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ORCIDThomas Schiex
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- affiliation: INRA, Toulouse, France
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2020 – today
- 2024
[c46]Samuel Buchet, David Allouche, Simon de Givry, Thomas Schiex:
Bi-objective Discrete Graphical Model Optimization. CPAIOR (1) 2024: 136-152- 2023
- [c45]Thomas Schiex:
Coupling CP with Deep Learning for Molecular Design and SARS-CoV2 Variants Exploration (Invited Talk). CP 2023: 4:1-4:3 - [c44]Marianne Defresne, Sophie Barbe, Thomas Schiex:
Scalable Coupling of Deep Learning with Logical Reasoning. IJCAI 2023: 3615-3623 - [i11]Marianne Defresne, Sophie Barbe, Thomas Schiex:
Scalable Coupling of Deep Learning with Logical Reasoning. CoRR abs/2305.07617 (2023) - 2022
- [c43]Valentin Durante, George Katsirelos, Thomas Schiex:
Efficient Low Rank Convex Bounds for Pairwise Discrete Graphical Models. ICML 2022: 5726-5741 - [e2]Andrea Passerini, Thomas Schiex:
PAIS 2022 - 11th Conference on Prestigious Applications of Artificial Intelligence, 25 July 2022, Vienna, Austria (co-located with IJCAI-ECAI 2022). Frontiers in Artificial Intelligence and Applications 351, IOS Press 2022, ISBN 978-1-64368-294-5 [contents] - 2021
- [j41]Manon Ruffini, Jelena Vucinic
, Simon de Givry, George Katsirelos, Sophie Barbe, Thomas Schiex:
Guaranteed Diversity and Optimality in Cost Function Network Based Computational Protein Design Methods. Algorithms 14(6): 168 (2021) - [i10]Valentin Durante, George Katsirelos, Thomas Schiex:
Efficient semidefinite bounds for multi-label discrete graphical models. CoRR abs/2111.12491 (2021) - 2020
- [j40]Jelena Vucinic, David Simoncini, Manon Ruffini, Sophie Barbe, Thomas Schiex:
Positive multistate protein design. Bioinform. 36(1): 122-130 (2020) - [c42]Céline Brouard, Simon de Givry, Thomas Schiex:
Pushing Data into CP Models Using Graphical Model Learning and Solving. CP 2020: 811-827 - [c41]Martin C. Cooper, Simon de Givry, Thomas Schiex:
Graphical Models: Queries, Complexity, Algorithms (Tutorial). STACS 2020: 4:1-4:22 - [p2]Martin C. Cooper, Simon de Givry, Thomas Schiex:
Valued Constraint Satisfaction Problems. A Guided Tour of Artificial Intelligence Research (2) (II) 2020: 185-207
2010 – 2019
- 2019
- [j39]David Simoncini, Kam Y. J. Zhang, Thomas Schiex, Sophie Barbe:
A structural homology approach for computational protein design with flexible backbone. Bioinform. 35(14): 2418-2426 (2019) - [j38]Antoine Charpentier, David Mignon, Sophie Barbe, Juan Cortés, Thomas Schiex, Thomas Simonson, David Allouche:
Variable Neighborhood Search with Cost Function Networks To Solve Large Computational Protein Design Problems. J. Chem. Inf. Model. 59(1): 127-136 (2019) - [c40]Manon Ruffini, Jelena Vucinic, Simon de Givry, George Katsirelos, Sophie Barbe, Thomas Schiex:
Guaranteed Diversity & Quality for the Weighted CSP. ICTAI 2019: 18-25 - [e1]Thomas Schiex, Simon de Givry:
Principles and Practice of Constraint Programming - 25th International Conference, CP 2019, Stamford, CT, USA, September 30 - October 4, 2019, Proceedings. Lecture Notes in Computer Science 11802, Springer 2019, ISBN 978-3-030-30047-0 [contents] - 2018
- [j37]Clément Viricel, Simon de Givry, Thomas Schiex, Sophie Barbe:
Cost function network-based design of protein-protein interactions: predicting changes in binding affinity. Bioinform. 34(15): 2581-2589 (2018) - [c39]David Simoncini, Sophie Barbe, Thomas Schiex, Sébastien Vérel:
Fitness landscape analysis around the optimum in computational protein design. GECCO 2018: 355-362 - 2017
- [j36]Hiep Nguyen, Christian Bessiere, Simon de Givry, Thomas Schiex:
Triangle-based consistencies for cost function networks. Constraints An Int. J. 22(2): 230-264 (2017) - 2016
- [j35]David Allouche, Christian Bessiere, Patrice Boizumault, Simon de Givry, Patricia Gutierrez, Jimmy H. M. Lee, Ka Lun Leung, Samir Loudni, Jean-Philippe Métivier, Thomas Schiex, Yi Wu:
Tractability-preserving transformations of global cost functions. Artif. Intell. 238: 166-189 (2016) - [j34]Barry Hurley, Barry O'Sullivan, David Allouche, George Katsirelos, Thomas Schiex, Matthias Zytnicki, Simon de Givry:
Multi-language evaluation of exact solvers in graphical model discrete optimization. Constraints An Int. J. 21(3): 413-434 (2016) - [j33]Seydou Traoré, Kyle E. Roberts, David Allouche, Bruce Randall Donald, Isabelle André, Thomas Schiex, Sophie Barbe:
Fast search algorithms for computational protein design. J. Comput. Chem. 37(12): 1048-1058 (2016) - [c38]Clément Viricel, David Simoncini, Sophie Barbe, Thomas Schiex:
Guaranteed Weighted Counting for Affinity Computation: Beyond Determinism and Structure. CP 2016: 733-750 - 2015
- [j32]Thi Hong Hiep Nguyen, Thomas Schiex, Christian Bessiere:
Strong consistencies for weighted constraint satisfaction problems. Constraints An Int. J. 20(4): 471-472 (2015) - [c37]David Allouche, Simon de Givry, George Katsirelos, Thomas Schiex, Matthias Zytnicki:
Anytime Hybrid Best-First Search with Tree Decomposition for Weighted CSP. CP 2015: 12-29 - [c36]Clément Viricel, David Simoncini, David Allouche, Simon de Givry, Sophie Barbe, Thomas Schiex:
Approximate Counting with Deterministic Guarantees for Affinity Computation. MCO (2) 2015: 165-176 - [i9]David Allouche, Christian Bessiere, Patrice Boizumault, Simon de Givry, Patricia Gutierrez, Jimmy H. M. Lee, Ka Lun Leung, Samir Loudni, Jean-Philippe Métivier, Thomas Schiex, Yi Wu:
Tractability and Decompositions of Global Cost Functions. CoRR abs/1502.02414 (2015) - [i8]Nathalie Peyrard, Simon de Givry, Alain Franc, Stéphane Robin, Régis Sabbadin, Thomas Schiex, Matthieu Vignes:
Exact and approximate inference in graphical models: variable elimination and beyond. CoRR abs/1506.08544 (2015) - 2014
- [j31]David Allouche, Isabelle André, Sophie Barbe, Jessica Davies, Simon de Givry, George Katsirelos, Barry O'Sullivan, Steven D. Prestwich, Thomas Schiex, Seydou Traoré:
Computational protein design as an optimization problem. Artif. Intell. 212: 59-79 (2014) - [j30]Erika Sallet, Jérôme Gouzy, Thomas Schiex:
EuGene-PP: a next-generation automated annotation pipeline for prokaryotic genomes. Bioinform. 30(18): 2659-2661 (2014) - [c35]Hiep Nguyen, Simon de Givry, Thomas Schiex, Christian Bessiere:
Maintaining Virtual Arc Consistency Dynamically during Search. ICTAI 2014: 8-15 - [i7]Matthias Zytnicki, Christine Gaspin, Simon de Givry, Thomas Schiex:
Bounds Arc Consistency for Weighted CSPs. CoRR abs/1401.3481 (2014) - 2013
- [j29]Seydou Traoré, David Allouche, Isabelle André, Simon de Givry, George Katsirelos, Thomas Schiex, Sophie Barbe:
A new framework for computational protein design through cost function network optimization. Bioinform. 29(17): 2129-2136 (2013) - [c34]Hiep Nguyen, Thomas Schiex, Christian Bessiere:
Dynamic virtual arc consistency. SAC 2013: 98-103 - [i6]Hélène Fargier, Jérôme Lang, Roger Martin-Clouaire, Thomas Schiex:
A Constraint Satisfaction Approach to Decision under Uncertainty. CoRR abs/1302.4946 (2013) - [i5]Florence Dupin de Saint-Cyr, Jérôme Lang, Thomas Schiex:
Penalty logic and its Link with Dempster-Shafer Theory. CoRR abs/1302.6804 (2013) - [i4]Thomas Schiex:
Possibilistic Constraint Satisfaction Problems or "How to handle soft constraints?". CoRR abs/1303.5427 (2013) - 2012
- [j28]Eric Audemard, Thomas Schiex, Thomas Faraut:
Detecting long tandem duplications in genomic sequences. BMC Bioinform. 13: 83 (2012) - [c33]David Allouche, Christian Bessiere, Patrice Boizumault, Simon de Givry, Patricia Gutierrez, Samir Loudni, Jean-Philippe Métivier, Thomas Schiex:
Filtering Decomposable Global Cost Functions. AAAI 2012: 407-413 - [c32]David Allouche, Seydou Traoré, Isabelle André, Simon de Givry, George Katsirelos, Sophie Barbe, Thomas Schiex:
Computational Protein Design as a Cost Function Network Optimization Problem. CP 2012: 840-849 - [i3]Cédric Pralet, Thomas Schiex, Gérard Verfaillie:
From influence diagrams to multi-operator cluster DAGs. CoRR abs/1206.6844 (2012) - 2011
- [c31]Aurélie Favier, Simon de Givry, Andrés Legarra, Thomas Schiex:
Pairwise Decomposition for Combinatorial Optimization in Graphical Models. IJCAI 2011: 2126-2132 - [i2]Cédric Pralet, Thomas Schiex, Gérard Verfaillie:
An Algebraic Graphical Model for Decision with Uncertainties, Feasibilities, and Utilities. CoRR abs/1110.2741 (2011) - 2010
- [j27]Martin C. Cooper, Simon de Givry, Martí Sánchez-Fibla, Thomas Schiex, Matthias Zytnicki, Tomás Werner:
Soft arc consistency revisited. Artif. Intell. 174(7-8): 449-478 (2010) - [j26]Pedro Meseguer, Francesca Rossi, Thomas Schiex:
Introduction to the special issue on Constraint-based approaches to Preference Modelling and Reasoning. Constraints An Int. J. 15(4): 453-455 (2010) - [j25]Cédric Pralet, Gérard Verfaillie, Thomas Schiex:
Le cadre PFU, un modèle et des algorithmes génériques pour la décision séquentielle incluant incertitudes, faisabilités et utilités. Tech. Sci. Informatiques 29(1): 85-114 (2010) - [c30]David Allouche, Simon de Givry, Thomas Schiex:
Towards Parallel Non Serial Dynamic Programming for Solving Hard Weighted CSP. CP 2010: 53-60
2000 – 2009
- 2009
- [b1]Cédric Pralet, Thomas Schiex, Gérard Verfaillie:
Sequential Decision-Making Problems - Representation and Solution. Wiley 2009, ISBN 978-1-84821-174-2, pp. I-XVI, 1-325 - [j24]Jérôme Gouzy, Sébastien Carrère, Thomas Schiex:
FrameDP: sensitive peptide detection on noisy matured sequences. Bioinform. 25(5): 670-671 (2009) - [j23]Matthias Zytnicki, Christine Gaspin, Simon de Givry, Thomas Schiex:
Bounds Arc Consistency for Weighted CSPs. J. Artif. Intell. Res. 35: 593-621 (2009) - [c29]Martí Sánchez-Fibla, David Allouche, Simon de Givry, Thomas Schiex:
Russian Doll Search with Tree Decomposition. IJCAI 2009: 603-608 - [p1]Gérard Verfaillie, Thomas Schiex:
Constraint Satisfaction Problems. Decision-making Process 2009: 265-320 - 2008
- [j22]Céline Noirot, Christine Gaspin, Thomas Schiex, Jérôme Gouzy:
LeARN: a platform for detecting, clustering and annotating non-coding RNAs. BMC Bioinform. 9 (2008) - [j21]Matthias Zytnicki, Christine Gaspin, Thomas Schiex:
DARN! A Weighted Constraint Solver for RNA Motif Localization. Constraints An Int. J. 13(1-2): 91-109 (2008) - [j20]Martí Sánchez-Fibla, Simon de Givry, Thomas Schiex:
Mendelian Error Detection in Complex Pedigrees Using Weighted Constraint Satisfaction Techniques. Constraints An Int. J. 13(1-2): 130-154 (2008) - [j19]Federico Heras, Javier Larrosa, Simon de Givry, Thomas Schiex:
2006 and 2007 Max-SAT Evaluations: Contributed Instances. J. Satisf. Boolean Model. Comput. 4(2-4): 239-250 (2008) - [c28]Martin C. Cooper, Simon de Givry, Martí Sánchez-Fibla, Thomas Schiex, Matthias Zytnicki:
Virtual Arc Consistency for Weighted CSP. AAAI 2008: 253-258 - 2007
- [j18]Thomas Faraut, Simon de Givry, Patrick Chabrier, Thomas Derrien, Francis Galibert, Christophe Hitte, Thomas Schiex:
A comparative genome approach to marker ordering. Bioinform. 23(2): 50-56 (2007) - [j17]Cédric Pralet, Gérard Verfaillie, Thomas Schiex:
An Algebraic Graphical Model for Decision with Uncertainties, Feasibilities, and Utilities. J. Artif. Intell. Res. 29: 421-489 (2007) - [j16]Cédric Pralet, Cédric Verfaillie, Thomas Schiex:
Un cadre graphique et algébrique pour les problèmes de décision incluant incertitudes, faisabilités et utilités. Rev. d'Intelligence Artif. 21(3): 419-448 (2007) - [j15]Cédric Pralet, Thomas Schiex, Gérard Verfaillie:
Algorithmes et complexités génériques pour différents cadres de décision séquentielle dans l'incertain. Rev. d'Intelligence Artif. 21(4): 459-488 (2007) - [c27]Martí Sánchez-Fibla, Simon de Givry, Thomas Schiex:
Mendelian error detection in complex pedigrees using weighted constraint satisfaction techniques. CCIA 2007: 29-37 - [c26]Martin C. Cooper, Simon de Givry, Thomas Schiex:
Optimal Soft Arc Consistency. IJCAI 2007: 68-73 - 2006
- [j14]Patricia Thébault, Simon de Givry, Thomas Schiex, Christine Gaspin:
Searching RNA motifs and their intermolecular contacts with constraint networks. Bioinform. 22(17): 2074-2080 (2006) - [c25]Simon de Givry, Thomas Schiex, Gérard Verfaillie:
Exploiting Tree Decomposition and Soft Local Consistency In Weighted CSP. AAAI 2006: 22-27 - [c24]Cédric Pralet, Thomas Schiex, Gérard Verfaillie:
Decomposition of Multi-operator Queries on Semiring-Based Graphical Models. CP 2006: 437-452 - [c23]Cédric Pralet, Gérard Verfaillie, Thomas Schiex:
Decision with Uncertainties, Feasibilities, and Utilities: Towards a Unified Algebraic Framework. ECAI 2006: 427-431 - [c22]Matthias Zytnicki, Christine Gaspin, Thomas Schiex:
A new local consistency for weighted CSP dedicated to long domains. SAC 2006: 394-398 - [c21]Cédric Pralet, Thomas Schiex, Gérard Verfaillie:
From Influence Diagrams to Multi-operator Cluster DAGs. UAI 2006 - [r1]Pedro Meseguer, Francesca Rossi, Thomas Schiex:
Soft Constraints. Handbook of Constraint Programming 2006: 281-328 - 2005
- [j13]Simon de Givry, Martin Bouchez, Patrick Chabrier, Denis Milan, Thomas Schiex:
CARHTA GENE: multipopulation integrated genetic and radiation hybrid mapping. Bioinform. 21(8): 1703-1704 (2005) - [j12]Sylvain Foissac, Thomas Schiex:
Integrating alternative splicing detection into gene prediction. BMC Bioinform. 6: 25 (2005) - 2004
- [j11]Martin C. Cooper, Thomas Schiex:
Arc consistency for soft constraints. Artif. Intell. 154(1-2): 199-227 (2004) - [j10]Javier Larrosa, Thomas Schiex:
Solving weighted CSP by maintaining arc consistency. Artif. Intell. 159(1-2): 1-26 (2004) - 2003
- [j9]Thomas Schiex, Jérôme Gouzy, Annick Moisan, Yannick de Oliveira:
FrameD: a flexible program for quality check and gene prediction in prokaryotic genomes and noisy matured eukaryotic sequences. Nucleic Acids Res. 31(13): 3738-3741 (2003) - [j8]Sylvain Foissac, Philippe Bardou, Annick Moisan, Marie-Josée Cros, Thomas Schiex:
EUGÈNE'HOM: a generic similarity-based gene finder using multiple homologous sequences. Nucleic Acids Res. 31(13): 3742-3745 (2003) - [c20]Simon de Givry, Javier Larrosa, Pedro Meseguer, Thomas Schiex:
Solving Max-SAT as Weighted CSP. CP 2003: 363-376 - [c19]Javier Larrosa, Thomas Schiex:
In the quest of the best form of local consistency for Weighted CSP. IJCAI 2003: 239-244 - 2001
- [c18]Thomas Schiex, Patrick Chabrier, Martin Bouchez, Denis Milan:
Boosting EM for Radiation Hybrid and Genetic Mapping. WABI 2001: 41-51 - [i1]Martin C. Cooper, Thomas Schiex:
Arc consistency for soft constraints. CoRR cs.AI/0111038 (2001) - 2000
- [c17]Thomas Schiex:
Arc Consistency for Soft Constraints. CP 2000: 411-424 - [c16]Thomas Schiex, Annick Moisan, Pierre Rouzé:
EUGÈNE: An Eukaryotic Gene Finder That Combines Several Sources of Evidence. JOBIM 2000: 111-125
1990 – 1999
- 1999
- [j7]Javier Larrosa, Pedro Meseguer, Thomas Schiex:
Maintaining Reversible DAC for Max-CSP. Artif. Intell. 107(1): 149-163 (1999) - [j6]Bertrand Cabon, Simon de Givry, Lionel Lobjois, Thomas Schiex, Joost P. Warners:
Radio Link Frequency Assignment. Constraints An Int. J. 4(1): 79-89 (1999) - [j5]Stefano Bistarelli, Ugo Montanari, Francesca Rossi, Thomas Schiex, Gérard Verfaillie, Hélène Fargier:
Semiring-Based CSPs and Valued CSPs: Frameworks, Properties, and Comparison. Constraints An Int. J. 4(3): 199-240 (1999) - 1998
- [j4]Claudette Cayrol, Marie-Christine Lagasquie-Schiex, Thomas Schiex:
Nonmonotonic Reasoning: From Complexity to Algorithms. Ann. Math. Artif. Intell. 22(3-4): 207-236 (1998) - [j3]Claude Le Pape, James M. Crawford, Barry Fox, Thomas Schiex:
Introduction to a Benchmark Column in CONSTRAINTS. Constraints An Int. J. 3(2/3): 255-256 (1998) - [c15]Javier Larrosa, Pedro Meseguer, Thomas Schiex, Gérard Verfaillie:
Reversible DAC and Other Improvements for Solving Max-CSP. AAAI/IAAI 1998: 347-352 - 1997
- [c14]Christine Gaspin, Thomas Schiex:
Genetic Algorithms for Genetic Mapping. Artificial Evolution 1997: 145-156 - [c13]Simon de Givry, Gérard Verfaillie, Thomas Schiex:
Bounding the Optimum of Constraint Optimization Problems. CP 1997: 405-419 - [c12]Thomas Schiex, Christine Gaspin:
CARTHAGENE: Constructing and Joining Maximum Likelihood Genetic Maps. ISMB 1997: 258-267 - 1996
- [c11]Hélène Fargier, Jérôme Lang, Thomas Schiex:
Mixed Constraint Satisfaction: A Framework for Decision Problems under Incomplete Knowledge. AAAI/IAAI, Vol. 1 1996: 175-180 - [c10]Gérard Verfaillie, Michel Lemaître, Thomas Schiex:
Russian Doll Search for Solving Constraint Optimization Problems. AAAI/IAAI, Vol. 1 1996: 181-187 - [c9]Thomas Schiex, Jean-Charles Régin, Christine Gaspin, Gérard Verfaillie:
Lazy Arc Consistency. AAAI/IAAI, Vol. 1 1996: 216-221 - 1995
- [c8]Stefano Bistarelli, Hélène Fargier, Ugo Montanari, Francesca Rossi, Thomas Schiex, Gérard Verfaillie:
Semiring-Based CSPs and Valued CSPs: Basic Properties and Comparison. Over-Constrained Systems 1995: 111-150 - [c7]Thomas Schiex, Hélène Fargier, Gérard Verfaillie:
Valued Constraint Satisfaction Problems: Hard and Easy Problems. IJCAI (1) 1995: 631-639 - [c6]Hélène Fargier, Jérôme Lang, Roger Martin-Clouaire, Thomas Schiex:
A constraint satisfaction framework for decision under uncertainty. UAI 1995: 167-174 - 1994
- [j2]Thomas Schiex, Gérard Verfaillie:
Nogood Recording for Static and Dynamic Constraint Satisfaction Problems. Int. J. Artif. Intell. Tools 3(2): 187-208 (1994) - [c5]Gérard Verfaillie, Thomas Schiex:
Solution Reuse in Dynamic Constraint Satisfaction Problems. AAAI 1994: 307-312 - [c4]Thomas Schiex, Gérard Verfaillie:
Stubborness: A Possible Enhancement for Backjumping and Nogood Recording. ECAI 1994: 165-172 - [c3]Florence Dupin de Saint-Cyr, Jérôme Lang, Thomas Schiex:
Penalty Logic and its Link with Dempster-Shafer Theory. UAI 1994: 204-211 - 1993
- [j1]Michel Cayrol, Olivier Palmade, Thomas Schiex:
A Fixed Point Semantics for the ATMS. J. Log. Comput. 3(2): 115-130 (1993) - [c2]Thomas Schiex, Gérard Verfaillie:
Nogood Recording for Static and Dynamic Constraint Satisfaction Problems. ICTAI 1993: 48-55 - 1992
- [c1]Thomas Schiex:
Possibilistic Constraint Satisfaction Problems or "How to Handle Soft Constraints?". UAI 1992: 268-275
Coauthor Index
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