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2010 – 2019
- 2016
[j9]Federico Mattiello, Bie M. P. Verbist, Karoline Faust
, Jeroen Raes, William D. Shannon, Luc Bijnens, Olivier Thas:
A web application for sample size and power calculation in case-control microbiome studies. Bioinform. 32(13): 2038-2040 (2016)- [j8]Mohamed Mysara, Natalie Leys, Jeroen Raes, Pieter Monsieurs:
IPED: a highly efficient denoising tool for Illumina MiSeq Paired-end 16S rRNA gene amplicon sequencing data. BMC Bioinform. 17: 192 (2016) - [i1]Karoline Faust, Jeroen Raes:
CoNet app: inference of biological association networks using Cytoscape. F1000Research 5: 1519 (2016) - 2015
- [j7]Mohamed Mysara, Natalie Leys, Jeroen Raes, Pieter Monsieurs:
NoDe: a fast error-correction algorithm for pyrosequencing amplicon reads. BMC Bioinform. 16: 88:1-88:10 (2015) - [j6]Kristoffer Forslund, Falk Hildebrand, Trine Nielsen, Gwen Falony, Emmanuelle Le Chatelier, Shinichi Sunagawa, Edi Prifti, Sara Vieira-Silva, Valborg Gudmundsdottir, Helle Krogh Pedersen, Manimozhiyan Arumugam, Karsten Kristiansen, Anita Yvonne Voigt, Henrik Vestergaard, Rajna Hercog, Paul I. Costea, Jens Roat Kultima, Junhua Li, Torben Jørgensen, Florence Levenez, Joël Dore, Henrik Bjørn Nielsen, Søren Brunak, Jeroen Raes, Torben Hansen, Jun Wang, S. Dusko Ehrlich, Peer Bork, Oluf Pedersen:
Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota. Nat. 528(7582): 262-266 (2015) - 2014
- [j5]Manimozhiyan Arumugam, Jeroen Raes, Eric Pelletier, Denis Le Paslier, Takuji Yamada, Daniel R. Mende, Gabriel R. Fernandes, Julien Tap, Thomas Brüls, Jean-Michel Batto, Marcelo Bertalan, Natalia Borruel, Francesc Casellas, Leyden Fernández, Laurent Gautier, Torben Hansen, Masahira Hattori, Tetsuya Hayashi, Michiel Kleerebezem, Ken Kurokawa, Marion Leclerc, Florence Levenez, Chaysavanh Manichanh, Henrik Bjørn Nielsen, Trine Nielsen, Nicolas Pons, Julie Poulain, Junjie Qin, Thomas Sicheritz-Pontén, Sebastian Tims, David Torrents, Edgardo Ugarte, Erwin G. Zoetendal, Jun Wang, Francisco Guarner, Oluf Pedersen, Willem M. de Vos, Søren Brunak, Joël Dore, MetaHIT consortium, Jean Weissenbach, S. Dusko Ehrlich, Peer Bork:
Addendum: Enterotypes of the human gut microbiome. Nat. 506(7489): 516 (2014) - 2012
- [j4]Karoline Faust, Jarupon Fah Sathirapongsasuti, Jacques Izard, Nicola Segata, Dirk Gevers, Jeroen Raes, Curtis Huttenhower:
Microbial Co-occurrence Relationships in the Human Microbiome. PLoS Comput. Biol. 8(7) (2012) - 2010
- [j3]Manimozhiyan Arumugam, Eoghan D. Harrington, Konrad U. Foerstner, Jeroen Raes, Peer Bork:
SmashCommunity: a metagenomic annotation and analysis tool. Bioinform. 26(23): 2977-2978 (2010) - [j2]Eoghan D. Harrington, Manimozhiyan Arumugam, Jeroen Raes, Peer Bork, David A. Relman:
SmashCell: a software framework for the analysis of single-cell amplified genome sequences. Bioinform. 26(23): 2979-2980 (2010)
2000 – 2009
- 2005
- [j1]Sébastien Aubourg, Véronique Brunaud, Clémence Bruyère, J. Mark Cock, Richard Cooke, Annick Cottet, Arnaud Couloux, Patrice Déhais, Gilbert Deléage, Aymeric Duclert, Manuel Echeverria, Aimée Eschbach, Denis Falconet, Ghislain Filippi, Christine Gaspin, Christophe Geourjon, Jean-Michel Grienenberger, Guy Houlné, Elisabeth Jamet, Frédéric Lechauve, Olivier Leleu, Philippe Leroy, Régis Mache, Christian Meyer, Hafed Nedjari, Ioan Negrutiu, Valérie Orsini, Eric Peyretaillade, Cyril Pommier, Jeroen Raes, Jean-Loup Risler, Stéphane Rivière, Stephane Rombauts, Pierre Rouzé, Michel Schneider, Philippe Schwob, Ian Small, Ghislain Soumayet-Kampetenga, Darko Stankovski, Claire Toffano, Michael Tognolli, Michel Caboche, Alain Lecharny:
GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts. Nucleic Acids Res. 33(Database-Issue): 641-646 (2005)
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