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ORCIDJournal of Open Source Software, Volume 9
Volume 9, Number 93, January 2024
- Ritam Raha
, Rajarshi Roy, Nathanaël Fijalkow, Daniel Neider:
Scarlet: Scalable Anytime Algorithms for Learning Fragments of Linear Temporal Logic. 5052 - Tuomas Eerola, Martin Clayton:
onsetsync: An R Package for Onset Synchrony Analysis. 5395 - Quentin Batista, Chase Coleman, Yuya Furusawa, Shu Hu, Smit Lunagariya, Spencer Lyon, Matthew McKay, Daisuke Oyama, Thomas J. Sargent, Zejin Shi, John Stachurski, Pablo Winant, Natasha Watkins, Ziyue Yang, Hengcheng Zhang:
QuantEcon.py: A community based Python library for quantitative economics. 5585 - Jessica Otis, James Safley, Megan Brett, Lincoln Mullen:
DataScribe: An Omeka S module for structured data transcription. 5661 - Maria Gargiulo, María J. Durán, Paula Andrea Amado, Patrick Ball:
verdata: An R package for analyzing data from the Truth Commission in Colombia. 5844 - Pablo Timoner, Fleur Hierink, Loïc Baecher, Caroline Fuhrer, Nicolas Ray:
inAccessMod: An R package to automate data downloading and processing for AccessMod. 5879 - Vivek Joshy:
OpenSkill: A faster asymmetric multi-team, multiplayer rating system. 5901 - Guilherme P. Castelão, Luiz Irber:
Gibbs Sea Water Oceanographic Toolbox of TEOS-10 implemented in Rust. 5988 - Andrew S. Rosen, Max C. Gallant, Janine George, Janosh Riebesell, Hrushikesh Sahasrabuddhe, Jimmy-Xuan Shen, Mingjian Wen, Matthew L. Evans, Guido Petretto, David Waroquiers, Gian-Marco Rignanese, Kristin A. Persson, Anubhav Jain, Alex M. Ganose:
Jobflow: Computational Workflows Made Simple. 5995 - Matthew Kuperus Heun, Zeke Marshall, Emmanuel Aramendia:
CLPFUDatabase: A suite of R packages for energy conversion chain analysis. 6057 - Niclas Rieger, Samuel J. Levang:
xeofs: Comprehensive EOF analysis in Python with xarray. 6060 - Matthias Mayr, Julian M. Salt Ducaju:
A C++ Implementation of a Cartesian Impedance Controller for Robotic Manipulators. 5194 - K. J. Schmidt, Aristana Scourtas, Logan T. Ward, Steve Wangen, Marcus Schwarting, Isaac Darling, Ethan Truelove, Aadit Ambadkar, Ribhav Bose, Zoa Katok, Jingrui Wei, Xiangguo Li, Ryan Jacobs, Lane Schultz, Doyeon Kim, Michael C. Ferris, Paul M. Voyles, Dane Morgan, Ian T. Foster, Ben Blaiszik:
Foundry-ML - Software and Services to Simplify Access to Machine Learning Datasets in Materials Science. 5467 - Lisa Buchauer, Shalev Itzkovitz:
cellanneal: A user-friendly deconvolution software for transcriptomics data. 5610 - Ian Hunt-Isaak, John Russell, Doeke Hekstra:
mpl-interactions: A Python Package for Interactive Matplotlib Figures. 5651 - Petr Grigorev, Lucas Frérot, Fraser Birks, Adrien Gola, Jacek Golebiowski, Jan Grießer, Johannes L. Hörmann, Andreas Klemenz, Gianpietro Moras, Wolfram G. Nöhring, Jonas A. Oldenstaedt, Punit Patel, Thomas Reichenbach, Thomas Rocke, Lakshmi Shenoy, Michael Walter, Simon Wengert, Lei Zhang, James R. Kermode, Lars Pastewka:
matscipy: materials science at the atomic scale with Python. 5668 - Thomas R. Else, Janek Gröhl, Lina Hacker, Sarah E. Bohndiek:
PATATO: a Python photoacoustic tomography analysis toolkit. 5686
Volume 9, Number 94, February 2024
- Peerasait Prachaseree, Saeed Mohammadzadeh, Berkin Dortdivanlioglu, Emma Lejeune:
FEniCS-arclength: A numerical continuation package in FEniCS for nonlinear problems in solid mechanics. 5727 - Marc Hirschvogel:
Ambit - A FEniCS-based cardiovascular multi-physics solver. 5744 - Pietro Sperotto, M. Ratz, Miguel A. Mendez:
SPICY: a Python toolbox for meshless assimilation from image velocimetry using radial basis functions. 5749 - Baptiste Delaporte, Thomas Arsouze, Gunnar Keppel, Swen Jullien, Christophe Menkes, Thomas Ibanez:
StormR: An R package to quantify and map the tropical storms and cyclones' winds characteristics. 5766 - David Malaspina, Jordi Faraudo:
Chitin Builder: a VMD tool for the generation of structures of chitin molecular crystals for atomistic simulations. 5771 - Coy J. Zimmermann, Keith B. Neeves, David W. M. Marr:
MicroTracker.jl: A Julia package for microbot research. 5804 - Alejandro José Uría-Álvarez, Juan José Palacios:
tightbinder: A Python package for semi-empirical tight-binding models of crystalline and disordered solids. 5810 - Johanna Casado, Gonzalo de la Vega, Beatriz García:
SonoUno development: a User-Centered Sonification software for data analysis. 5819 - Ziheng 'Leo' Li, Haowen 'John' Wei, Ziwen Xie, Yunxiang Peng, June Pyo Suh, Steven Feiner, Paul Sajda:
PhysioLabXR: A Python Platform for Real-Time, Multi-modal, Brain-Computer Interfaces and Extended Reality Experiments. 5854 - Nicodemo Di Pasquale, Ruslan L. Davidchack, Lorenzo Rovigatti:
CLEAVING: a LAMMPS package to compute surface free energies. 5886 - Julian Müller:
netroles: A Java library for role equivalence analysis in networks. 5903 - David Augustin:
Chi: A Python package for treatment response modelling. 5925 - Jimmy-Xuan Shen, Joel Varley:
pymatgen-analysis-defects: A Python package for analyzing point defects in crystalline materials. 5941 - Kleydson Stenio, Débora Marcondes Bastos Pereira Milori:
LIBSsa: an open source software for analyzing LIBS spectra. 5961 - Victor Alves, San Dinh, John R. Kitchin, Vitor Gazzaneo, Juan C. Carrasco, Fernando V. Lima:
Opyrability: A Python package for process operability analysis. 5966 - George Bouras, Susanna R. Grigson, Bhavya Nalagampalli Papudeshi, Vijini Mallawaarachchi, Michael J. Roach:
Dnaapler: A tool to reorient circular microbial genomes. 5968 - Clémence Réda, Jill-Jênn Vie, Olaf Wolkenhauer:
stanscofi and benchscofi: a new standard for drug repurposing by collaborative filtering. 5973 - Bonan Zhu, Seán R. Kavanagh, David O. Scanlon:
easyunfold: A Python package for unfolding electronic band structures. 5974 - Reid A. Johnson:
quantile-forest: A Python Package for Quantile Regression Forests. 5976 - Daniel Lerch-Hostalot, David Megías:
Aletheia: an open-source toolbox for steganalysis. 5982 - Brendan Collins, Ryan Beams, Miguel A. Lago:
Open-Source Pattern Creation Tool for Medical Extended Reality Image Quality Assessment. 6021 - Junta Tagusari:
H-RISK with NoiseModelling: a QGIS plugin to predict environmental noise and estimate health risks. 6023 - Jean-Baptiste Féret, Florian de Boissieu:
prospect: an R package to link leaf optical properties with their chemical and structural properties with the leaf model PROSPECT. 6027 - Lee S. Katz, John Phan, Henk C. den Bakker:
Fasten: a toolkit for streaming operations on fastq files. 6030 - Taha Zerrouki:
Tashaphyne: A Python package for Arabic Light Stemming. 6063 - Akihiro Kuno:
cstag and cstag-cli: tools for manipulating and visualizing cs tags. 6066 - Vikram Ramavarapu, Fabio Jose Ayres, Minhyuk Park, Vidya Kamath Pailodi, João Alfredo Cardoso Lamy, Tandy J. Warnow, George Chacko:
CM++ - A Meta-method for Well-Connected Community Detection. 6073 - Jake Langham, Mark J. Woodhouse:
The Kestrel software for simulations of morphodynamic Earth-surface flows. 6079 - Robrecht Cannoodt, Hendrik Cannoodt, Dries Schaumont, Kai Waldrant, Eric Van de Kerckhove, Andy Boschmans, Dries De Maeyer, Toni Verbeiren:
Viash: A meta-framework for building reusable workflow modules. 6089 - Yann Georg Büchau, Hasan Mashni, Matteo Bramati, Vasileios Savvakis, Ines Schäfer, Saskia Jung, Gabriela Miranda-Garcia, Daniel Hardt, Jens Bange:
PARMESAN: Meteorological Timeseries and Turbulence Analysis Backed by Symbolic Mathematics. 6127 - Florian Knoop, Nina Shulumba, Aloïs Castellano, J. P. Alvarinhas Batista, Roberta Farris, Matthieu J. Verstraete, Matthew Heine, David Broido, Dennis S. Kim, Johan Klarbring, Igor A. Abrikosov, Sergei I. Simak, Olle Hellman:
TDEP: Temperature Dependent Effective Potentials. 6150 - Mark W. Isken, Jacob W. Norman:
hillmaker: A Python package for occupancy analysis in discrete entity flow systems. 6154 - David Frank, Jonas Jelten, Tobias Lasser:
elsa: an elegant framework for tomographic reconstruction. 6174 - Max Weiner, Christoph Renzing, Max Stirl, Matthias Schmidtchen, Ulrich Prahl:
PyRolL - An Extensible OpenSource Framework for Rolling Simulation. 6200 - Joel H. Nitta, Wataru Iwasaki:
dwctaxon, an R package for editing and validating taxonomic data in Darwin Core format. 6215 - Mohamed Masoud, David A. Gutman, Sergey M. Plis:
HistoJS: Web-Based Analytical Tool for Advancing Multiplexed Images. 6317 - He Zhang:
cppTPSA/pyTPSA: a C++/Python package for truncated power series algebra. 4818 - Patrick N. Raanes, Yumeng Chen, Colin Grudzien:
DAPPER: Data Assimilation with Python: a Package for Experimental Research. 5150
Volume 9, Number 95, March 2024
- Enrico Ubaldi, Takahiro Yabe, Nicholas K. W. Jones, Maham Faisal Khan, Alessandra Feliciotti, Riccardo Di Clemente, Satish V. Ukkusuri, Emanuele Strano:
Mobilkit: A Python Toolkit for Urban Resilience and Disaster Risk Management Analytics. 5201 - Nicolas Richart, Guillaume Anciaux, Emil R. Gallyamov, Lucas Frérot, David S. Kammer, Mohit Pundir, Marco Vocialta, Aurelia Isabel Cuba Ramos, Mauro Corrado, Philip Müller, Fabian Barras, Shenghan Zhang, Roxane Ferry, Shad Durussel, Jean-François Molinari:
Akantu: an HPC finite-element library for contact and dynamic fracture simulations. 5253
Volume 9, Number 96, April 2024
- Reed Nelson, Rosa Aghdam, Claudia R. Solís-Lemus:
MiNAA: Microbiome Network Alignment Algorithm. 5448 - Arianna I. Renzini, Alba Romero-Rodriguez, Colm Talbot, Max Lalleman, Shivaraj Kandhasamy, Kevin Turbang, Sylvia Biscoveanu, Katarina Martinovic, Patrick M. Meyers, Leo Tsukada, Kamiel Janssens, Derek Davis, Andrew Matas, Philip Charlton, Guo-chin Liu, Irina Dvorkin:
pygwb: a Python-based library for gravitational-wave background searches. 5454 - Naeem Khoshnevis, Boyu Ren, Danielle Braun:
GPCERF - An R package for implementing Gaussian processes for estimating causal exposure response curves. 5465 - David J. McKenna, Evan F. Keane, Peter T. Gallagher, Joe McCauley:
udpPacketManager: An International LOFAR Station Data (Pre-)Processor. 5517 - Fabian Plum:
OmniTrax: A deep learning-driven multi-animal tracking and pose-estimation add-on for Blender. 5549 - Mats W. J. van Es, Eelke Spaak, Jan-Mathijs Schoffelen, Robert Oostenveld:
Reducing the efforts to create reproducible analysis code with FieldTrip. 5566 - Alexander T. Bradley, Robert J. Arthern, David T. Bett, C. Rosie Williams, James Byrne:
WAVI.jl: Ice Sheet Modelling in Julia. 5584 - Benjamin Lansdell, Abbas Shirinifard:
Ethome: tools for machine learning of animal behavior. 5623 - Gurjeet Sangra Singh, Luigi Acerbi:
PyBADS: Fast and robust black-box optimization in Python. 5694 - Carsten Lemmen, Sascha Hokamp, Serra Örey, Jürgen Scheffran:
Viable North Sea (ViNoS): A NetLogo Agent-based Model of German Small-scale Fisheries. 5731 - Luc van Vught, Corné Haasjes, Jan-Willem M. Beenakker:
ZOSPy: optical ray tracing in Python through OpticStudio. 5756 - Pierluigi Crescenzi, Emanuele Natale, Aurora Rossi, Paulo Bruno S. Serafim:
WorldDynamics.jl: A Julia Package for Developing and Simulating Integrated Assessment Models. 5772 - Sarah Narvaiz, Qinyun Lin, Joshua M. Rosenberg, Kenneth A. Frank, Spiro J. Maroulis, Wei Wang, Ran Xu:
konfound: An R Sensitivity Analysis Package to Quantify the Robustness of Causal Inferences. 5779 - Sadegh Mohammadi:
Pyheartlib: A Python package for processing electrocardiogram signals. 5792 - Jeremy Theler:
FeenoX: a cloud-first finite-element(ish) computational engineering tool. 5846 - Bhavin S. Patel, Peter Hill, Liam Pattinson, Maurizio Giacomin, Arkaprava Bokshi, Daniel Kennedy, Harry G. Dudding, Jason. F. Parisi, Tom F. Neiser, Ajay C. Jayalekshmi, David Dickinson, Juan Ruiz Ruiz:
Pyrokinetics - A Python library to standardise gyrokinetic analysis. 5866 - Patrick Quéméré:
Fitspy: A Python package for spectral decomposition. 5868 - Evert Nasedkin, Paul Mollière, Doriann Blain:
Atmospheric Retrievals with petitRADTRANS. 5875 - Shaowu Pan, Eurika Kaiser, Brian M. de Silva, J. Nathan Kutz, Steven L. Brunton:
PyKoopman: A Python Package for Data-Driven Approximation of the Koopman Operator. 5881 - Indrajeet Haldar:
The plebeian Graph Library: A WebGL based network visualisation and diagnostics package. 5887 - Thomas Vergauwen, Michiel Vieijra, Andrei Covaci, Amber Jacobs, Sara Top, Wout Dewettinck, Kobe Vandelanotte, Ian Hellebosch, Steven Caluwaerts:
MetObs - a Python toolkit for using non-traditional meteorological observations. 5916 - Keneth Garcia-Cifuentes, Rosa L. Becerra, Fabio De Colle:
ClassiPyGRB: Machine Learning-Based Classification and Visualization of Gamma Ray Bursts using t-SNE. 5923 - Akkarapakam Suneesh Jacob, Rituparna Datta:
Automatic Computation for Robot Design (ACRoD): A Python package for numerical calculation of Jacobian of a robot at a given configuration around a specified end-effector point. 5927 - Benjamin A. Steer, Naomi A. Arnold, Cheick Tidiane Ba, Renaud Lambiotte, Haaroon Yousaf, Lucas Jeub, Fabian Murariu, Shivam Kapoor, Pedro Rico, Rachel Chan, Louis Chan, James Alford, Richard G. Clegg, Félix Cuadrado, Matthew Russell Barnes, Peijie Zhong, John Pougué-Biyong, Alhamza Alnaimi:
Raphtory: The temporal graph engine for Rust and Python. 5940 - Stefan Henneking, Socratis Petrides, Federico Fuentes, Jacob C. Badger, Leszek F. Demkowicz:
$hp\mathrm{3D}$: A Scalable MPI/OpenMP $hp$-Adaptive Finite Element Software Library for Complex Multiphysics Applications. 5946 - Josu C. Aurrekoetxea, Jamie Bamber, Sam E. Brady, Katy Clough, Thomas Helfer, James Marsden, Miren Radia, Dina Traykova, Zipeng Wang:
GRDzhadzha: A code for evolving relativistic matter on analytic metric backgrounds. 5956 - Clàudia Rodés-Bachs, Jon Sampedro, Russell Horowitz, Dirk-Jan Van de Ven, Ryna Yiyun Cui, Alicia Zhao, Matthew Zwerling, Zarrar Khan:
gcamreport: An R tool to process and standardize GCAM outputs. 5975 - Giulia Crocioni, Dani L. Bodor, Coos Baakman, Farzaneh M. Parizi, Daniel-T. Rademaker, Gayatri Ramakrishnan, Sven van der Burg, Dario F. Marzella, João M. C. Teixeira, Li C. Xue:
DeepRank2: Mining 3D Protein Structures with Geometric Deep Learning. 5983 - Anselm Hudde:
greeks: Sensitivities of Prices of Financial Options and Implied Volatilities. 5987 - Adam K. Townsend:
Stokesian Dynamics in Python. 6011 - Brenda Praggastis, Sinan Aksoy, Dustin Arendt, Mark Bonicillo, Cliff A. Joslyn, Emilie Purvine, Madelyn Shapiro, Ji Young Yun:
HyperNetX: A Python package for modeling complex network data as hypergraphs. 6016 - Chad A. Greene, Svetlana Erofeeva, Laurie Padman, Susan L. Howard, Tyler Clark Sutterley, Gary D. Egbert:
Tide Model Driver for MATLAB. 6018 - Frederik L. Johansen, Andy S. Anker, Ulrik Friis-Jensen, Erik B. Dam, Kirsten M. Ø. Jensen, Raghavendra Selvan:
A GPU-Accelerated Open-Source Python Package for Calculating Powder Diffraction, Small-Angle-, and Total Scattering with the Debye Scattering Equation. 6024 - Mengqi Zhao, Zarrar Khan, Kalyn Dorheim, Chris R. Vernon:
helios: An R package to process heating and cooling degrees for GCAM. 6033 - Nathan Musoke:
UltraDark.jl: A Julia package for simulation of cosmological scalar fields. 6035 - Matthew Peres Tino, Abbas Yusuf Abdulaziz, Robert Suderman, Thomas Akdeniz, Nasser Mohieddin Abukhdeir:
Shapelets: A Python package implementing shapelet functions and their applications. 6058 - Kevin D. Murray, Justin O. Borevitz, Detlef Weigel, Norman Warthmann:
Acanthophis: a comprehensive plant hologenomics pipeline. 6062 - Chris Byrohl, Dylan Nelson:
scida: scalable analysis for scientific big data. 6064 - Andres R. Tejedor, Ignacio Sanchez-Burgos, Eduardo Sanz, Carlos Vega, Felipe J. Blas, Ruslan L. Davidchack, Nicodemo Di Pasquale, Jorge Ramirez, Jorge R. Espinosa:
Mold: a LAMMPS package to compute interfacial free energies and nucleation rates. 6083 - Gerrit Ansmann:
A Python module to combine $p$ values arising from discrete tests. 6096 - Fred Shone, Theodore Chatziioannou, Bryn Pickering, Kasia Kozlowska, Michael Fitzmaurice:
PAM: Population Activity Modeller. 6097 - Robert van Leeuwen, Connor Ferster:
sectionproperties: A Python package for the analysis of arbitrary cross-sections using the finite element method. 6105 - Andrea Spinelli, Timoleon Kipouros:
PDOPT: A Python library for Probabilistic Design space exploration and OPTimisation. 6110 - J. McIntosh, Qian Cao, Berkman Sahiner, Nicholas Petrick, Mohammad Mehdi Farhangi:
DICaugment: A Python Package for 3D Medical Imaging Augmentation. 6120 - Maik Budzinski, João F. D. Rodrigues, Mathieu Delpierre:
bonsai_ipcc - a Python package for the calculation of national greenhouse gas inventories. 6123 - Nguyen Van Thieu:
PerMetrics: A Framework of Performance Metrics for Machine Learning Models. 6143 - J. Michael Johnson, Shahab Afshari, Arash Modaresi Rad:
AHGestimation: An R package for computing robust, mass preserving hydraulic geometries and rating curves. 6145 - Daiane I. Dolci, James R. Maddison, David A. Ham, Guillaume Pallez, Julien Herrmann:
checkpoint_schedules: schedules for incremental checkpointing of adjoint simulations. 6148 - James Duncan, Tiffany M. Tang, Corrine F. Elliott, Philippe Boileau, Bin Yu:
simChef: High-quality data science simulations in R. 6156 - Yangkang Chen, Zhongru Gu, Xiangjiang Zhan:
stemflow: A Python Package for Adaptive Spatio-Temporal Exploratory Model. 6158 - Tyler K. Chafin, Steven M. Mussmann, Marlis R. Douglas, Michael E. Douglas:
autoStreamTree: Genomic variant data fitted to geospatial networks. 6160 - Philipp Holl, Nils Thuerey:
Φ-ML: Intuitive Scientific Computing with Dimension Types for Jax, PyTorch, TensorFlow & NumPy. 6171 - Hendrik Mann:
dropout: an R Package for Addressing Dropouts, Missing Values, and Sectional Challenges in Survey Data Analysis. 6181 - Caleb Weinreb, Mohammed Abdal Monium Osman, Maya Jay, Sandeep R. Datta:
Systems Neuro Browser (SNUB). 6187 - Simon Dirmeier:
Surjectors: surjection layers for density estimation with normalizing flows. 6188 - Oskar Laverny, Santiago Jiménez:
Copulas.jl: A fully Distributions.jl-compliant copula package. 6189 - Frank Male:
Pywaterflood: Well connectivity analysis through capacitance-resistance modeling. 6191 - S. Mason Garrison, Michael D. Hunter, Xuanyu Lyu, Jonathan D. Trattner, S. Alexandra Burt:
BGmisc: An R Package for Extended Behavior Genetics Analysis. 6203 - Nicolas Frerebeau:
aion: An R Package to Represent Archaeological Time Series. 6210 - Federico Del Pup, Andrea Zanola, Louis Fabrice Tshimanga, Paolo Emilio Mazzon, Manfredo Atzori:
SelfEEG: A Python library for Self-Supervised Learning in Electroencephalography. 6224 - Dmitry Ustalov, Nikita Pavlichenko, Boris Tseitlin:
Learning from Crowds with Crowd-Kit. 6227 - Michael J. Roach, Bradley J. Hart, Sarah J. Beecroft, Bhavya Nalagampalli Papudeshi, Laura K. Inglis, Susanna R. Grigson, Vijini Mallawaarachchi, George Bouras, Robert A. Edwards:
Koverage: Read-coverage analysis for massive (meta)genomics datasets. 6235 - Meng Cai, Yingjie Li, Dirk Colbry, Veronica F. Frans, Yuqian Zhang:
seesus: a social, environmental, and economic sustainability classifier for Python. 6244 - Eric Lindgren, Magnus Rahm, Erik Fransson, Fredrik Eriksson, Nicklas Österbacka, Zheyong Fan, Paul Erhart:
calorine: A Python package for constructing and sampling neuroevolution potential models. 6264 - Harsh Sinha, Pradeep Reddy Raamana:
MRdataset : A unified and user-friendly interface to medical imaging datasets. 6269 - Alexander Jüstel, Frank Strozyk:
PyHeatDemand - Processing Tool for Heat Demand Data. 6275 - Robert Moss:
pypfilt: a particle filter for Python. 6276 - Aakash Ashok Naik, Katharina Ueltzen, Christina Ertural, Adam J. Jackson, Janine George:
LobsterPy: A package to automatically analyze LOBSTER runs. 6286 - Étienne Lac, Guy Spiegeleer, Adrien Delsalle, Frédéric Collonval, Duc-Trung Lê, Mathias Malandain:
CoSApp: a Python library to create, simulate and design complex systems. 6292 - Moritz L. Obenauer, Kai N. Spauszus, Pol Besenius, Friederike Schmid:
Project RACCOON: Automated construction of PDB files for polymers and polymer peptide conjugates. 6293 - Xinye Chen, Stefan Güttel:
fABBA: A Python library for the fast symbolic approximation of time series. 6294 - Ryan Kingsbury:
pyEQL: A Python interface for water chemistry. 6295 - Thomas Berlok, Léna Jlassi, Ewald Puchwein, Troels Haugbølle:
Paicos: A Python package for analysis of (cosmological) simulations performed with Arepo. 6296 - Shuang Song, Shuai Wang, Chentai Jiao, Elías José Mantilla Ibarra:
ABSESpy: An agent-based modeling framework for social-ecological systems. 6298 - Martin Kuric, Regina Ebert:
plotastic: Bridging Plotting and Statistics in Python. 6304 - Saipraneeth Devunuri, Lewis Lehe:
GTFS Segments: A Fast and Efficient Library to Generate Bus Stop Spacings. 6306 - Yu Wang, Emma R. Cobian, Jubilee Lee, Fang Liu, Jonathan D. Hauenstein, Daniele E. Schiavazzi:
LINFA: a Python library for variational inference with normalizing flow and annealing. 6309 - Essam Wisam, Anthony D. Blaom:
Imbalance: A comprehensive multi-interface Julia toolbox to address class imbalance. 6310 - Carson Farmer, Héctor Medina:
Hyperelastics.jl: A Julia package for hyperelastic material modelling with a large collection of models. 6314 - Shael Brown, Reza Farivar-Mohseni:
TDApplied: An R package for machine learning and inference with persistence diagrams. 6321 - Rohini S. Gupta, Chris R. Vernon, Travis Thurber, David F. Gold, Zachary M. Hirsch, Antonia Hadjimichael, Patrick M. Reed:
statemodify: a Python framework to facilitate accessible exploratory modeling for discovering drought vulnerabilities. 6325 - Matteo Ravasi, Marcus Valtonen Örnhag, Nick Luiken, Olivier Leblanc, Eneko Uruñuela:
PyProximal - scalable convex optimization in Python. 6326 - Aleksander Sulkowski, Clément Bouton, Chad M. Swanson:
Syn-CpG-Spacer: A Panel web app for synonymous recoding of viral genomes with CpG dinucleotides. 6332 - Damyn Chipman:
EllipticForest: A Direct Solver Library for Elliptic Partial Differential Equations on Adaptive Meshes. 6339 - Bartholomew Andrews:
HofstadterTools: A Python package for analyzing the Hofstadter model. 6356 - Andrew Gard, Alexia Myers, Irene Luwabelwa:
The fqar package: R tools for analyzing floristic quality assessment data. 6366 - Alexander D. Fuchs, Johannes A. F. Lehmeyer, Heinz Junkes, Heiko B. Weber, Michael Krieger:
NOMAD CAMELS: Configurable Application for Measurements, Experiments and Laboratory Systems. 6371 - Gabriele Ottino, Daniele Panico, Daniele Tomatis, Pierre-Alexandre Pantel:
lbh15: a Python package for standard use and implementation of physical data of heavy liquid metals used in nuclear reactors. 6383 - Xin Zhao, Maksym Chepeliev, Pralit Patel, Marshall Wise, Katherine V. Calvin, Kanishka Narayan, Chris R. Vernon:
gcamfaostat: An R package to prepare, process, and synthesize FAOSTAT data for global agroeconomic and multisector dynamic modeling. 6388 - Karelle Rheault, Jesper R. Christiansen, Klaus Steenberg Larsen:
goFlux: A user-friendly way to calculate GHG fluxes yourself, regardless of user experience. 6393 - Joanna Piper Morgan, Ilham Variansyah, Samuel L. Pasmann, Kayla B. Clements, Braxton Cuneo, Alexander Mote, Charles Goodman, Caleb Shaw, Jordan Northrop, Rohan Pankaj, Ethan Lame, Benjamin Whewell, Ryan G. McClarren, Todd S. Palmer, Lizhong Chen, Dmitriy Y. Anistratov, C. T. Kelley, Camille J. Palmer, Kyle E. Niemeyer:
Monte Carlo / Dynamic Code (MC/DC): An accelerated Python package for fully transient neutron transport and rapid methods development. 6415 - Seán R. Kavanagh, Alexander G. Squires, Adair Nicolson, Irea Mosquera-Lois, Alex M. Ganose, Bonan Zhu, Katarina Brlec, Aron Walsh, David O. Scanlon:
doped: Python toolkit for robust and repeatable charged defect supercell calculations. 6433 - Guillaume Dalle:
HiddenMarkovModels.jl: generic, fast and reliable state space modeling. 6436 - Pierre J. Walker, Andrés Riedemann, Zhen-Gang Wang:
GCIdentifier.jl: A Julia package for identifying molecular fragments from SMILES. 6453 - Maria Florencia D'Andrea, Pilar Fernández:
quadkeyr: Tools for converting QuadKey-identified datasets (Microsoft's Bing Maps Tile System) into raster images and analyzing Meta (Facebook) Mobility Data. 6500 - Metin San:
ZodiPy: A Python package for zodiacal light simulations. 6648
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