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ORCIDVasilis Z. Marmarelis
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- affiliation: University of Southern California, Los Angeles, USA
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2020 – today
- 2024
[j52]Brent M. Roeder, Xiwei She
, Alexander S. Dakos, Bryan Moore, Robert T. Wicks, Mark R. Witcher, Daniel E. Couture, Adrian W. Laxton, Heidi M. Munger Clary, Gautam Popli, Charles Liu, Brian Lee, Christianne Heck, George Nune, Hui Gong, Susan Shaw, Vasilis Z. Marmarelis, Theodore W. Berger, Sam A. Deadwyler, Dong Song, Robert E. Hampson:
Developing a hippocampal neural prosthetic to facilitate human memory encoding and recall of stimulus features and categories. Frontiers Comput. Neurosci. 18 (2024)- 2021
- [j51]Vasilis Z. Marmarelis, Dae C. Shin, Rong Zhang:
Closed-Loop Dynamic Modeling of the Heart-Rate Reflex to Concurrent Spontaneous Changes of Arterial Blood Pressure and CO2 Tension: Quantification of the Effects of Mild Cognitive Impairment. IEEE Trans. Biomed. Eng. 68(11): 3347-3355 (2021)
2010 – 2019
- 2019
- [j50]Kunling Geng, Dae C. Shin, Dong Song, Robert E. Hampson, Samuel A. Deadwyler, Theodore W. Berger, Vasilis Z. Marmarelis:
Multi-Input, Multi-Output Neuronal Mode Network Approach to Modeling the Encoding Dynamics and Functional Connectivity of Neural Systems. Neural Comput. 31(7): 1327-1355 (2019) - [c25]Vasilis Z. Marmarelis, Dae C. Shin, Rong Zhang:
Closed-loop modeling of the heart-rate reflex for improved diagnosis and monitoring of Mild Cognitive Impairment. EMBC 2019: 1879-1882 - 2018
- [j49]Kunling Geng, Dae C. Shin, Dong Song, Robert E. Hampson, Sam A. Deadwyler, Theodore W. Berger, Vasilis Z. Marmarelis:
Mechanism-Based and Input-Output Modeling of the Key Neuronal Connections and Signal Transformations in the CA3-CA1 Regions of the Hippocampus. Neural Comput. 30(1) (2018) - [j48]Roman A. Sandler, Kunling Geng, Dong Song, Robert E. Hampson, Mark R. Witcher, Sam A. Deadwyler, Theodore W. Berger, Vasilis Z. Marmarelis:
Designing Patient-Specific Optimal Neurostimulation Patterns for Seizure Suppression. Neural Comput. 30(5) (2018) - 2017
- [j47]William W. Lytton, Jeff Arle, Georgiy V. Bobashev, Songbai Ji, Tara L. Klassen, Vasilis Z. Marmarelis, James S. Schwaber, Mohamed A. Sherif, Terence D. Sanger:
Multiscale modeling in the clinic: diseases of the brain and nervous system. Brain Informatics 4(4): 219-230 (2017) - [j46]Marc Cole, Steffen E. Eikenberry, Takahide Kato, Roman A. Sandler, Stanley M. Yamashiro, Vasilis Z. Marmarelis:
Nonparametric Model of Smooth Muscle Force Production During Electrical Stimulation. J. Comput. Biol. 24(3): 229-237 (2017) - [j45]Roman A. Sandler, Dustin Fetterhoff, Robert E. Hampson, Sam A. Deadwyler, Vasilis Z. Marmarelis:
Cannabinoids disrupt memory encoding by functionally isolating hippocampal CA1 from CA3. PLoS Comput. Biol. 13(7) (2017) - [j44]Brandon C. Henley, Dae C. Shin, Rong Zhang, Vasilis Z. Marmarelis:
Compartmental and Data-Based Modeling of Cerebral Hemodynamics: Nonlinear Analysis. IEEE Trans. Biomed. Eng. 64(5): 1078-1088 (2017) - [j43]Kunling Geng, Vasilis Z. Marmarelis:
Methodology of Recurrent Laguerre-Volterra Network for Modeling Nonlinear Dynamic Systems. IEEE Trans. Neural Networks Learn. Syst. 28(9): 2196-2208 (2017) - 2016
- [j42]Alexandros C. Charalampidis, Konstantinos Pontikis, Georgios D. Mitsis, George Dimitriadis, Vaia Lampadiari, Vasilis Z. Marmarelis, Apostolos Armaganidis, George P. Papavassilopoulos:
Calibration of a microdialysis sensor and recursive glucose level estimation in ICU patients using Kalman and particle filtering. Biomed. Signal Process. Control. 27: 155-163 (2016) - [c24]Dong Song, Robert E. Hampson, Brian S. Robinson, Vasilis Z. Marmarelis, Sam A. Deadwyler, Theodore W. Berger:
Decoding memory features from hippocampal spiking activities using sparse classification models. EMBC 2016: 1620-1623 - 2015
- [j41]Brandon C. Henley, Dae C. Shin, Rong Zhang, Vasilis Z. Marmarelis:
Compartmental and Data-Based Modeling of Cerebral Hemodynamics: Linear Analysis. IEEE Access 3: 2317-2332 (2015) - [j40]Steffen E. Eikenberry, Vasilis Z. Marmarelis:
Principal Dynamic Mode Analysis of the Hodgkin-Huxley Equations. Int. J. Neural Syst. 25(2): 1550001:1-1550001:23 (2015) - [j39]Roman A. Sandler, Dong Song, Robert E. Hampson, Sam A. Deadwyler, Theodore W. Berger, Vasilis Z. Marmarelis:
Model-based asessment of an in-vivo predictive relationship from CA1 to CA3 in the rodent hippocampus. J. Comput. Neurosci. 38(1): 89-103 (2015) - [c23]Dong Song, Brian S. Robinson, Robert E. Hampson, Vasilis Z. Marmarelis, Sam A. Deadwyler, Theodore W. Berger:
Sparse generalized volterra model of human hippocampal spike train transformation for memory prostheses. EMBC 2015: 3961-3964 - [c22]Dong Song, Robert E. Hampson, Brian S. Robinson, Ioan Opris, Vasilis Z. Marmarelis, Sam A. Deadwyler, Theodore W. Berger:
Nonlinear dynamical modeling of human hippocampal CA3-CA1 functional connectivity for memory prostheses. NER 2015: 316-319 - 2014
- [j38]Vasilis Z. Marmarelis, Dae C. Shin, Dong Song, Robert E. Hampson, Sam A. Deadwyler, Theodore W. Berger:
On parsing the neural code in the prefrontal cortex of primates using principal dynamic modes. J. Comput. Neurosci. 36(3): 321-337 (2014) - [j37]Vasilis Z. Marmarelis, Dae C. Shin, Melissa Orme, Rong Zhang:
Time-Varying Modeling of Cerebral Hemodynamics. IEEE Trans. Biomed. Eng. 61(3): 694-704 (2014) - 2013
- [j36]Vasilis Z. Marmarelis, Dae C. Shin, Dong Song, Robert E. Hampson, Sam A. Deadwyler, Theodore W. Berger:
Nonlinear modeling of dynamic interactions within neuronal ensembles using Principal Dynamic Modes. J. Comput. Neurosci. 34(1): 73-87 (2013) - [j35]Steffen E. Eikenberry, Vasilis Z. Marmarelis:
A nonlinear autoregressive Volterra model of the Hodgkin-Huxley equations. J. Comput. Neurosci. 34(1): 163-183 (2013) - [j34]Dong Song, Haonan Wang, Catherine Y. Tu, Vasilis Z. Marmarelis, Robert E. Hampson, Sam A. Deadwyler, Theodore W. Berger:
Identification of sparse neural functional connectivity using penalized likelihood estimation and basis functions. J. Comput. Neurosci. 35(3): 335-357 (2013) - [c21]Robert E. Hampson, Joshua L. Fuqua, Peter F. Huettl, Ioan Opris, Dong Song, Dae C. Shin, Vasilis Z. Marmarelis, Theodore W. Berger, Greg A. Gerhardt, Sam A. Deadwyler:
Conformal ceramic electrodes that record glutamate release and corresponding neural activity in primate prefrontal cortex. EMBC 2013: 5954-5957 - 2012
- [c20]Viviane S. Ghaderi, Shane M. Roach, Dong Song, Vasilis Z. Marmarelis, John Choma Jr., Theodore W. Berger:
Analog low-power hardware implementation of a Laguerre-Volterra model of intracellular subthreshold neuronal activity. EMBC 2012: 767-770 - [c19]Dong Song, Ioan Opris, Rosa H. M. Chan, Vasilis Z. Marmarelis, Robert E. Hampson, Sam A. Deadwyler, Theodore W. Berger:
Functional connectivity between Layer 2/3 and Layer 5 neurons in prefrontal cortex of nonhuman primates during a delayed match-to-sample task. EMBC 2012: 2555-2558 - 2011
- [j33]Alejandro F. Frangi, Jean-Louis Coatrieux, Grace C. Y. Peng, David Z. D'Argenio, Vasilis Z. Marmarelis, Anushka Michailova:
Editorial: Special Issue on Multiscale Modeling and Analysis in Computational Biology and Medicine - Part-1. IEEE Trans. Biomed. Eng. 58(10): 2936-2942 (2011) - [j32]Jean-Louis Coatrieux, Alejandro F. Frangi, Grace C. Y. Peng, David Z. D'Argenio, Vasilis Z. Marmarelis, Anushka Michailova:
Editorial: TBME Letters Special Issue on Multiscale Modeling and Analysis in Computational Biology and Medicine - Part-2. IEEE Trans. Biomed. Eng. 58(12): 3434-3439 (2011) - [c18]Dong Song, Rosa H. M. Chan, Vasilis Z. Marmarelis, Robert E. Hampson, Sam A. Deadwyler, Theodore W. Berger:
Estimation and statistical validation of event-invariant nonlinear dynamic models of hippocampal CA3-CA1 population activities. EMBC 2011: 3330-3333 - [c17]Vasilis Z. Marmarelis, Dae C. Shin, Dong Song, Robert E. Hampson, Sam A. Deadwyler, Theodore W. Berger:
Dynamic nonlinear modeling of interactions between neuronal ensembles using principal dynamic modes. EMBC 2011: 3334-3337 - [c16]Robert E. Hampson, Vasilis Z. Marmarelis, Dae C. Shin, Greg A. Gerhardt, Dong Song, Rosa H. M. Chan, A. J. Sweatt, John J. Granacki, Theodore W. Berger, Sam A. Deadwyler:
Restorative encoding memory integrative neural device: "REMIND". EMBC 2011: 3338-3341 - [c15]Vasilis Z. Marmarelis, Dae C. Shin, Ramon Diaz-Arrastia, R. Zhang:
Diagnostic biomarkers for Alzheimer's disease using dynamic nonlinear models based on principal dynamic modes. EMBC 2011: 7119-7122 - 2010
- [j31]Theodore W. Berger, Dong Song, Rosa H. M. Chan, Vasilis Z. Marmarelis:
The Neurobiological Basis of Cognition: Identification by Multi-Input, Multioutput Nonlinear Dynamic Modeling. Proc. IEEE 98(3): 356-374 (2010)
2000 – 2009
- 2009
- [j30]Jeong-Won Jeong, Dae C. Shin, Vasilis Z. Marmarelis:
Image fusion methodology for efficient interpretation of multiband images in 3D high-resolution ultrasonic transmission tomography. Int. J. Imaging Syst. Technol. 19(4): 277-282 (2009) - [j29]Dong Song, Vasilis Z. Marmarelis, Theodore W. Berger:
Parametric and non-parametric modeling of short-term synaptic plasticity. Part I: computational study. J. Comput. Neurosci. 26(1): 1-19 (2009) - [j28]Dong Song, Zhuo Wang, Vasilis Z. Marmarelis, Theodore W. Berger:
Parametric and non-parametric modeling of short-term synaptic plasticity. Part II: Experimental study. J. Comput. Neurosci. 26(1): 21-37 (2009) - [j27]Dong Song, Rosa H. M. Chan, Vasilis Z. Marmarelis, Robert E. Hampson, Sam A. Deadwyler, Theodore W. Berger:
Nonlinear modeling of neural population dynamics for hippocampal prostheses. Neural Networks 22(9): 1340-1351 (2009) - [j26]Georgios D. Mitsis, Mihalis G. Markakis, Vasilis Z. Marmarelis:
Nonlinear Modeling of the Dynamic Effects of Infused Insulin on Glucose: Comparison of Compartmental With Volterra Models. IEEE Trans. Biomed. Eng. 56(10): 2347-2358 (2009) - [c14]Theodore W. Berger, Dong Song, Vasilis Z. Marmarelis:
Multi-Input, Multi-Output Nonlinear Dynamic Modeling to Identify Biologically-Based Transformations as the "Cognitive Processes" Represented by the Ensemble Coding of Neuron Populations. AAAI Fall Symposium: Biologically Inspired Cognitive Architectures 2009 - 2008
- [j25]Angelika Dimoka, Spiros H. Courellis, Ghassan I. Gholmieh, Vasilis Z. Marmarelis, Theodore W. Berger:
Modeling the Nonlinear Properties of the in vitro Hippocampal Perforant Path-Dentate System Using Multielectrode Array Technology. IEEE Trans. Biomed. Eng. 55(2): 693-702 (2008) - 2007
- [j24]Georgios D. Mitsis, Andrew S. French, Ulli Höger, Spiros H. Courellis, Vasilis Z. Marmarelis:
Principal dynamic mode analysis of action potential firing in a spider mechanoreceptor. Biol. Cybern. 96(1): 113-127 (2007) - [j23]Dong Song, Rosa H. M. Chan, Vasilis Z. Marmarelis, Robert E. Hampson, Sam A. Deadwyler, Theodore W. Berger:
Nonlinear Dynamic Modeling of Spike Train Transformations for Hippocampal-Cortical Prostheses. IEEE Trans. Biomed. Eng. 54(6): 1053-1066 (2007) - 2006
- [j22]Jeong-Won Jeong, Dae C. Shin, Synho Do, Vasilis Z. Marmarelis:
Segmentation methodology for automated classification and differentiation of soft tissues in multiband images of high-resolution ultrasonic transmission tomography. IEEE Trans. Medical Imaging 25(8): 1068-1078 (2006) - [c13]Vasilis Z. Marmarelis, Theodoros P. Zanos, Spiros H. Courellis, Theodore W. Berger:
Boolean Modeling of Neural Systems with Point-Process Inputs and Outputs. EMBC 2006: 2114-2117 - [c12]Spiros H. Courellis, Theodoros P. Zanos, Min-Chi Hsiao, Robert E. Hampson, Sam A. Deadwyler, Vasilis Z. Marmarelis, Theodore W. Berger:
Modeling Hippocampal Nonlinear Dynamic Transformations with Principal Dynamic Modes. EMBC 2006: 2300-2303 - [c11]Min-Chi Hsiao, Chiu-Hsien Chan, Vijay Srinivasan, Ashish Ahuja, Gopal Erinjippurath, Theodoros P. Zanos, Ghassan I. Gholmieh, Dong Song, Jack Wills, Jeff LaCoss, Spiros H. Courellis, Armand R. Tanguay, John J. Granacki, Vasilis Z. Marmarelis, Theodore W. Berger:
VLSI Implementation of a Nonlinear Neuronal Model: A "Neural Prosthesis" to Restore Hippocampal Trisynaptic Dynamics. EMBC 2006: 4396-4399 - [c10]Theodoros P. Zanos, Spiros H. Courellis, Robert E. Hampson, Sam A. Deadwyler, Vasilis Z. Marmarelis, Theodore W. Berger:
A multi-input modeling approach to quantify hippocampal nonlinear dynamic transformations. EMBC 2006: 4967-4970 - [c9]Angelika Dimoka, Spiros H. Courellis, Vasilis Z. Marmarelis, Theodore W. Berger:
Modeling the Nonlinear Dynamic Interactions of the Lateral and the Medial Perforant Path of the Hippocampal Dentate Gyrus. EMBC 2006: 5539-5542 - [c8]Xiaping Xie, Dong Song, Zhuo Wang, Vasilis Z. Marmarelis, Theodore W. Berger:
Interaction of Short-Term Neuronal Plasticity and Synaptic Plasticity Revealed by Nonlinear Systems Analysis in Dentate Granule Cells. EMBC 2006: 5543-5546 - [c7]Dong Song, Rosa H. M. Chan, Vasilis Z. Marmarelis, Robert E. Hampson, Sam A. Deadwyler, Theodore W. Berger:
Physiologically Plausible Stochastic Nonlinear Kernel Models of Spike Train to Spike Train Transformation. EMBC 2006: 6129-6132 - 2005
- [j21]Ghassan I. Gholmieh, Spiros H. Courellis, Vasilis Z. Marmarelis, Theodore W. Berger:
Detecting CA1 short-term plasticity variations associated with changes in stimulus intensity and extracellular medium composition. Neurocomputing 63: 465-481 (2005) - [j20]Jeong-Won Jeong, Tae-Seong Kim, Dae C. Shin, Synho Do, Manbir Singh, Vasilis Z. Marmarelis:
Soft tissue differentiation using multiband signatures of high resolution ultrasonic transmission tomography. IEEE Trans. Medical Imaging 24(3): 399-408 (2005) - [c6]Theodore W. Berger, John J. Granacki, Vasilis Z. Marmarelis, Armand R. Tanguay Jr., Sam A. Deadwyler, Greg A. Gerhardt:
Implantable biomimetic electronics as neural prostheses for lost cognitive function. IJCNN 2005: 3109-3114 - 2004
- [j19]Georgios D. Mitsis, Marc J. Poulin, Peter A. Robbins, Vasilis Z. Marmarelis:
Nonlinear modeling of the dynamic effects of arterial pressure and CO2 variations on cerebral blood flow in healthy humans. IEEE Trans. Biomed. Eng. 51(11): 1932-1943 (2004) - [c5]Spiros H. Courellis, Ghassan I. Gholmieh, Vasilis Z. Marmarelis, Theodore W. Berger:
Modeling nonlinear neural dynamics with Volterra-Poisson kernels. IJCNN 2004: 3219-3222 - [c4]Synho Do, Vasilis Z. Marmarelis, Dae C. Shin, Jeong-Won Jeong, Tae-Seong Kim:
Volterra-Type Nonlinear Image Restoration of Medical Imagery Using Principal Dynamic Modes. ISBI 2004: 760-763 - [c3]Jeong-Won Jeong, Dae C. Shin, Tae-Seong Kim, Chengzheng Huang, Synho Do, Manbir Singh, Vasilis Z. Marmarelis:
3-D High Resolution Images of Ultrasonic Transmission Tomography Compared To Magnetic Resonance And Optical Images. ISBI 2004: 968-971 - 2001
- [j18]Theodore W. Berger, Michel Baudry, Roberta Diaz Brinton, Jim-Shih Liaw, Vasilis Z. Marmarelis, Alex Yoondong Park, Bing J. Sheu, Armand R. Tanguay:
Brain-implantable biomimetic electronics as the next era in neural prosthetics. Proc. IEEE 89(7): 993-1012 (2001) - 2000
- [j17]Konstantinos Alataris, Theodore W. Berger, Vasilis Z. Marmarelis:
A novel network for nonlinear modeling of neural systems with arbitrary point-process inputs. Neural Networks 13(2): 255-266 (2000) - [j16]Ramez E. N. Shehada, Vasilis Z. Marmarelis, Hebah N. Mansour, Warren S. Grundfest:
Laser induced fluorescence attenuation spectroscopy: detection of hypoxia. IEEE Trans. Biomed. Eng. 47(3): 301-312 (2000)
1990 – 1999
- 1999
- [j15]Martin T. Chian, Vasilis Z. Marmarelis, Theodore W. Berger:
Decomposition of neural systems with nonlinear feedback using stimulus-response data. Neurocomputing 26-27: 641-654 (1999) - [j14]M. Iatrou, Theodore W. Berger, Vasilis Z. Marmarelis:
Modeling of nonlinear nonstationary dynamic systems with a novel class of artificial neural networks. IEEE Trans. Neural Networks 10(2): 327-339 (1999) - 1998
- [j13]Ki H. Chon, Yu-Ming Chen, Niels-Henrik Holstein-Rathlou, Vasilis Z. Marmarelis:
Nonlinear system analysis of renal autoregulation in normotensive and hypertensive rats. IEEE Trans. Biomed. Eng. 45(3): 342-353 (1998) - [j12]Ki H. Chon, Niels-Henrik Holstein-Rathlou, Donald J. Marsh, Vasilis Z. Marmarelis:
Comparative nonlinear modeling of renal autoregulation in rats: Volterra approach versus artificial neural networks. IEEE Trans. Neural Networks 9(3): 430-435 (1998) - 1997
- [j11]Xiao Zhao, Vasilis Z. Marmarelis:
On the relation between continuous and discrete nonlinear parametric models. Autom. 33(1): 81-84 (1997) - [j10]Vasilis Z. Marmarelis, Xiao Zhao:
Volterra models and three-layer perceptrons. IEEE Trans. Neural Networks 8(6): 1421-1433 (1997) - 1995
- [j9]Andrew S. French, Vasilis Z. Marmarelis:
Nonlinear neuronal mode analysis of action potential encoding in the cockroach tactile spine neuron. Biol. Cybern. 73(5): 425-430 (1995) - 1994
- [c2]Xiao Zhao, Vasilis Z. Marmarelis:
Kernel invariance method for relating continuous-time with discrete-time nonlinear parametric models. ICASSP (3) 1994: 533-536 - 1993
- [j8]Ki Y. Chon, Yu-Ming Chen, Niels-Henrik Holstein-Rathlou, Donald J. Marsh, Vasilis Z. Marmarelis:
On the efficacy of linear system analysis of renal autoregulation in rats. IEEE Trans. Biomed. Eng. 40(1): 8-20 (1993) - [j7]Vasilis Z. Marmarelis, Melissa Orme:
Modeling of neural systems by use of neuronal modes. IEEE Trans. Biomed. Eng. 40(11): 1149-1158 (1993) - 1990
- [c1]Spiros H. Courellis, Vasilis Z. Marmarelis:
An artificial neural network for motion detection and speed estimation. IJCNN 1990: 407-421
1980 – 1989
- 1989
- [j6]Vasilis Z. Marmarelis:
Signal transformation and coding in neural systems. IEEE Trans. Biomed. Eng. 36(1): 15-24 (1989) - 1988
- [j5]A. D. Sams, Vasilis Z. Marmarelis:
Identification of linear periodically time-varying systems using white-noise test inputs. Autom. 24(4): 563-567 (1988) - [j4]Aiman Abdel-Malek, Vasilis Z. Marmarelis:
Modeling of task-dependent characteristics of human operator dynamics pursuit manual tracking. IEEE Trans. Syst. Man Cybern. 18(1): 163-172 (1988) - 1983
- [j3]Vasilis Z. Marmarelis:
Practical estimation of correlation functions of nonstationary Gaussian processes. IEEE Trans. Inf. Theory 29(6): 937-938 (1983) - [j2]John C. Curlander, Vasilis Z. Marmarelis:
Processing of visual information in the distal neurons of the vertebrate retina. IEEE Trans. Syst. Man Cybern. 13(5): 934-943 (1983)
1970 – 1979
- 1979
- [j1]Vasilis Z. Marmarelis:
Error analysis and optimal estimation procedures in identification of nonlinear volterra systems. Autom. 15(2): 161-174 (1979)
Coauthor Index
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