatish Turakhia, Russell Corbett-Detig, Nick Goldman:
phastSim: Efficient simulation of sequence evolution for pandemic-scale datasets. PLoS Comput. Biol. 18(4) (2022) - [c8]Yatish Turakhia:
HiCOMB 2022 Invited Speaker: Pandemic-scale Phylogenetics. IPDPS Workshops 2022: 143 - 2021
- [j4]Alexander Kramer, Yatish Turakhia, Russell Corbett-Detig:
ShUShER: private browser-based placement of sensitive genome samples on phylogenetic trees. J. Open Source Softw. 6(66): 3677 (2021) - 2020
- [j3]William J. Dally, Yatish Turakhia, Song Han:
Domain-specific hardware accelerators. Commun. ACM 63(7): 48-57 (2020) - [c7]Sneha D. Goenka, Yatish Turakhia, Benedict Paten, Mark Horowitz:
SegAlign: a scalable GPU-based whole genome aligner. SC 2020: 39
2010 – 2019
- 2019
- [j2]Yatish Turakhia, Gill Bejerano, William J. Dally:
Darwin: A Genomics Coprocessor. IEEE Micro 39(3): 29-37 (2019) - [c6]Yatish Turakhia, Sneha D. Goenka, Gill Bejerano, William J. Dally:
Darwin-WGA: A Co-processor Provides Increased Sensitivity in Whole Genome Alignments with High Speedup. HPCA 2019: 359-372 - [c5]Roman Snytsar, Yatish Turakhia:
Parallel Approach to Sliding Window Sums. ICA3PP (2) 2019: 19-26 - [c4]Yatish Turakhia, Gill Bejerano, William J. Dally:
Darwin: A Genomics Co-processor Provides up to 15, 000X Acceleration on Long Read Assembly. USENIX ATC 2019 - 2018
- [c3]Yatish Turakhia, Gill Bejerano, William J. Dally:
Darwin: A Genomics Co-processor Provides up to 15, 000X Acceleration on Long Read Assembly. ASPLOS 2018: 199-213 - [i4]Roman Snytsar, Yatish Turakhia:
Parallel approach to sliding window sums. CoRR abs/1811.10074 (2018) - 2017
- [j1]Yatish Turakhia, Guangshuo Liu, Siddharth Garg, Diana Marculescu:
Thread Progress Equalization: Dynamically Adaptive Power-Constrained Performance Optimization of Multi-Threaded Applications. IEEE Trans. Computers 66(4): 731-744 (2017) - [i3]Yatish Turakhia, Subhasis Das, Tor M. Aamodt, William J. Dally:
HoLiSwap: Reducing Wire Energy in L1 Caches. CoRR abs/1701.03878 (2017) - 2016
- [i2]Yatish Turakhia, Guangshuo Liu, Siddharth Garg, Diana Marculescu:
Thread Progress Equalization: Dynamically Adaptive Power and Performance Optimization of Multi-threaded Applications. CoRR abs/1603.06346 (2016) - 2015
- [i1]Vinay B. Y. Kumar, Pinalkumar Engineer, Mandar Datar, Yatish Turakhia, Saurabh Agarwal, Sanket Diwale, Sachin B. Patkar:
Framework for Application Mapping over Packet-Switched Network of FPGAs: Case Studies. CoRR abs/1508.06823 (2015) - 2013
- [c2]Yatish Turakhia, Bharathwaj Raghunathan, Siddharth Garg, Diana Marculescu:
HaDeS: architectural synthesis for <u>h</u>eterogeneous <u>d</u>ark <u>s</u>ilicon chip multi-processors. DAC 2013: 173:1-173:7 - [c1]Bharathwaj Raghunathan, Yatish Turakhia, Siddharth Garg, Diana Marculescu:
Cherry-picking: exploiting process variations in dark-silicon homogeneous chip multi-processors. DATE 2013: 39-44
Coauthor Index
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