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ORCIDBjörn Sommer 0001
Bjorn Sommer 0001
Person information
- affiliation: Royal College of Art, London, United Kingdom
- affiliation: Bielefeld University, Bio-/Medical Informatics Department, Germany
- affiliation: University of Konstanz, Computational Life Sciences, Germany
- affiliation: Monash University, Faculty of Information Technology, Melbourne, Australia
Other persons with the same name
- Björn Sommer 0002 — Drees & Sommer, Cologne, Germany
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Books and Theses
- 2013
[b1]Björn Sommer:
CELLmicrocosmos - Integrative cell modeling at the molecular, mesoscopic and functional level. Bielefeld University, 2013
Journal Articles
- 2024
- [j35]Renata G. Raidou, Bjorn Sommer, Torsten W. Kuhlen, Michael Krone, Thomas Schultz, Hsiang-Yun Wu:
Foreword special section on VSI: C&G VCBM 2022. Comput. Graph. 119: 103916 (2024) - [j34]Martin Golebiewski
, Gary D. Bader, Padraig Gleeson, Thomas E. Gorochowski, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber:
Specifications of standards in systems and synthetic biology: status, developments, and tools in 2024. J. Integr. Bioinform. 21(1) (2024) - [j33]Can Türker, Christian Panse, Björn Sommer, Marcel Friedrichs, Ralf Hofestädt:
International symposium on integrative bioinformatics 2024 - editorial. J. Integr. Bioinform. 21(3) (2024) - 2023
- [j32]Martin Kern, Sabrina Jaeger-Honz, Falk Schreiber, Björn Sommer:
APL@voro - interactive visualization and analysis of cell membrane simulations. Bioinform. 39(2) (2023) - [j31]Jan Byska, Michael Krone, Björn Sommer:
Foreword: Special section on Molecular Graphics and Visual Analysis of Molecular Data (MolVA 2023). Comput. Graph. 112: 5 (2023) - [j30]Matthias König, Padraig Gleeson, Martin Golebiewski, Thomas E. Gorochowski, Michael Hucka, Sarah M. Keating, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber:
Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022. J. Integr. Bioinform. 20(1) (2023) - 2022
- [j29]Kay Nieselt, Steffen Oeltze-Jafra, Thomas Schultz, Noeska N. Smit, Björn Sommer:
Foreword. Comput. Graph. 108: 4- (2022) - [j28]Matthias Kraus, Johannes Fuchs, Björn Sommer, Karsten Klein, Ulrich Engelke, Daniel A. Keim, Falk Schreiber:
Immersive Analytics with Abstract 3D Visualizations: A Survey. Comput. Graph. Forum 41(1): 201-229 (2022) - [j27]Björn Sommer, Daisuke Inoue, Marc Baaden:
Design X Bioinformatics: a community-driven initiative to connect bioinformatics and design. J. Integr. Bioinform. 19(2) (2022) - 2021
- [j26]Jan Byska, Michael Krone, Bjorn Sommer:
Foreword to the special section on molecular graphics and visual analysis of molecular data (MolVA 2021). Comput. Graph. 99: 7- (2021) - [j25]Falk Schreiber, Padraig Gleeson, Martin Golebiewski, Thomas E. Gorochowski, Michael Hucka, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath:
Specifications of standards in systems and synthetic biology: status and developments in 2021. J. Integr. Bioinform. 18(3) (2021) - [j24]Karsten Klein, Michael Aichem, Ying Zhang, Stefan Erk, Björn Sommer, Falk Schreiber:
TEAMwISE: synchronised immersive environments for exploration and analysis of animal behaviour. J. Vis. 24(4): 845-859 (2021) - 2020
- [j23]Falk Schreiber, Björn Sommer, Tobias Czauderna, Martin Golebiewski, Thomas E. Gorochowski, Michael Hucka, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Dagmar Waltemath:
Specifications of standards in systems and synthetic biology: status and developments in 2020. J. Integr. Bioinform. 17(2-3) (2020) - 2019
- [j22]Falk Schreiber, Björn Sommer, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Dagmar Waltemath:
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019. J. Integr. Bioinform. 16(2) (2019) - [j21]Björn Sommer:
The CELLmicrocosmos Tools: A Small History of Java-Based Cell and Membrane Modelling Open Source Software Development. J. Integr. Bioinform. 16(3) (2019) - [j20]Marcel Friedrichs, Alban Shoshi, Piotr Chmura, Jon C. Ison, Veit Schwämmle, Falk Schreiber, Ralf Hofestädt, Björn Sommer:
JIB.tools 2.0 - A Bioinformatics Registry for Journal Published Tools with Interoperability to bio.tools. J. Integr. Bioinform. 16(4) (2019) - 2018
- [j19]Falk Schreiber, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath:
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2017. J. Integr. Bioinform. 15(1) (2018) - [j18]Niklas Biere, Mehmood Ghaffar, Anja Doebbe, Daniel Jäger, Nils Rothe, Benjamin M. Friedrich, Ralf Hofestädt, Falk Schreiber, Olaf Kruse, Björn Sommer:
Heuristic Modeling and 3D Stereoscopic Visualization of a Chlamydomonas reinhardtii Cell. J. Integr. Bioinform. 15(2) (2018) - [j17]Björn Sommer, Marc Baaden, Michael Krone, Andrew J. Woods:
From Virtual Reality to Immersive Analytics in Bioinformatics. J. Integr. Bioinform. 15(2) (2018) - 2017
- [j16]Björn Sommer, Falk Schreiber:
Integration and virtual reality exploration of biomedical data with CmPI and VANTED. it Inf. Technol. 59(4): 181 (2017) - [j15]Ralf Hofestädt, Falk Schreiber, Björn Sommer, Jens Allmer:
Computational miRNomics - Integrative Approaches. J. Integr. Bioinform. 14(1) (2017) - 2016
- [j14]Falk Schreiber, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Nicolas Le Novère, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath:
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2016. J. Integr. Bioinform. 13(3) (2016) - [j13]Gökhan Kovanci, Mehmood Ghaffar, Björn Sommer:
Web-based hybrid-dimensional Visualization and Exploration of Cytological Localization Scenarios. J. Integr. Bioinform. 13(4) (2016) - [j12]Qilin Li, Yincong Zhou, Yingmin Jiao, Zhao Zhang, Lin Bai, Li Tong, Xiong Yang, Björn Sommer, Ralf Hofestädt, Ming Chen:
DaTo: an atlas of biological databases and tools. J. Integr. Bioinform. 13(4) (2016) - 2015
- [j11]Falk Schreiber, Gary D. Bader, Martin Golebiewski, Michael Hucka, Benjamin Kormeier, Nicolas Le Novère, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath, Stephan Weise:
Specifications of Standards in Systems and Synthetic Biology. J. Integr. Bioinform. 12(2) (2015) - 2014
- [j10]Gunther Lukat, Björn Sommer, Jens Krüger:
Membrane simulation analysis using Voronoi tessellation. J. Cheminformatics 6(S-1): 23 (2014) - [j9]Björn Sommer, Christian Bender, Tobias Hoppe, Christian Gamroth, Lukas Jelonek:
Stereoscopic cell visualization: from mesoscopic to molecular scale. J. Electronic Imaging 23(1): 011007 (2014) - 2013
- [j8]Björn Sommer, Benjamin Kormeier, Pavel Demenkov, Patrizio Arrigo, Klaus Hippe, Özgür Ates, Alexey V. Kochetov, Vladimir A. Ivanisenko, Nikolay A. Kolchanov, Ralf Hofestädt:
Subcellular Localization Charts: a New Visual Methodology for the Semi-Automatic Localization of protein-Related Data Sets. J. Bioinform. Comput. Biol. 11(1) (2013) - [j7]Gunther Lukat, Jens Krüger, Björn Sommer:
APL@Voro: A Voronoi-Based Membrane Analysis Tool for GROMACS Trajectories. J. Chem. Inf. Model. 53(11): 2908-2925 (2013) - [j6]Ralf Hofestädt, Benjamin Kormeier, Matthias Lange, Falk Schreiber, Björn Sommer, Stephan Weise:
Editorial. J. Integr. Bioinform. 10(1) (2013) - 2012
- [j5]Sebastian Rubert, Christian Gamroth, André J. Heissmann, Gunther Lukat, Ralf Rotzoll, Alexander Schäfer, Jens Krüger, Björn Sommer:
The GMX-Plugin for the CELLmicrocosmos MembraneEditor. J. Cheminformatics 4(S-1): 49 (2012) - 2011
- [j4]Björn Sommer, Tim Dingersen, Christian Gamroth, André J. Heissmann, Gunther Lukat, Ralf Rotzoll, Sebastian Rubert, Alexander Schäfer, Jens Krüger:
Coarse-grained and all-atom MD simulations with Gromacs based on CELLmicrocosmos 2.2 model membranes. J. Cheminformatics 3(S-1): 43 (2011) - [j3]Björn Sommer, Tim Dingersen, Christian Gamroth, Sebastian E. Schneider, Sebastian Rubert, Jens Krüger, Karl-Josef Dietz:
CELLmicrocosmos 2.2 MembraneEditor: A Modular Interactive Shape-Based Software Approach To Solve Heterogeneous Membrane Packing Problems. J. Chem. Inf. Model. 51(5): 1165-1182 (2011) - 2010
- [j2]Björn Sommer, Tim Dingersen, Sebastian E. Schneider, Sebastian Rubert, Christian Gamroth:
CELLmicrocosmos 2.2: advancements and applications in modeling of three-dimensional PDB membranes. J. Cheminformatics 2(S-1): 21 (2010) - [j1]Björn Sommer, Evgeny S. Tiys, Benjamin Kormeier, Klaus Hippe, Sebastian Janowski, Timofey V. Ivanisenko, Anatoly O. Bragin, Patrizio Arrigo, Pavel Demenkov, Alexey V. Kochetov, Vladimir A. Ivanisenko, Nikolay A. Kolchanov, Ralf Hofestädt:
Visualization and Analysis of a Cardio Vascular Disease- and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches. J. Integr. Bioinform. 7(1) (2010)
Conference and Workshop Papers
- 2021
- [c22]Björn Sommer:
Hybrid Stereoscopic Photography - Analogue Stereo Photography meets the Digital Age with the StereoCompass app. SD&A 2021: 1-10 - [c21]Andrew J. Woods, Nicolas S. Holliman, Gregg E. Favalora, Takashi Kawai, Björn Sommer:
32nd Annual Stereoscopic Displays and Applications Conference - Introduction. SD&A 2021: 1-7 - 2020
- [c20]Nurul 'Ayn Ahmad Sayuti, Bjorn Sommer, Saeema Ahmed-Kristensen:
Bio-related Design Genres: A Survey on Familiarity and Potential Applications. ArtsIT 2020: 379-393 - [c19]Zidong Lin, Bjorn Sommer, Saeema Ahmed-Kristensen:
IoT Product Pleasurability - Investigating the Pleasurable User Experiences Between Conventional Products and IoT Products Through Watches. ArtsIT 2020: 394-408 - [c18]Björn Sommer, Chang Hee Lee, Nat Martin, Vanna Savina Torrisi:
Immersive Design Engineering. SD&A 2020: 1-16 - [c17]Andrew J. Woods, Nicolas S. Holliman, Gregg E. Favalora, Takashi Kawai, Björn Sommer:
31st Annual Stereoscopic Displays and Applications Conference - Introduction. SD&A 2020: 1-8 - [c16]Beatrice Giuliari, Manuel Kösters, Jan Zhou, Tim Dingersen, André J. Heissmann, Ralf Rotzoll, Jens Krüger, Alejandro Giorgetti, Björn Sommer:
The Vesicle Builder - A Membrane Packing Algorithm for the CELLmicrocosmos MembraneEditor. MolVa@Eurographics/EuroVis 2020: 7-15 - 2019
- [c15]Björn Sommer, Alexandra Diehl, Michael Aichem, Philipp Meschenmoser, Kim Rehberg, David Weber, Ying Zhang, Karsten Klein, Daniel A. Keim, Falk Schreiber:
Tiled Stereoscopic 3D Display Wall - Concept, Applications and Evaluation. SD&A 2019: 1-15 - [c14]Andrew J. Woods, Nicolas S. Holliman, Gregg E. Favalora, Takashi Kawai, Björn Sommer:
30th Annual Stereoscopic Displays and Applications Conference - Introduction. SD&A 2019: 1-7 - [c13]Bjorn Sommer, Stefan P. Feyer, Daniel Klinkhammer, Karsten Klein, Jonathan Wieland, Daniel Fink, Wolfgang Fiedler, Andrea Flack, Máté Nagy, Martin Wikelski, Harald Reiterer, Falk Schreiber:
BinocularsVR - A VR experience for the exhibition "From Lake Constance to Africa, a long distance travel with ICARUS". ERVR 2019 - [c12]Karsten Klein, Michael Aichem, Björn Sommer, Stefan Erk, Ying Zhang, Falk Schreiber:
TEAMwISE: Synchronised Immersive Environments for Exploration and Analysis of Movement Data. VINCI 2019: 9:1-9:5 - 2018
- [c11]Andrew J. Woods, Nicolas S. Holliman, Gregg E. Favalora, Takashi Kawai, Björn Sommer:
Stereoscopic Displays and Applications XXIX - Introduction. SD&A 2018: 1-7 - [c10]Artur Baltabayev, Alexej Gluschkow, Johannes Blank, Gero Birkhölzer, Jean Büsche, Martin Kern, Fabian Klopfer, Lisa-Maria Mayer, Gabriel Scheibler, Karsten Klein, Falk Schreiber, Björn Sommer:
Virtual Reality for Sensor Data Visualization and Analysis. ERVR 2018 - [c9]Yunlong Wang, Corinna Breitinger, Björn Sommer, Falk Schreiber, Harald Reiterer:
Comparing Sequential and Temporal Patterns from Human Mobility Data for Next-Place Prediction. UMAP (Adjunct Publication) 2018: 157-164 - [c8]Mehmood Ghaffar, Niklas Biere, Daniel Jäger, Karsten Klein, Falk Schreiber, Olaf Kruse, Björn Sommer:
3D Modelling and Visualisation of Heterogeneous Cell Membranes in Blender. VINCI 2018: 64-71 - 2017
- [c7]Björn Sommer, David G. Barnes, Sarah E. Boyd, Tom Chandler, Maxime Cordeil, Tobias Czauderna, Matthias Klapperstück, Karsten Klein, Toàn D. Nguyên, Hieu T. Nim, Kingsley Stephens, Dany Vohl, Stephen Jia Wang, Elliott Wilson, Yan Zhu, Jian Li, Jon McCormack, Kim Marriott, Falk Schreiber:
3D-Stereoscopic Immersive Analytics Projects at Monash University and University of Konstanz. SD&A 2017: 179-187 - [c6]Hieu T. Nim, Björn Sommer, Karsten Klein, Andrea Flack, Kamran Safi, Máté Nagy, Wolfgang Fiedler, Martin Wikelski, Falk Schreiber:
Design Considerations for Immersive Analytics of Bird Movements Obtained by Miniaturised GPS Sensors. VCBM 2017: 27-31 - 2016
- [c5]Hieu T. Nim, Mengyang Wang, Yujie Zhu, Björn Sommer, Falk Schreiber, Sarah E. Boyd, Stephen Jia Wang:
Communicating the Effect of Human Behaviour on the Great Barrier Reef via Mixed Reality Visualisation. BDVA 2016: 1-6 - [c4]Björn Sommer, Andreas Hamacher, Owen Kaluza, Tobias Czauderna, Matthias Klapperstück, Niklas Biere, Marco Civico, Bruce H. Thomas, David G. Barnes, Falk Schreiber:
Stereoscopic Space Map - Semi-immersive Configuration of 3D-stereoscopic Tours in Multi-display Environments. SD&A 2016: 1-9 - 2015
- [c3]Björn Sommer, Stephen Jia Wang, Lifeng Xu, Ming Chen, Falk Schreiber:
Hybrid-Dimensional Visualization and Interaction - Integrating 2D and 3D Visualization with Semi-Immersive Navigation Techniques. BDVA 2015: 65-72 - 2014
- [c2]Thomas Waltemate, Björn Sommer, Mario Botsch:
Membrane Mapping: Combining Mesoscopic and Molecular Cell Visualization. VCBM 2014: 89-96 - 2010
- [c1]Björn Sommer, Jörn Künsemöller, Norbert Sand, Arne Husemann, Madis Rumming, Benjamin Kormeier:
CELLmicrocosmos 4.1 - An Interactive Approach to Integrating Spatially Localized Metabolic Networks into a Virtual 3D Cell Environment. BIOINFORMATICS 2010: 90-95
Parts in Books or Collections
- 2018
- [p2]Tobias Czauderna, Jason Haga, Jinman Kim, Matthias Klapperstück, Karsten Klein, Torsten W. Kuhlen, Steffen Oeltze-Jafra, Björn Sommer, Falk Schreiber:
Immersive Analytics Applications in Life and Health Sciences. Immersive Analytics 2018: 289-330 - 2014
- [p1]Björn Sommer:
Network Analysis and Integration in a Virtual Cell Environment. Approaches in Integrative Bioinformatics 2014: 275-297
Editorship
- 2023
- [e7]Jan Byska, Michael Krone, Björn Sommer:
Workshop on Molecular Graphics and Visual Analysis of Molecular Data 2023, MolVA@EuroVis 2023, Leipzig, Germany, June 12, 2023. Eurographics Association 2023, ISBN 978-3-03868-225-7 [contents] - 2022
- [e6]Renata G. Raidou, Björn Sommer, Torsten W. Kuhlen, Michael Krone, Thomas Schultz, Hsiang-Yun Wu:
VCBM 2022: Eurographics Workshop on Visual Computing for Biology and Medicine, Vienna, Austria, September 22 - 23, 2022. Eurographics Association 2022 [contents] - 2021
- [e5]Jan Byska, Michael Krone, Björn Sommer:
4th Workshop on Molecular Graphics and Visual Analysis of Molecular Data, MolVa@EuroVis 2021, Virtual Event, Switzerland, June 14, 2021. Eurographics Association 2021, ISBN 978-3-03868-145-8 [contents] - [e4]Steffen Oeltze-Jafra, Noeska N. Smit, Björn Sommer, Kay Nieselt, Thomas Schultz:
VCBM 2021: 11th Eurographics Workshop on Visual Computing for Biology and Medicine, Paris, France, 22-24 September 2021. Eurographics Association 2021 [contents] - 2020
- [e3]Jan Byska, Michael Krone, Björn Sommer:
3rd Workshop on Molecular Graphics and Visual Analysis of Molecular Data, MolVA@Eurographics/EuroVis 2020, Norrköping, Sweden, May 25, 2020 [online only]. Eurographics Association 2020, ISBN 978-3-03868-114-4 [contents] - 2019
- [e2]Jan Byska, Michael Krone, Björn Sommer:
2nd Workshop on Molecular Graphics and Visual Analysis of Molecular Data, MolVA@EuroVis 2019, Porto, Portugal, June 3, 2019. Eurographics Association 2019, ISBN 978-3-03868-085-7 [contents] - 2018
- [e1]Jan Byska, Michael Krone, Björn Sommer:
1st Workshop on Molecular Graphics and Visual Analysis of Molecular Data, MolVA@EuroVis 2018, Brno, Czech Republic, June 4, 2018. Eurographics Association 2018, ISBN 978-3-03868-061-1 [contents]
Informal and Other Publications
- 2018
- [i1]Yunlong Wang, Björn Sommer, Falk Schreiber, Harald Reiterer:
Clustering with Temporal Constraints on Spatio-Temporal Data of Human Mobility. CoRR abs/1807.00546 (2018)
Coauthor Index
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