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2020 – today
- 2022
[j18]Ilya Plyusnin, Liisa Holm, Petri Törönen:
Correction: Novel comparison of evaluation metrics for gene ontology classifiers reveals drastic performance differences. PLoS Comput. Biol. 18(6) (2022)- 2021
- [i1]Henri Tiittanen, Liisa Holm, Petri Törönen:
A New Approach to Multilabel Stratified Cross Validation with Application to Large and Sparse Gene Ontology Datasets. CoRR abs/2109.01425 (2021)
2010 – 2019
- 2019
- [j17]Ilya Plyusnin
, Liisa Holm, Petri Törönen:
Novel comparison of evaluation metrics for gene ontology classifiers reveals drastic performance differences. PLoS Comput. Biol. 15(11) (2019) - 2018
- [j16]Alan Medlar, Petri Törönen, Liisa Holm:
AAI-profiler: fast proteome-wide exploratory analysis reveals taxonomic identity, misclassification and contamination. Nucleic Acids Res. 46(Webserver-Issue): W479-W485 (2018) - [j15]Petri Törönen, Alan Medlar, Liisa Holm:
PANNZER2: a rapid functional annotation web server. Nucleic Acids Res. 46(Webserver-Issue): W84-W88 (2018) - 2016
- [j14]Pashupati P. Mishra, Alan Medlar, Liisa Holm, Petri Törönen:
Robust multi-group gene set analysis with few replicates. BMC Bioinform. 17: 526:1-526:12 (2016) - 2015
- [j13]Patrik Koskinen, Petri Törönen, Jussi Nokso-Koivisto, Liisa Holm:
PANNZER: high-throughput functional annotation of uncharacterized proteins in an error-prone environment. Bioinform. 31(10): 1544-1552 (2015) - 2014
- [j12]Pashupati P. Mishra, Petri Törönen, Yrjö Leino, Liisa Holm:
Gene set analysis: limitations in popular existing methods and proposed improvements. Bioinform. 30(19): 2747-2756 (2014) - 2013
- [j11]Ajay Kumar, Liisa Holm, Petri Törönen:
GOParGenPy: a high throughput method to generate Gene Ontology data matrices. BMC Bioinform. 14: 242 (2013) - 2010
- [j10]Petri Pehkonen, Garry Wong, Petri Törönen:
Heuristic Bayesian Segmentation for Discovery of Coexpressed Genes within Genomic Regions. IEEE ACM Trans. Comput. Biol. Bioinform. 7(1): 37-49 (2010)
2000 – 2009
- 2009
- [j9]Petri Törönen, Pauli J. Ojala, Pekka Marttinen, Liisa Holm:
Robust extraction of functional signals from gene set analysis using a generalized threshold free scoring function. BMC Bioinform. 10: 307 (2009) - [j8]Petri Törönen, Petri Pehkonen, Liisa Holm:
Generation of Gene Ontology benchmark datasets with various types of positive signal. BMC Bioinform. 10: 319 (2009) - [j7]Martti Tolvanen, Pauli J. Ojala, Petri Törönen, Heidi Anderson, Jukka Partanen, Hannu Turpeinen:
Interspliced transcription chimeras: Neglected pathological mechanism infiltrating gene accession queries? J. Biomed. Informatics 42(2): 382-389 (2009) - 2006
- [j6]Pekka Marttinen, Jukka Corander, Petri Törönen, Liisa Holm:
Bayesian search of functionally divergent protein subgroups and their function specific residues. Bioinform. 22(20): 2466-2474 (2006) - [j5]Matti Kankainen, Petri Pehkonen, Päivi Rosenström, Petri Törönen, Garry Wong, Liisa Holm:
POXO: a web-enabled tool series to discover transcription factor binding sites. Nucleic Acids Res. 34(Web-Server-Issue): 534-540 (2006) - 2005
- [j4]Petri Pehkonen, Garry Wong, Petri Törönen:
Theme discovery from gene lists for identification and viewing of multiple functional groups. BMC Bioinform. 6: 162 (2005) - 2004
- [j3]Petri Törönen:
Selection of informative clusters from hierarchical cluster tree with gene classes. BMC Bioinform. 5: 32 (2004) - 2003
- [j2]Samuel Kaski, Janne Nikkilä, Merja Oja, Jarkko Venna, Petri Törönen, Eero Castrén:
Trustworthiness and metrics in visualizing similarity of gene expression. BMC Bioinform. 4: 48 (2003) - 2002
- [j1]Janne Nikkilä, Petri Törönen, Samuel Kaski, Jarkko Venna, Eero Castrén, Garry Wong:
Analysis and visualization of gene expression data using Self-Organizing Maps. Neural Networks 15(8-9): 953-966 (2002)
Coauthor Index
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