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2000 – 2009
- 2008
[c5]Thomas Abeel
, Yvan Saeys, Pierre Rouzé, Yves Van de Peer:
ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles. ISMB 2008: 24-31- 2007
- [j15]Yvan Saeys, Pierre Rouzé, Yves Van de Peer:
In search of the small ones: improved prediction of short exons in vertebrates, plants, fungi and protists. Bioinform. 23(4): 414-420 (2007) - 2005
- [j14]Sven Degroeve, Yvan Saeys, Bernard De Baets, Pierre Rouzé, Yves Van de Peer:
SpliceMachine: predicting splice sites from high-dimensional local context representations. Bioinform. 21(8): 1332-1338 (2005) - [j13]Sébastien Aubourg, Véronique Brunaud, Clémence Bruyère, J. Mark Cock, Richard Cooke, Annick Cottet, Arnaud Couloux, Patrice Déhais, Gilbert Deléage, Aymeric Duclert, Manuel Echeverria, Aimée Eschbach, Denis Falconet, Ghislain Filippi, Christine Gaspin, Christophe Geourjon, Jean-Michel Grienenberger, Guy Houlné, Elisabeth Jamet, Frédéric Lechauve, Olivier Leleu, Philippe Leroy, Régis Mache, Christian Meyer, Hafed Nedjari, Ioan Negrutiu, Valérie Orsini, Eric Peyretaillade, Cyril Pommier, Jeroen Raes, Jean-Loup Risler, Stéphane Rivière, Stephane Rombauts, Pierre Rouzé, Michel Schneider, Philippe Schwob, Ian Small, Ghislain Soumayet-Kampetenga, Darko Stankovski, Claire Toffano, Michael Tognolli, Michel Caboche, Alain Lecharny:
GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts. Nucleic Acids Res. 33(Database-Issue): 641-646 (2005) - 2004
- [j12]Eric Bonnet, Jan Wuyts, Pierre Rouzé, Yves Van de Peer:
Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences. Bioinform. 20(17): 2911-2917 (2004) - [j11]Yvan Saeys, Sven Degroeve, Dirk Aeyels, Pierre Rouzé, Yves Van de Peer:
Feature selection for splice site prediction: A new method using EDA-based feature ranking. BMC Bioinform. 5: 64 (2004) - 2003
- [j10]Stephane Rombauts, Yves Van de Peer, Pierre Rouzé:
AFLPinSilico, simulating AFLP fingerprints. Bioinform. 19(6): 776-777 (2003) - [j9]Vincent Thareau, Patrice Déhais, Carine Serizet, Pierre Hilson, Pierre Rouzé, Sébastien Aubourg:
Automatic design of gene-specific sequence tags for genome-wide functional studies. Bioinform. 19(17): 2191-2198 (2003) - [j8]Mark L. Crowe, Carine Serizet, Vincent Thareau, Sébastien Aubourg, Pierre Rouzé, Pierre Hilson, Jim Beynon, Peter Weisbeek, Paul van Hummelen, Philippe Reymond, Javier Paz-Ares, Wilfried Nietfeld, Martin Trick:
CATMA: a complete Arabidopsis GST database. Nucleic Acids Res. 31(1): 156-158 (2003) - [j7]Philippe Blayo, Pierre Rouzé, Marie-France Sagot:
Orphan gene finding - an exon assembly approach. Theor. Comput. Sci. 290(3): 1407-1431 (2003) - [c4]Yvan Saeys, Sven Degroeve, Dirk Aeyels, Yves Van de Peer, Pierre Rouzé:
Fast feature selection using a simple estimation of distribution algorithm: a case study on splice site prediction. ECCB 2003: 179-188 - 2002
- [j6]Gert Thijs, Yves Moreau, Frank De Smet, Janick Mathys, Magali Lescot, Stephane Rombauts, Pierre Rouzé, Bart De Moor, Kathleen Marchal:
INCLUSive: INtegrated Clustering, Upstream sequence retrieval and motif Sampling. Bioinform. 18(2): 331-332 (2002) - [j5]Gert Thijs, Kathleen Marchal, Magali Lescot, Stephane Rombauts, Bart De Moor, Pierre Rouzé, Yves Moreau:
A Gibbs Sampling Method to Detect Overrepresented Motifs in the Upstream Regions of Coexpressed Genes. J. Comput. Biol. 9(2): 447-464 (2002) - [j4]Magali Lescot, Patrice Déhais, Gert Thijs, Kathleen Marchal, Yves Moreau, Yves Van de Peer, Pierre Rouzé, Stephane Rombauts:
PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Res. 30(1): 325-327 (2002) - [c3]Sven Degroeve, Bernard De Baets, Yves Van de Peer, Pierre Rouzé:
Feature subset selection for splice site prediction. ECCB 2002: 75-83 - 2001
- [j3]Gert Thijs, Magali Lescot, Kathleen Marchal, Stephane Rombauts, Bart De Moor, Pierre Rouzé, Yves Moreau:
A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling. Bioinform. 17(12): 1113-1122 (2001) - [c2]Gert Thijs, Kathleen Marchal, Magali Lescot, Stephane Rombauts, Bart De Moor, Pierre Rouzé, Yves Moreau:
A Gibbs sampling method to detect over-represented motifs in the upstream regions of co-expressed genes. RECOMB 2001: 305-312 - 2000
- [c1]Thomas Schiex, Annick Moisan, Pierre Rouzé:
EUGÈNE: An Eukaryotic Gene Finder That Combines Several Sources of Evidence. JOBIM 2000: 111-125
1990 – 1999
- 1999
- [j2]Nathalie Pavy, Stephane Rombauts, Patrice Déhais, Catherine Mathé, Ramana V. Davuluri, Philippe Leroy, Pierre Rouzé:
Evaluation of gene prediction software using a genomic data set: application to <$O_SSF>Arabidopsis thaliana<$C_SSF>sequences. Bioinform. 15(11): 887-899 (1999) - [j1]Stephane Rombauts, Patrice Déhais, Marc Van Montagu, Pierre Rouzé:
PlantCARE, a plant cis-acting regulatory element database. Nucleic Acids Res. 27(1): 295-296 (1999)
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